>input_sequence_80373
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-----------------------------------------------------------ATGGCGGACCTCGTCCCGCTG
AATAATAATCCGTACAACGGCGGCGGCGATGACGAGGCGGTCGCGGTGGAGCCCGAGGAGCGGAGCAGGCTTATGCTCAT
CTGCGCGGTGGGTCTCTACTACGTCGCCATCCGCGGCTTCTCCCAGCTGTTGCTCGCCGGCGGTTTCCGCCGGCATGTCA
TCACGTCTGGTGACCTCACGCTGTGGGCCGCGCTGCTGGACCTCGCCGGCAGCCTGGTGTACCTCGCCGCGAGCCTGCTA
GCGCTTGTGTCTCTCGTCCCCGCGCTCTGGCTCGTCCTTGTCTGGGCGGCTCTCGTGGCGGAGTGGCTCCACGGCAACCC
GGAGGGGCGCAGGCTGGCGGATGACCTGCTCCAGTCCGACCGCTGGCTGTTCCACGAGCCCTTCTATCGAGTCCTGTGCC
GTCTTTTCCCATACTAG---------------------------------------------------------------
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>chr7D_1_TraesCS7D01G012300
TGACGAAGAAGGGGGAGGCATATGTCAAGCGTTCGTATATCCAGGAGGAGAAAAAGGCTGAGCAGTTCAACCTGTTGAT-
GGAGACGAGCGAGAAGAAGCTGGCGCTCGAAGAGAAGAGGGCCTTGATCGAAGAGAAGAAG-CCATGCTCCAGGAGAAGA
AGGCCATGCTCGAA-AAAAGAAGGTGAAGATCACAGCCGATGTGAAGGATGCCAAGATGTTGTCCTTAAAGTTAGAGTCT
TTGGATGTCGATGCAAGAATGATCGTGCAAGCCGTCCGCAAGAAGATGTTGCAGCGGCAACATAAGGAGTTGGAGGCGGC
CGACAAGGAGGAGGAGAAGGTGGCGGTA------GAGATGAAGGC------TGCATACGCGGCGGCGACGACACGTCGAG
TGTGGAGGAGGGTCGGATTGCCAGTCCGGTAGGGCAAAAAAAT--GC-AATTTTTTCACGGACTGCGGAACGGATATTCT
TTTGTCATCGGGCATGTG-AAAACTTAAGCATATTTGCCTCATTTTGGATGTGATCAGGCATGTAATCCGACGCACTGCC
CTTTACTGGCAAACATATACAGGATAGTATCGGATGGTGGACTCCGACATCCATGTCCGTGGACAGGTCCCATGTCCGCG
GACAGGAGCAAATTTATGGGCTAGCATTGGAGATGCTCTTGCTTCCTATAGAGCGAGAGCCTTTTTTATCATATAAGTAA
TTAATTTCTGGACGTCGGCCATGGATACCTTCGTCTCTCGCAGCTCTACGACGTGCTTTTCTTTGAGTCGTGTATAGAGT
ACGTACGTGTTACATTATGTCTCTTTTCGTGTTTGAGACCGATCCGAACACCGCACGTATACTTACGTAATATAACCACA
TGTACGAACGAGTTCCCACCAGAATTCTAGTCATCAAACAAACACGTCCGGCACACCAGGCGATCGAGGGCTAGACAGAG
ATCGATAGGTGGAAGCAGCAGCCACAGACCACAGTATCCGGCCGCCCAATCCTCAACCGATGGCGGACCTCGTCCCGCTG
AATAATAATCCGTACAACGGCGGCGGCGATGACGAGGCGGTCGCGGTGGAGCCCGAGGAGCGGAGCAGGCTTATGCTCAT
CTGCGCGGTGGGTCTCTACTACGTCGCCATCCGCGGCTTCTCCCAGCTGTTGCTCGCCGGCGGTTTCCGCCGGCATGTCA
TCACGTCTGGTGACCTCACGCTGTGGGCCGCGCTGCTGGACCTCGCCGGCAGCCTGGTGTACCTCGCCGCGAGCCTGCTA
GCGCTTGTGTCTCTCGTCCCCGCGCTCTGGCTCGTCCTTGTCTGGGCGGCTCTCGTGGCGGAGTGGCTCCACGGCAACCC
GGAGGGGCGCAGGCTGGCGGATGACCTGCTCCAGTCCGACCGCTGGCTGTTCCACGAGCCCTTCTATCGAGTCCTGTGCC
GTCTTTTCCCATACTAGCTTAGTACTGTCAAAGCTGTTGTCATCTTTCTCTCAAAAAGAAAAAAAAAATAGTTGTTGTCA
TCTTCATTCGTCCATATTATTTGTCTTAGATTCGTCTAGATTTACACTTGTGTATGCAATGAAAATTTAAACTTGTATTG
ACATTTGGCTGTTTGCAGATTTGATATTATTTATCATTTTCTTCTCTTCGTTTCTTCTTTGTTGTTCTGGACAAAAGAAG
TTTGATCATCGACAGCCGGGCGTCTTAACCCCTCCTTGTATGCCTGGGCAGACGGCTCTGTCACTGACCTGTCGAGAAAA
TCCGAACTAGACGGATAACCCATACCGGACCAAAATGCCCGGGTGACCGGCACCCCTCATATCCAGCTGGGCGGATATGG
GGAGGCATGTGCGCGTCCGTCACGTAAGATCCGGCTCACGTTAACCCACTTGACCCCACATATATTCGTCCACATCCGCT
CCATGGACCAAACCATAGCCACTCCACTCTGCCACTAAGCATCGTTCCGGCGATCATCAACCTTCTCCGGCATGGCGGGA
AGTAGATCCAAGTCCACCGTTACCCGATATGTGGCCTGGGACCTCATCCCGGTCGGGTCCGAGGTGGAGATGGCCATCCG
CATTGCGCTCCGCCGCGCCCGCTGGGAGAATGACCCACAACGGTCGGACTCGATCTAGCAGGATCCATAGCGTCCGCCCA
AATCCAGCGGGATCCGGCGCGACGCGCGTCGCCGCTGCCTTGCCGGAGGTGGTGCGCTCCGTCTGGCATCCGAAAGACGT
GGCGGAGGCACAACCCCTTCGTTGGTGTGCCGACCTGGAGGCCTTTCCTGGCATGTCTGGTGGTGAGGCTATGGCGTGCC
ATGCCCACCGTGCGAGACAAAGGGTGCGGGAGGCCGCGGCAGACGTCGGTGAGGCAGAGTCACACTATCCTGCATCGATA
CGGATGGTCGGCAACCCCGGGCACCGCAACCGCGTCGTGGTGAACGTGCCGGCCTGC
>chr1A_4
---CGAAAAAGGAGGAGGCATACGTCAAGTGGTCCAACATCAAGTGGGGGGAAAAGGGGGAGAGGCTCAAACTGTTGAT-
GAAGGCGACCGAGAAGAAGCTGGCGCTCGAAGAGAAGATGGCCTTAATGGAAGAGAAGAAAGTTATGCTCGATGAGACGA
AGGCCATGCTCAATGAAAAGAAGGTGAAGATCGTAGCCGGTGCGGAGGACACCAAGTTGTTGTCCTTGAAGGTGGAGTCT
TTCGATGCCGACGCAAGAATGATCGTGTAAGTCGTCCGCTCCAAGATGTTGCAGCGGCAACAAGAGGAGTTGGAGGTTGC
GGACAAGGAGAAGGTGGA---GGCGGCA------GAGATGGAGGC------TGCATACGCGGCATCGACGACATCTTGTG
CGTGGAGGAGGGTCGAATTGCCGGTCTGGGAGGCAAAAAATCT--CAAAAAATTTACACGAACTGTCGGGCGGATATTCT
TTTGTCATCGGGCATGTA-AAAATTTAAGCATACTTGCCTCTTTTTGAATGTGATC------------------------
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>chr3D_4
---CGAAGAAGGAGGAGGCATATGTCAAGTGGTCCGACATCAAGAAGG-AAAAAAGGCGGAGAGGTTCAAACTATTGATG
G-AGGAGACCAAGAAGAAGCTGGCGCTCAAAGAGAAGAGGGCCTTGATCGAAGAGAAGAAGGCCATGCTCGAGGAGAAGA
AGGCATTGCTCGAAGAGAAGAAGGTGCAGATTGCAGCCAATGCAGAGGATGCTAAGATGTTGACCTTGAGTTTGGATGCT
TTGGATGCTAATGCAAGAATAATCGTGCAAGCCGTCCGCTACAAGATATTCTAGTGGAAAAAAGATGACTTGGAGGCGGA
AGACAAGGAGGAGATGGAGGCGGTAGAGGAGCAGGAAGCGGAGGC------TTCCTACATAGCGGTGATGACAACTCGGG
TGTGGAA---GCTCAAACTGTCGGTCCGGCAGGGCACAAAAACTAAT--TTTCTGCA---------CGGACTGATATTGT
TTTGTGATCAGGCATGTA-AAAACCACATCATACTTGCCTCTTTTTGGGTGTAATCGGGCTTGTGATCCGACGC------
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>chr3D_5
----GAAGAAGGAGGAGGCATACGTCAAGCGGTCTGACATCGAGGAGGAAAAAAAGGCGAAGAGGTTGAAACTGTTGAT-
G-AGGCGACCAAGGAGAAGCTAGCGCTCAAAGAGAAGAGGGCCTTGATCGAAGAGAAGAAGGCCATGCTCAAGGAGAAGA
AAGCGTTGCTCGAAGAGAAGAAGGTGCAGATAGCCGCCGATGTGGAGGACGCCAATATGTTGACATTGAATTTGGATGCT
TTGGATGCCGACACAAGAATAATCGTGTAAGCCATCCGCTACAAGATGTTGGAGCGGCAGAAAGATGACTTGAAGGTGGC
AGACAAGGAGGAGATGAATGCGGCAGAGGAGGAGGAAGCTGAGGC------TGCCTACACGGCCGCGGCGACATCTTGAG
CATGGAA---GCCCGAACTGCCGGTCCGGCAAGGCAGAAATGT--AA--TTGTCGGCATGGACTGCCAGACTGAAATTCT
TTTGTGATCGGGCATGTA-AAAACTACAGCATACATGTCTCTTTTTGGGTGTGATCGGGCATGTGATCCGGCGC------
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>chr7D_6
-----AAGAAGGAGGAGGCATACGTCAAGCGCCCAGACTTTAAGGAGGAAAAAAAGGCGAAGAGGCTCAAACTGTTGAT-
GGAGACGACCGAGAAGAAGCTAGAACTCAAAGAGAAGAGGGCCGTGATCGAAGAGAAGAAAGCCATGCTCGAGGAGAAGA
AGATGATGTTCGAAGAAAAGAAGGTGAAGATCATAGCCGATGCGGAGGACGCCAAGATGTTGTCCTTGAAGGTGGAGTCT
TTGGATGCCGATGCAAGAATGATCGTGCAAGCCGTCCGGTATAAGATGTTGTAGTGGCAGAAAAATGAGTTGGAGGCGAC
AGACAAGGAGGAGGAGGAGGAGGCGGCGGTGAAGGAGGCGGAGGC------TGCATATGCGGCGTCGATGACAACTTGAG
TGTGGAGGAGGCTCGGGTTGCCGGTCCGGCGGGGTAGAAAATCTCAA--TTTTTTGCACGGACTGTCGGGATGATATT-T
TTTGTGGTCGGGCATGTA-AAAACTTAAGCATAGTTGCCTCTTTTTGGTTGTGATCAGACATGTGATCCG----------
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>chr7B_6
-----AAGGAGGAGGAGGCATACGTCAAGCGCCTAGACATCAAGGAGGAAAAAAAGTTAGAGAGGTTCAAACTGTTGAT-
GGAGACGACCGAGAAGAAGCTAGCGCTCGAAGAGAAGAGGGTTGAGATCGAAGAGAAGAAAGCCATGCTCGAGGAGAAGC
AGACAATGTTCGAAGAAAAGAAGGTGAAGATTGTAGCCGATGCAGAGGACGCCAAGATGTTGTCCTTGAAGGTTGAGTCT
TTGGATGCCAATGCAAGAATGATCGTGCAAGCCGTCCGATACAAGATGTTGCAGCGGTAGAAAGATGAGTTGGAGGCAAC
GGACAAGGAGGAGGAGGAGGCAA---CGGTGAAGGAGGCGGAGGC------TGCATACGCGGCGTCGATGACAACTTGAG
TGTGGAGGAGGCTCGGGTTGCCGATCCGGCAGGGTAGAAAATCTCAA--TTTTTTGCACGGACTGTCGGACTAATATTCT
TTTGTGATCGGGCATGTA-AAAACTTGGGCATAGTTGCCTCTTTTTGATTGTGATCAGATATGTGATCCG----------
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>chr1B_9
--------AAGGGGGAGGCATATGTCAAGCGCTCGGCCATCAAGGAGGAAAAA-AGGCGGAGAGGTTCA-----------
-AAGGCAACCGAGAAGAAGCTAGTGCTCGAAAAGAAGAGGGCCTTGATCGAAGAGAAGAAGGCAATGCTTGAGGATAAGA
AGGTGATGCTCGAAGAAAAGAAGGTGAAGATCGCAACCGATGCAGAGGACGCAAAGATACTGTCCTTGAAGGTGGAGTCT
TTGGATGCCGACGCAAGAAAGATTGTGCAAGTCATCCTCTATAAGATGTTGCAGTGGCAGAAAGATAATTTGGAGGCGGC
AGACAAGGAGGAGGAGGAGGAGG---------------AGGAGGCATAGGTTGCATACAGGGCGACAACGACACCTTTAG
CGTGGAGGAGGCTCGGATTGCCTGTCTGGCAA---AAAATATC--TC-GTTCTTTGCACGGACTGTGGGATTTATATTCT
TTTATGATTGCGCATGTA-AAAACTTAAGCATACTTGCCTCTTTTTAGTTGTGATCACGCATGTGATCGAGCGC------
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>chr6B_14
-------------GGAGGCATACGTCAAGCGCTCGAACATCAAGGAGGGGAAAAAGGCAGAGAGGTTCAAGCTATTGAT-
GGGGGCGATCGAGAAGAAGCTAGTTCTTG-AAAGAAGAGGGTCGTGATCGAACATAATAAGGTCATGCTCGAGGACAAGA
AGAGGATGCTCGAAGAAAAGAAGGTGAAGATCACAGCCGATGTGGAGGACAGCAAGATGTTTTCATTGAATATGGGGTCT
TTGGATGTCGACACAAGGATGATCATGCAAGCCGTCCGCTACAAGATATTGCAGCGGAAGAAAGATGAGTTGGAGGCGGC
AGACAAGAAGGAGGAGAAGGAGG---------------TGGAGGC------TTCATATGTGGCGGCGATGGCACCTTGAG
CGT---GGAGGCTCGGATTGTTGGTCCGACAGGGTAGAAAACT--CC-ATTTA-TACATGGAGTGTCGTACTGATATTAT
TTTCTTATTGGGCAAGTACAAAACTTAATCATACTTGTCTCTTGTTGGTTGTGATCGGGCATGT----------------
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>SNPs
SSS----------------------------S---S-S---S----------------S---SS------S---------
--------S-------------------------------------------------------------S---------
--------------------------------------------S----------------------S-----S------
---------------------------------------S-S--------------------S-----------------
S-------------------S-----S-------------S---------------------------------S-----
----------------------S------S---------------S---------S------------S-----------
-----------------S---------------S-------S----------------------S---------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_772
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--------------------------------GTCTCTCGCAGCTCTACGAC----------------------------
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>reverse_2105
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------------------------GGAGAATGACCCACAACGGT------------------------------------
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