>input_sequence_80313
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----------------------------ATGGCTACCACCAGCTGT------GCCCTCCTCGTCGCCCTCGTCGTCCTGG
CCGGCCTCGCCGACCTGCAGGCCGCCGCAGCCGCCCCGAGGCCCGTTCACGCCGCGGAGCACTTCTCCATGGCGGCAATG
ACGGCGGAGCACCCAATGGCGGACGAGGCGGACCCGGACCTGAACGGGATGATGCAGTGCATGTTCGGGTGCTTCACGTC
GGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCC---CCGACCTGCCGCTCTGCGTCATCAGCTGCAACCAGAAGA
GCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGGCTCCCAAGCCGCCAACGCCACCCGGGCCGCCCGCA
CCCAAGCCGGCACCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCGGTCAAAACACCAAGACCTCCCCCTAG-----
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>chr1D_1_TraesCS1D01G256200
TTTTTGAAATTACTACGTTCCCCAACAGTGGTTAGCTGGAGTTGAGCAGAGTACTGCGGCTCATATTCGGATTGGAATAT
GTGCATTATTATGGGCTATATGGAACTGCAGGAATGACATGATTTTTAACAGACAACACACTTTAACTTTCTTGCAGGTT
ATCTTCAGGGCTACAGTTTGGATCCGTACGTAGTCCTTATTCACTCCTATGGACTCCAGGGAGCCTTTGGTCACTGGGTG
CAACCAATGGAAGATGGTAGCTCGGGCTATATTCAACCGGTTCGGATGGCGCTCGCATAATAGGATAGAAGTCTAGGGAG
CTTATCCTTCTTATTATCATATCGGTTGATCATGTCAGCATGTTATTTTCCTTTTGTTCACTTTGTTTTGCTCCGTTTGT
GAGCTGTAAGACCTTTTTGACGATTTTGTTCGGATTATTAATAATATGGCTGCAAGCAAATGTAGAGGCCGGGGGCATGC
CTCCATTTCCAAAACAAAAAAAAAATCCCTTTCTTAGGCAAACGCTGAACCCATGAGGGCCATGATCTTGC--TATGGAC
GCCGTCCTTCCTGCCAGGCTGCCACTGACCACGTTGCCAAACTTCTCGC-CATGCTCAATGGACACGAAGGTCGACATTG
CCTCGATGTT------ATGCTTCGGTGACATATATTGTAAGATTTCCAATAAAATGGCGTGACATAATCAACAGCAAAAT
AAACGCCATTCACTTATTGTCCAACAAACATTTTTTGCTAACTACTCCAGTAGTATACGTACATAT--------------
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---------------ATTTCTTCGTTCACACATATTCCATGCATGCATCCATACGCTGGTCACCCACATCGTGTGTGTCC
GCTTGCGTGCGCGGAAAAGCAACAGCAGAACACACCAAAAATGCA----AGTCGAGGGCGATACGCCACGCTAAACCCAG
C----CAGG-CCCCCTATAAAAACCAT-C-TC--ATCAGTGAACAGCTCACTACACAAA-CCC-----ATCGACCGATCA
CCA--------CA-CACAGCA--GCAGCATGGCTACCACCAGCTGT------GCCCTCCTCGTCGCCCTCGTCGTCCTGG
CCGGCCTCGCCGACCTGCAGGCCGCCGCAGCCGCCCCGAGGCCCGTTCACGCCGCGGAGCACTTCTCCATGGCGGCAATG
ACGGCGGAGCACCCAATGGCGGACGAGGCGGACCCGGACCTGAACGGGATGATGCAGTGCATGTTCGGGTGCTTCACGTC
GGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCC---CCGACCTGCCGCTCTGCGTCATCAGCTGCAACCAGAAGA
GCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGGCTCCCAAGCCGCCAACGCCACCCGGGCCGCCCGCA
CCCAAGCCGGCACCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCGGTCAAAACACCAAGACCTCCCCCTAGAC---
-GCCGACGATTGCCATGCATGCATGATGCCAGTAGTATGGTACTATACGAATTAACTAAAAAAGAAGCCACATATATCAT
GGAGG--TACCCAGATATATAAATAGGGCTCGATACATAACTTATAGCTGGATCCCAACACTTATATATCTAGATTTATG
CCCCTCAAAAAAAG---ATATCTAGATTTATGTTATTGCAGTAGAAACAATGTCATATATGACCCATGGTGATTGTACTT
ATACTATTCATGCAATATATATGTATATATACATTGGTGTAAGCGTGCAAATATGTAATGATAGCTCTATTAAA------
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CCATGTTCTCAAAGTCAAAGTTGTTAAAGAACACTCTGTGTCAGCATCAAGTAGATTATGTGGTAAAACCATGTA-TT-T
TTTTCACAAATGATAGGTTAAGCTAGATTTTATAAGTGTTCCCCGTCTTACATTGTATTTTACACACGAAATCCTCAATT
GAATCTGGCTCAACCTATCAATTTGTGCATCTTATCTCTTTTGTCAAAATAAACTAATCCAAAACATCTCACGTGCAACA
CGTAGGTGAACCTTCTGAAGATTGTAAACCACATGTCCTTGTCAAACACCATATTGCTGTGTACGTGACAAGGGGCTGCC
GCACCATATCTTGCTATGCATATCTTGATAGTTCGGTTAGGTAGTTAGCTAGAGTCTATCTTCCCTTTGTAATCTTATCT
CTATCTAGCTTTCTCTCCAAAATGTAATCTAAACTGTATGCGCTATCAGGGAGGTGCGCCCCTGCCTATAAACACGTAAG
GCGTCCCCTCGAGTTGAGGTACGACGCTTTCCGCCATCGCACATGGTAATCAGAGCCCTTCTCTTCCACAACGTCTAAAC
CCTAAAACTCCATCCAGTGCAAATCATGTCGTCCTCCTCTGGTGCCTCCCAGGCTAGCCTCAACGGCCAAGTCACGGAGA
GGCTCTCCCGCACCAACTACGTCCTCTGGCACGCACAGATCACGCCGCAGCT
>chr1A_506
TCCT----------------------------------------------------------------------------
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-----------------------------TTTCTTAGGCGAACGCCGAACCCACGAGGGCCATGATCTTGCTATATGGAC
GCCGTCCTTCCTGCCAGGCTGCCACTGACCACGTCGCCAAACTTCCCGCCCATGCTCAATGGACAGGAAGGTCGACCTTG
CCTCGATGTTGTATATATGTTTCGGCCACATC--TTGTAAGATTTCCAATAAAATGGCGTGGCATAATCAACAGCAAAAT
AAACGTCATTCACTTATTGTCCGACAAACATTACTTGCTAACTATAGTATATTTTTTTGCGGGTAAACTCCTGTATTACT
CAAATCACATTGTTCGTACAATCAGCTTTGGCAAGCTCTAAAGAATCTATCGGGCCAGAACCAATCACAGTCATCGTTGT
GCCCTCTAGTCTAGCAAATTTAGCTAAGCTATATCTCCAACCTTATTTTGATTGTGATTTACATGAGTAACACAGGAATC
ACGAAGAGACGTAAGGTGCCTAATCTCTCTAACTATAGAAGATTATATCGATCTATCAAGATCCGAAGCTTGAATCAGTT
TGACGGCGATGACAGAGTCCATTTCAACTATAATTGGCAAGTCACTCCTCTGAATAGCAAAAGACAGTCGTCCTTCCATG
CAAGCACAAATTTCAGCTTTAAGTGCTTCCCAGCAAGAGAAGAGTTGTCTACACGCTGAGTAAATAATGTGACCTCTATC
ATCTCGCGGCAACCGTACCAGGCTACCAGCACCAGCCGTGCCATCCTCTGCAGATGACCCATCGGTATTCAGTTTCACCA
TCCTGGCGTATACACATTCCTTCGTTCACACATATTCCATGCATGCATCCATACGCTAGTCACCCGCATCGCGTGT----
------GTGCGCGGAAAAGCAACAGCAGAACACACCAAAAATGCATGCAAGTCGACGGCAATACGCCACGCCAAACCCAC
C----CCTA------TA--TAAACCAT-CGTCTCAGCAGTGAACAGCTCACCACACAAA-CCG-----ATCGACCGATCA
CCACACGTCCACACCACAGCA--GCAGCATGGCTACCACCAGTCAT------GCCCTCCTCATCGCCCTCGTCGTCCTCG
CCGGCCTCGCCGACCTGCAGGCCGCCGCGG---------GGCCCGTTCACGCCGCGGAGCACTCCGCGGCGGCGGCAATG
GCGACGGCGTACCCAATGGCGGACGAGGCGGATCCGGACCTGAACGGGATGATGCAGTGCATGTTCGGGTGCTTCACGTC
GGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCC---CCGACCTGCCGCTCTGCGTCATCAGCTGCAACCAGAAGA
GCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGAGCCCCAAGCCGCCAACGCCACCCGG---------G
CCCAAGCCGGCGCCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCCGTCAAAACACCGAGACCTCCCCTTAGACGTA
CGCCGACAATTGCCATGCATGCATGATGCCAGTAATATGGTT---TACGAATTAACTAAAAAAGAAGCCGCGTATATCAT
GGAGGTATACCCAGATATATAAATAGTGCTCGATCCATAATTTATAGCTGGATTTCAACACTTATATATCTAGATTTACG
CCCCTCAAAAAAATTATATATCTAGATCTATGTTATTACAGTAGACACAATGTCATATATGACCCACGGTGATTGTACTT
ATACTATTCGTGCAATATATATGTATATATACATTCGTGTAAGCGTGCAAATATGTAATGATAGCTCTATTAAATT----
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--ATGTTCTCAAAGTCAAAGTTGTTAAAGAACACTCTGTGTCAGCATCAAGTAGATTATGTGGTAAAACCATGTAATTAT
TTTTCACAAATGATAAGTTAAGCTAGATTTTATAAGTGTTTCCCGTGTTACATTATATTTTACACACAAAATCCTCAATT
GAATCTGGCTCGACCTATCAATTTGTGCATCTTATCTCATTTGCCAAAATAAACTAATCCAAAACATCTCACATGCAACG
CGTAGGTGAACCTTCTGAAGATTGTAAACCACATGTCCT-----------------------------------------
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>chr1B_776
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----------------------------------------------------------------AT--------------
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---------------ATTTCTTCGTTCACACATATTCCATGCATGCACCCATACGCTGCTCACCCGCATCGCGTGTGTGC
GCGTGCGTGCGCGGAAAAGCAACAGCAGAACACACCAAAAATGCATGCAAGTCGACGGCAATACGCCTCG--AAACCCAC
C----CCTA------TA--TAAACCACAC-TCTCATTAGTGAACAGCTCACCACACAAA-CCG-----ATCGACCGATCA
CCA--------CACCACAGCA--GCAGCATGGCTACCACCAGCTGT------GCCCTCCTCATCGCCCTCGTCCTCTTCG
CCGGCCTCGCCGACCTGCAGGCCGCCGCAGCGGCCGCGAGGCCCGTTCACGCCACGGAGCACTCCTCCGTGGCGGCGATG
ACGGCGGAGCACCCAATGGCGGACGAGGCGGATCCGGACCTGAACGGGATGATGCAGTGCATGTTCGGGTGCTTCACGTC
GGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCC---CCGACCTGCCGCTCTGCATCATCAGCTGCAACCAGAAGA
GCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGAGCCCCAAGCCGCCAACGCCACCGGCGCCGCCCGCG
CCCAAGCCGGCACCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCCGTCAAAACACCGAGACCTCCCCCTAGACGTA
CGCCGACAATTGCCATGCATGCATGATGCCAGTAATATGGTATG---CGAATTAACTAAAGAAGAAGCCACATATATCAT
GGAGGTACCCG--GATATATAGATAGTGCTCGATCCATAACTTATAGCTGGATTTCAACACTTATATATCTAGATTTACG
CCCCTCAAAAAA----TATATTTAGATTTATGTTATTACAGTAGAAACAATGTCATGTATGACCCACGGTGATTGTACTT
ATACTATTCATGCAATATATATGTATATATACATTGGTGTAAGCGTGCAAATATGTAATGATAGCTCTATTAAATCATGT
TCTCATGGTCGCATGCATCTATCGGATGCATAGGCCCGGGGTGATCCTCCTCCGCAAAAAAATAAAAAAATAAAAATAAA
CCATGTTCTCAAAGTCAAAGTTGTCAAAGAACACTCAGTGTCAGCATCAAGTAGATTATGTGGTAAAACTATGTA-TTAT
TTTTCACAAATGATAGGTTAAGCTAGATTTTGTAAGTGTTTCCCGTGTTACATTGTATTTTACACACGAAATCCTCAACT
GAATCTGGCTAAACCTATCAATTTGTGCATCTTATCTCTTTTGTCAAAATAAACTAATCCAAAACATCTCACGTGCAACA
CGTAGGTGAATCTTCTGAAGATTGTAAACTACATGTCCT-----------------------------------------
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>chr4B_776
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----------------------------------------------------------------AT--------------
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---------------ATTTCTTCGTTCACGCATATTTCATGCATCCTACGCTTAATCA-TCACCTGTATCGTGTGTG---
---TGCGTGCGCGGAGAAGCAACGGCAGGACACACCAAAAATGCA----AGTCGGGTTTGGTACGCCACGCTAAGCCCTG
CATGCCAAATCCCACTATCTAAACCAT-C-TCTTATAAGTGAACAGCTCACCACACAAAACCC-----ATCGATCGACCA
CCG--------CA-AGCACAAGGGCAGGATGGCTACCACCACCAGCTCCACCGCCCTCCTCATCGCCCTCGTCGTCCTGG
CCGGCCTCGCCGACCTGCACGCCGCCACAGCCGACCCGAGGCCCGTCCACGCCGCGGAACTCTC---GGTGCCGGCATGG
GCGGCCGGGCAGCCAATGACGGC---------CCCGGAGCTGGAAGGGATGATGGATTGCATGATGGGGTGCTGGACGAC
GGTGATGGGCTGCGTATTCGGGTGCATGGCCAAGCCCCCCGCCGACATGCCGGTCTGCTGGTTCAGCTGCGACCAGACCT
ACGTTATGGGCATGATCAAATGCGCCCTCACGCCCTCGCCGCCGGC----------------------------------
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>chr4D_849
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------GTGCGCGGAGAAGCAACGGCAGGACACACCAAAAATGCA----AGTCGAGTTTGGTACGCCACGCTAAGCCCTG
C----CAAATCCCACTA--TAAACCAT-C-TCTTATCAGTGAACAGCTCACCACACAAA-CAAAACCTATCGATCGATCA
CCTCCACA----ACCACAACA--GCAGGATGGCTACCACCACCAGCTCCGCCGCCCTCCTCATCGCCCTCGTCGTCCTGG
CCGGCCTCGCCGACCTGCATGTTGTCTCAGCCGACCCGAGGCCCGTTCACACCGCGGAACTCTC---GGTGCCGGCATGG
GCGACCGGGCAGCCAATGACGGC---------CCCGGAGCTGGAAGGGATGATGGAGTGCATGATGGGGTGCTGGACGAC
GGTGATGGGCTGCGTATTCGGGTGCGTGGCCAAGCCCCCCGCCGACATGCCGCTCTGCTGGTTCGCCTGCGACCAGACCT
ACGTTATGGGCATGGTCAAATGCGCCTTCACGCCCTCGCCGCCGGCACCGGCGCCCCCCAAGCCACCTGCCCCGCCCGC-
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>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-----S-------S--------------------------
----------------------------------S----------S-------------------S----------S---
-------------------S-----SS----SSS---------------------------S------------------
-----S----------------S---------SS----------SSSS-SSSS-S-SS-SSSS-----------------
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-----------------------------------------------------------------S------------S-
--S-----------------------------------------------------------------------------
-------SS----S----SS-------------------------------S----------------------------
-------------------------------------------------------------S------------------
---------------------------------------------------------------S----S-----------
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----------------------------------------------S--------------------------------S
------------------------------------------------S-----------S-------------------
-------S--------------------------S-------SSS-----------------------------------
--------------------------S-------S------------------SS-----------------------S-
-------------S-----------------------S----------------------------S-------------
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----------------------------------------S-----S---------------------------------
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---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_534
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----------------------------------TAGGCAAACGCTGAACCCAT--------------------------
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>reverse_2934
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-----------------------------------------------------AGCCCTTCTCTTCCACAACG-------
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