>input_sequence_80351
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-----------------------------------------ATGAAAAACCTACAGCGCAAGGTACAACCAGTGAAGGGG
AAGATGGAGCCGAAGCCCAAGAGGAAGAAGACCAGGGCGGCGGCGCCAGCAGAGGTGGAGGAATTCACGGCGCTTGAGCT
GGAAGCGGCTGAGCAACTCATCCGCCTTAGCGAGAGCAGCGTGTCCTTGGGCACCCTGCGCGTCCTCCCCGTCGCCCCCT
GCGTGGCGCTCTCGGGTCAGTCCTCCTCCCCTCCGCGCTCCACGAAGGCCCCACCAGCGCCGCCGGCTTCGGGCGCCATA
ATTCTTGGTGGTTCCGAGGACTGGGAGGAAGATGAGGAGCATGAGGTGGCCGGGAGGCAGCGGAGGGTGAAGCGCTACCG
CCTGATCAGCGAGATCTACGCCGCAACGGAGCCAATTGGCGAGCGCACCGGTAGCAAACAA---AACAAGAAAAGGG---
AGTAG---------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G333300
CAAAAGAGCAAGGGGAAATAGAGAAATATGCAATTGTGACAACAAGT-TCTATAGTATGAATATGCAACGGTAACAAGGA
CTGTCTATATAATGTAATTTAAACTATGTGTATACCTAGCCATGTGAATGCGCAACGGTAACAACGAGTGTGAAACCAGG
CATCAAATAACTTACATACCATAAATCATGATAGGAAACAACTATGGTAGGGAAATCTATAGCATGTACATACAATGTGT
GAGAACCTCAAGCGTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACACAGTGACGCGTATT
CGCATTGTAATACAGGATAATTGTAATTACGCGTGAAACGTGTTTCATGCCATGCCAAATCTATTCCAGGCTATGTCATT
TATGGGATGCCACCTAGGGAAATAATTCAAACATTTCCAAAAATCCAAGGGGAAAATAAAGAAATAAAAGCCAAGCCCCT
CTCTATCGGGAAACAAGAGGAAAAGGAGAAGGGGAACAACCAAAGAAAAGACTAGAAGAGAGAGTGGAGGCGAAATTATC
CAACCCGCGTGTCCATGGCAACCCACCCACACTAATCTTCCATGAAAAACCTACAGCGCAAGGTACAACCAGTGAAGGGG
AAGATGGAGCCGAAGCCCAAGAGGAAGAAGACCAGGGCGGCGGCGCCAGCAGAGGTGGAGGAATTCACGGCGCTTGAGCT
GGAAGCGGCTGAGCAACTCATCCGCCTTAGCGAGAGCAGCGTGTCCTTGGGCACCCTGCGCGTCCTCCCCGTCGCCCCCT
GCGTGGCGCTCTCGGGTCAGTCCTCCTCCCCTCCGCGCTCCACGAAGGCCCCACCAGCGCCGCCGGCTTCGGGCGCCATA
ATTCTTGGTGGTTCCGAGGACTGGGAGGAAGATGAGGAGCATGAGGTGGCCGGGAGGCAGCGGAGGGTGAAGCGCTACCG
CCTGATCAGCGAGATCTACGCCGCAACGGAGCCAATTGGCGAGCGCACCGGTAGCAAACAA---AACAAGAAAAGGG---
AGTAGACGAGGAGAGATTAGTAAGGAGAGGCACCTTCTTGTAATTCATGTGATTTCTCGGGGGGTAGATCGTAGGTTGAG
CTTGTAGTCCTCTCCTTCCTCTGACCGGGAGGCGGGG----------------------TGTTAAAACTTATCTTTGCAC
TAAGAAG-AATTGTTGGTTGGA--------GCTGAATCCATTCATGGCAGCTTATGTACTCTGAAATGAATTGGTTTTGT
TTGTTTCATACTGTGTTGCTAGCTGGCTAGACTGGATGTCTGCTAACTGGTCCTATTTGCAGATCGATGGTCTCACTCGA
GAAGATGATCAGATCAGCTCCAGCCATGGTTGTGGCTTCGTAGCTCACAACCCTGTGCGGCACTACACGACTGATCGATG
CCTATTTGCATTCAGTTTTGGCAATTCATTACTCCAACGAACATGCGAGTGCTTCAGACCGGTTTGAGCCCGGACCCGGC
AGATGGCTTGGTCGTGGCCTTCGGTTTTAGATGTTAGGTTTAGGTGAGAGGTATGGGTATGTGGCCCAGCTTGCACCCTT
CATTATTCTGATAGAAGTAGCGGCAGATGCTGTCAAGATGGCGGATTCAGACATATTGTTGTTATACTTTGTAAGGTCCT
CGAGAATAATCAATAAAATGGTCGTATGCATCTCCCAGATGCAGAGGCCGGGTGGCATCCTCCTTTTTCGAAAAAAAACG
AACATGCGAGTGTGAGTCACAAAAATCTTGATTGAGTGATTCATGAAATTTAGTGTATTGTTTATTTGATTCTAGTACAG
ATGAGGTGCATCTCCCTGGTCTCGGAGTTCAATTTCCTGCAGAAATGCTTGCTGCGTGCACACAGAACTATATATCAGCA
GATATGGTGGAGGCCCGAGTCTCTTCCTCCAACAATGAGCGTGTTCTGCCAATACAACCTTTTGCCTCATCACATTAGTT
AGTCGATTCAGGCAAGTCCCAACTTGTTGCATGCGACATGGCGGGATGTGGTCAATCTGGCTGCTGGATCAGAGAC
>chr5A_1
CAAAAGAGCAAGGGGACATAGAGAAATATGCAATTGTAACAACAAGTGTATATAGTATGAATATGCAATGGTAACAAGGA
TTATCTATATAATGTAATCTAAACTATGTGTATACCTAGCCATGTGAATGTGGAACGGTTACAACGAGTGTGAAACCAGG
CCTGAAATAAGTTACATACCATATATCATGATAGGAAATAACTATGGTAGGGAAATCTATAGCATGAACATACAACATCT
GAGGACCTCTAGCGCCACACGTCGACGGTTC-CCTGACCCAACAATTCGTTGGACAAAGCCAATTAGACGTGTTACACGT
TTGATTAACCAGACAACTCACAATGTGACATGCGTCC-------------------------------------------
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---------------------------------------------------------------ACACGGTGATGCGTATT
TGCGTTGGATTATAAGATAATGGTAATTACGCATGAAACGGT-----TGTCATGCCAAATCGATTCCAGGCTATGTCATT
AATGGGAAACTACCTAGGGAAATAATTGAAACATTGCCAAAAATACAAGGG-AAAATATAGAAATAAAAGCCAAGCCCCT
ATCTCTCAGAAAACAAGAGGAAAAGGAGAAGGGGAACAACCAAAGAAAAGACTAGAAGAGAGAGTGGAGGCGAAATTTGC
GAACGCGCGCGTCCATGGCAACCCACCCACACAAATCTCCCATGAAAAATTTACAGTGCAAGGTACAACCTGCGAAGGGG
AAGATGGAGCCGAAGCCCAAGAGGAAGAAGTCCAGGGCGGCGACGCCAGCAGAGGTGGAGGAATTCACGGCGCTCGAGCT
GGAAGCGGCCGAGCAGCTCATTCGCCTTAGCGAGAGTAACGTGCCCATGGGCACCCCACGCGTCCTCCCCGTCTCCCCCT
GCATGGCGCTCTCAGGTCAGTCCTCCTCTCCTCCGCACTCTGCGAAGGCCACGCCAGTGCCGCCATGTCCTGGCGCAATA
ATTCTTGGCGATTCCGAGGATTGGGAGGAAGATGAGGAGCACGAGGTGGCCGGGAGGCAGCGGAGGGTGAAGCGCTACCG
CCTGATCAACGAGATCTACGCTGCGACGGAGCCAATTGGCGGGCACATCGATAGCACCCAGAAGAAGAAGACGAAGAGGG
AATAGACGAGGAGAGATGAGAGAGGAGAGGGACATTCTTGTAATTCATGTGATTTCCAGGGGATTGCTT-GTAGGTTGAG
CTTGTAGTCCTCTCCTTCCTCTTACCAAGAGGCGAAGGCGCTATCATTATCTTTCTCGCTGTCAAATCTTATCTTTGCAA
TAAGAATTAATTGTTGGTTGGGGGCTTGGGGCTTGATCCATCCATGGTGGCTTGTGAACTCTGAGATGAATTGGTTTTGT
TTTTATCATACTGTGTTGCTAGCTGGCGAGGCGGGATCCCAGCTAACTGGTCATCTTTGTAGATGGATGGTCTCCCTTGC
AAAGAGGATCAGATCAGCTCTAACCATGGTTGTGGCTTCATAGCTCACGATTCTGTCCGCCGCTGCATGACTGGTCGATG
CCTATGTTTATTCAACTTTGGCAATTAATTACTCCTAGGCACATGCGAGT------------------------------
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>chr5D_1
CAAAAGAGCAAGGGGAAATAGAGAAATATGCAATTGTAACAACAAGTGTCTATAGTATGAATATGCAATGATAACAAGGA
TTTTCTATATAATGTAATCTAAACTATGTGTATACCTAGCCATGTGAATGTGCAGTGGTTACAACGAGTGTGAAACCAGG
CCTGAAATAAGTTACATACCATAAATCATGATTGGAAAAAACTATGGTAGGGAAATCTATATCATAAACATACAACATGT
GAGGACCATTAGCACGACACGTCGATGGTTGTCCTGACCCAACAATTTGTTGGACAAAACCAATTAGACGTGTTGCACGT
TTGATTAACCAGACAACTCACAATGTGACACGCGTCC-------------------------------------------
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---------------------------------------------------------------ACACGGTGATGCGTATT
TGCGTTGGATTGCAAGATAATGGTAATTACGCGTGAAACAGT-----TGTCATGCCAAATCGATTCCAGGCTATGTCATT
TATGGGAAACCATCTAGGGAAATAATTAAAACATTTCCAAAAATACAAGGGGAAAATAAAGAAATAAAAGCCAAGCCCCT
CTCTGTCAGAAAACAATA--------------GGAACAACCAAAGAAAAGACTAGAAGAGAGAGTGGAGGTGAAATTAGC
CAGCACGCATGTCCAT-GCAACCAACCCACCCCAATCTCCCATGAAAAACCTACAACGCAAGGTACAATCGGTGAAGGGG
AAGATGGAGCCGAAGCCCAAGAGGAAGAAGTCCTGGGCGGCGGCTCCAGCGGAGGTGGAGGACTTCACAGCGCTTGAGCT
GGAAGCGGCCGAGCAGCTCATCCGTCTTAGCGAGAGTAACGTGTCCTTGGGAACCCCAAACG---TCCCCGTCTCCCCCT
GTGTGGAGCTCTCAAGTCAGTCCTCCTCTCCTCCGCACTCCGCGAAGGCCCCGCCTGTGCCACCGGCTCCTGGGGCAATA
ATTCTTGGCGGTTCCGAGGATTGGGAGGAAGATGAGCAGCATGAGGTGGCCGGGAGGCAGCGGAGGGTGAAGCGCTACCG
CCTGATCAGCGAGATCTACGCCGCGATGGAGCCAATTGGCGGGCACACCGGTAGCAACCAT---AAGAAGAAGAGGGGGG
AGTAGATGAGGAGAGATGAGAGAGGAGAGGGACATTCTTGTAATTCATGTGATTTCCAGGGCGTAGCTT-GTAGGTTGAG
CTTGTAGTCCTCTCCTTCCTATCACCAGGAGGCAGAGTCTCTATCGTTATCTTTCTCGCTGTTAAATCTTATCTTTGCAT
TAAGAGTTACTTGTTGGTTGGG---------CTAGATCCGTCCATGGTGGCTTGTGAACTTTGAGATGAATTGGTTTTGT
TTTTCTCATACTTTGTTGCTAGCTGGCTAGGCGGGATCCCGGCTAACTGGTCATCTTTGCAGATGGATGGTCTCCCTGGC
AAAGAGGATCAGATCAGCTC------------------------------------------------------------
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>SNPs
-------------------------------------S------------------------------S-----------
S-S---------------S-------------------------------S--------S--------------------
-S-S------S---------------------------S---------------------------S--------SS---
---S-----S----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----S-------
S--S---S-S----S------S------------------SSSSSSS--S-----------S------------------
-------SS------------------S----------------S-----------------------------------
----S--S-S--------------------------------------------------------------------S-
----S---------------------------S-----S-------------------------------S---------
------------------------------S-------------------------------------------------
---------S-----S--------------------S-S-----------------SS---------------S------
-------------S--------------S-------S----S----------S----S----------S-S-----S---
--------S-----------S-----------------------------------------------------------
------------------------S----------------S--S------------S--S-----S-----S-------
-----------------S--SS--------S--S----------------------SS-----S-SSS-S----------
----------------------S---S--------S------------------------------S------------S
------S--------------S-----------SS------S-----SS----S--S-------S---------------
--S-S-------------------------S-S----SS-S-----------S-S---------S---------S--S-S
S----S--------------S-S----------------S--------S-SS----S--S-S--S--S-----S------
-----S-SS-----SS----------S--------S-S-S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_162
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--------------------------------------------------------------AACGAGTGTGAAACCAGG
CA------------------------------------------------------------------------------
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>reverse_2158
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-----------------------------------------------------------------------------ACG
AACATGCGAGTGTGAGT---------------------------------------------------------------
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