>input_sequence_80347
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----------ATGGCCAGCGCCACCGCGTCCCCTTGCACCATCGAGCCCAGGAGATGCGGTTCGCTGCACGGGGCCATCA
CTGACCAGCGGCGGCGTGGGGAAGCTTCGAATCCAGGCGGCCTGGAGGGTGATGGCATGGGCCACTGGAGCATACTGGGC
GACCAGAGCCTGATCAAAGTTGTATCGGCCTTGAGCAGCGGCGAGTTCTGCGCCCCGGCGCGGTTCGATCTCGGGATCAC
CGACAACAGAGATGTTGGGGACGCCGGCGGGGTGAGGGGCCTCCTGAGATCGCCTCCTGGCAGCGCGGGGAGAGGCCTGA
TGAGAAGGGCTGCGCCCACGGGCGCCCGCAGACTGGCGGCCCAGCATAGGTTGGAGTTCGAGCCTCACCGTCTTCGGAGT
TGGAGCCACCTAGCAGACCGGAGGCGTGCCCTTCCACTTGACCAGTAG--------------------------------
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>chr5A_1_TraesCS5A01G057000
GGCGGTTATTTTGCGGGTCGAGGCGTTTTGGAGGGTCTGCTAGAGTTGCTCTAATCCTTCCACTGTATTGAATAAAAATT
CATCATACATTGCAAAACCTATATAGAAAAGAAATGTGCAAAGCACAGGAAAAACCGAAGAATAC------CTGTGAAAA
GATAAAATAAATCC--AA-AAAAACACGTACAAAAAAA-----ACAGTCAG-AAAAAATCAACACGTGTCTAATCTAAAT
GTATATATATACA--AATTCGCCTCTACAATGTAGTACGTACGAATGGAATGTCGAGTGGT---------------CGCG
CACTTGACTGAATGGCGGTACGTCTCGGGTTCGATTCACATATGTGCGCGTAGTTTTTGTCGTTGTTTTTATTTCCCTAC
CTGACTGACAAATGG------------------ACCCACACATGGTACAGAGAGAACGCCAGGGCCACATACACGCAGTT
AACAGCGGTAGGCGGTGCGCCGTTAGAGTTGACGGAAATTGTACCAAAATGTGTTGTTAGATAAATTAGTGTACTATTTT
TCTGGGGTTTTTTTAGTTTATGTATGATTCTGTTAATTCACTGCAAGTTCTTGTAGTACAGATGTAATTAACTCTATATA
TGTTATGTTTTTCAGGTCAGGGAGCTTATTATTCAGTTAAGATTGTGCTACTAGCTAGGAAGAAACACGACAAAAAATTC
TGACAGTCAGAATGCAAGAGAAAACATAATGGTTTTTATGGTCTCAAGTGCTCCAGAGGATGCATGCAGAGAAAAAACAC
AGGAGGAGGAGCTGCTCTGCTCTGTTTCGGGGGAAAACAAAACAATACTTATTCGCTTGATTAAAGTCTTCTTGTCCTCT
TAATACGATGGATGTTGCTTACAAATGTTGGGATGAATTCAAAGGTGAAATACGATGATTTGCTTAACTCGTGCAACTTT
TCTGCTTTCTGAGGCCCGGCTGAAAGGACCCTGCTGAGGTACGGCAGGTAACCGGGCGGAGCCAGGAGGCCCGGCTGACG
CTCCGCAAAGATGGCCAGCGCCACCGCGTCCCCTTGCACCATCGAGCCCAGGAGATGCGGTTCGCTGCACGGGGCCATCA
CTGACCAGCGGCGGCGTGGGGAAGCTTCGAATCCAGGCGGCCTGGAGGGTGATGGCATGGGCCACTGGAGCATACTGGGC
GACCAGAGCCTGATCAAAGTTGTATCGGCCTTGAGCAGCGGCGAGTTCTGCGCCCCGGCGCGGTTCGATCTCGGGATCAC
CGACAACAGAGATGTTGGGGACGCCGGCGGGGTGAGGGGCCTCCTGAGATCGCCTCCTGGCAGCGCGGGGAGAGGCCTGA
TGAGAAGGGCTGCGCCCACGGGCGCCCGCAGACTGGCGGCCCAGCATAGGTTGGAGTTCGAGCCTCACCGTCTTCGGAGT
TGGAGCCACCTAGCAGACCGGAGGCGTGCCCTTCCACTTGACCAGTAGTCGGCGCGAGCTGGATGTCAGAAGGGGCACCG
ACGCGCCTGTGCCCACCCGAGCGGTGTCTGGAGCGGACTTGACCGTTGTCCTGCTGCCGGTCGCGTGCGTTCCGGGAGAT
CGAGCGGCGCAAACGGGCGCCCCAGCCCTCACGAGGGCCGCCACCGTCGCGCCCACGGCGCCCGTCGCAGTCGTCGTCGT
CATCCCGCCTACCATGACGCGCTGGCGCAGCCCGCCTGTCCCTTGGGATGGCACTGGGGTCAGTGGTCCACGCCCAGACC
GGAGGCGTCACCCGGGCAGGCAGGCGGGACGTAGGCCATCGATAAGCTTGAAATGAGGGAGGGGGAAGAAAATAAGGAAG
GATGGAGGACGGGGGAGAGCAGAGCGACCATCAGTGCCAACCATGGAAGAAGATGTAGACCGCGCATAGCCCACACGCGG
TCATCGACACACGGAACAAGCTCCTTACCACCAAGTGACGCGAAGAGGCCAGCACTCCCGCGTGGGCCATAGCCGAGAGA
AGGATTGCCAACGTCGTCGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCCTAATATTATTAGGCTTGAATATCAAAGATTTTTGAG
AGTTCATACATAATTTATCTTCTTCGCCCCATCAACTTTGGTTAGCGCCCTCAACAATCTTTATCAAGCTCCGCCACTGG
CCGTGGACACGAAAGCTTGCTCCGGCGCGACCGCTAGGGCCACAAGCCCCGGCGTGGCGCCGACCCAATAGCCGACGACC
GTGACGAAGAGGTGGGCGGTGGCCCCCATCCAGTTGTGTATTGTCTCAGTGCATGCCTCCGCGACAAGGAGCTTCACAAA
GTCCACGA
>chr6B_51
--------------------------------------------------CTAATCCTTCGACCGTATTGAATTAAAGTT
CATCGTATATTGCAAAACCTATATAGAAAAGAAATGTGCAAAACACAGGAAAAGCCGAAGAATAC------CTGTAAAAA
GATAAAATAAATCCGAAAGAAAAACATGTACAAAAAAAT-GAAACAGTCAGAAAAAAATCAACACGTGTCTAATCTAAAT
GTATATATATATACGAATTCGCCTCTACACT---GTACGTAGGAATGGAATGTTGTAGTGCTCTGCTGCTGCTCAACGCG
CACTTGACTGAATCAGGGTACGTCTCGGGTTCGATTCACTGATGTGCGCATAGTTTTTATTGTTGTTTTTATTTCCCTAC
CCGACTGACAAATGG------------------ACCCACACAGGGTACAGTGAGAATGCCACGGCCAAATACACGCAGTT
AACAGCGCTGGACGGTGCGCCGTTAGAATTGATGGAAATTGTATCAAAATGTGTTGTTAGATAAATTAGTGTACCATTTT
TCTGAGA-TTTTTTAGTTTATGTATGATTCTGTTAATTCACTGCAAGTTCTTGTACTACATATGCAATTAACTCT-----
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>chr6D_51
--------------------------------------------------CTAATCCTTCGACCGTATTGAATAAAAGTT
CATCATACATTGCAAAACCTATATAGAAAAGAAATGTGCAAAACTCAGGAAAAACCGAAGAATACCTAGATCTGTAAAAA
AATATAAAAAATCCGAAA-AAAAACACGTACAAAAAAGACGAACCAGTCAG-AAAAAATCAACACGTGTCTAAGCTAAAT
GTATATAAATAT----ATTCGCCTCTTCGCT---ATACGTAGGAACGGAATGGTGTTCTGGT---CTGCTGCTTAACGCG
CACCTGACTGCATGAGGTTTCGTCTCGGTTTCGATTCACGGATGTGCGCATAGTTTTT-TCGTTGTTTTTATTTCCCTAC
CCGACTGACAATTGGGAGAGAAAACGCTACCCGACTGACAAAGGGTACAGAGAAAACGCTAGGGCCTCGTACACGCAGTT
AACAGCGGCAGACGGTGCGCCGTTAGAGTTGACGGAAATTGTATAAAAATGTGCTGTTAGATAAATTAGTGTATCATTTT
TCTGGG-GTTTTTTAGTTTATGTATGATTCTGTTAATTCACTGCAAGTTCTTGTACTACAGATGTAATTAACT-------
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>chr3B_52
---------------------------------------------------TAATCCTTGAACCGTATTGAATTAAAGTT
CATCAT-TATTGCAAAACCTATATAGAAAAGAAATGTGCAAAACACAGGAAAGCACGAAGAATAC------CTGTAAAAA
GATAAAATAAACCCGAAAGAAAAACACGTGCAAAAAAAT-TAAACAGTCAGAAAAAAATCAACACATGTCTAATCTAAAT
GTATATATATACG--AATTTGCCTCTACACT---ATACGTAGGAATGGAATGTCGTAGTGCTT---TGCTGCTTAACGCG
CACTTGACTGAATGAGGGTACGTCTCGGGTTCGATTCACTGATGTGTGCATAGTTTTTATCGGTGTTTTTATTTCCCTAC
CCGACTAACAAATGG------------------ACCCACACAGGGTACAGAGAGAACTCCAGTGCCACATACACGCAGTT
AACAGCGCTAGACGGTGTGCCGTTAGAATTGATGGAAATTGTATCAAAATATGCTGTTAGATAAATTAGTGTACCATTTT
TCTGGG-TTTTTTTAGTTTATGTATGATTCTGTTAACTCACTGCAAGTTTTTGTACTATAGATGCAATTAACTC------
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>chr3B_52
---------------------------------------------------TAATCCTTGAACCGTATTGAATTAAAGTT
CATCAT-TATTGCAAAACCTATATAGAAAAGAAATGTGCAAAACACAGGAAAACACGAAGAATAC------CTGTAAAAA
GATAAAATAAACCCGAAAGAAAAACACGTGCAAAAAAAT-TAAACAGTCAGAAAAAAATCAACACATGTCTAATCTAAAT
GTATATATATACG--AATTTGCCTCTACACT---ATACGTAGGAATGGAATGTCGTAGTGCTT---TGCTGCTTAACGCG
CACTTGACTGAATGAGGGTACGTCTCGGGTTCGATTCACTGATGTGTGCATAGGTTTTATCAGTGTTTTTATTTCCCTAC
CCGACTAACAGATGG------------------ACCCACACAGGGTGCAGAGAGAACTCCAGTGCCACATACACGCAGTT
AACAGCGCTAGACGGTGTGCCGTTAGAATTGATGGAAATTGTATCAAAATATGCTGTTTGATAAATTAGTGTACCATTTT
TCTGGG--TTTTTTAGTTTATGTATGATTCTGTTAACTCACTGCAAGTTTTTGTACTATAGATGCAATTAACTC------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S-------------S--
------------------------------------------S--------------------------------S----
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-----------------------------S-SSS-------S-------------SSSS-S-------------------
--------------SS-----------------------SS--------S--------S---------------------
-S----------------------------------------S-------------------------------------
-----------S-------------------------------S------------------------------S-----
------S------------------------------------------------S-------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_999
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-------------------CTGAAAGGACCCTGCTGAGG-----------------------------------------
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>reverse_1923
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--ATCGACACACGGAACAAGCT----------------------------------------------------------
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