>input_sequence_80310
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---------------------------------------------------------ATGGCTACCACCAGCTGTGCCCT
CCTCATCGCCCTCGTCCTCTTCGCCGGCCTCGCCGACCTGCAGGC---------CGCCGCAGCGGCCGCGAGGCCCGTTC
ACGCCACGGAGCACTCCTCCGTGGCGGCGATGACGGCGGAGCACCCAATGGCGGACGAGGCGGATCCGGACCTGAACGGG
ATGATGCAGTGCATGTTCGGGTGCTTCACGTCGGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCCCCGACCTGCC
GCTCTGCATCATCAGCTGCAACCAGAAGAGCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGAGCCCCA
AGCCGCCAACGCCACCGGCGCCGCCCGCGCCCAAGCCGGCACCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCCGT
CAAAACACCGAGACCTCCCCCTAG--------------------------------------------------------
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>chr1B_1_TraesCS1B01G267400
ATTGCTTCTCGTCGGACCATAAACGGTGGTGAGCTTGAAGGTTGTGGCCGAGGAGACAATCGTGACATTGCAGGAGAGGT
GGAAGGTGCCAATGCTCACATCCTTCACATCGACGACACTCTCGTCCCATAGCAGCAGGATGCCACCGCGGGTGCCAATG
GCTGGGCGCTGGGCAAAGTTTTTTAGTTTGTGGCCACCAAGGAATGAAGCGACGAATGGGTCGACGAGCTCCAGTTTGGT
CTCTTGTAGACAGACTATGTAGCATGGAGTAGCAGTGATCGTTTCTCTAATAGTTGCTCGACGGTCTGGGCAATTTAAAC
CTCATACATTCCAGTTGAAGATACTAAGATTTTGTTCTATCATGGATAACCTGAGTTACAACGGAGATGGAGCTGTATAG
AGCACACAGGCATCTAGCAACTGGCACTAGCAGCTTCTCGCAATCCTCGGTGAACAGGATGATCGACACTGCCTCGATGT
TGTATGTTTCTAATCAACGGCGAAATAAATGGCATATGCGTGCCTGGCCCGTTTGAATTGTTGCCTCAGACCTGGTTTGT
TTGCTAAGTTTTCAGACCTGGTTGTTTTTATTTTATTTGAGAGAGAGAGCTAGCTGATTAACTGAATAAAATAGGGAGAT
AAAGAGAAATGAGGTGAAAAATTATGTCTCAGACCTGCAACTCCATTTGCTATTATATGCACGTACATATTTCGTACTAG
TTTTACGTAATAGCATCATACACCAGCATTGTCCAAGAAACAGTATTTGCTGGTACATATTTCTTCGTTCACACATATTC
CATGCATGCACCCATACGCTGCTCACCCGCATCGCGTGTGTGCGCGTGCGTGCGCGGAAAAGCAACAGCAGAACACACCA
AAAATGCATGCAAGTCGACGGCAATACGCCTCG--AAACCCA-------CCCCTATATAAACCACACTCTCATTAGTGAA
CAGCTCACCACACAAACCGATCGACCGATCACCA--------CACCACAGCAGCAGCATGGCTACCACCAGCTGTGCCCT
CCTCATCGCCCTCGTCCTCTTCGCCGGCCTCGCCGACCTGCAGGC---------CGCCGCAGCGGCCGCGAGGCCCGTTC
ACGCCACGGAGCACTCCTCCGTGGCGGCGATGACGGCGGAGCACCCAATGGCGGACGAGGCGGATCCGGACCTGAACGGG
ATGATGCAGTGCATGTTCGGGTGCTTCACGTCGGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCCCCGACCTGCC
GCTCTGCATCATCAGCTGCAACCAGAAGAGCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGAGCCCCA
AGCCGCCAACGCCACCGGCGCCGCCCGCGCCCAAGCCGGCACCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCCGT
CAAAACACCGAGACCTCCCCCTAGACGTACGCCGACAATTGCCATGCATGCATGATGCCAGTAATATGGTATG---CGAA
TTAACTAAAGAAGAAGCCACATATATCATGGAGGTACCCG--GATATATAGATAGTGCTCGATCCATAACTTATAGCTGG
ATTTCAACACTTATATATCTAGATTTACGCCCCTCAAAAAA----TATATTTAGATTTATGTTATTACAGTAGAAACAAT
GTCATGTATGACCCACGGTGATTGTACTTATACTATTCATGCAATATATATGTATATATACATTGGTGTAAGCGTGCAAA
TATGTAATGATAGCTCTATTAAATCATGTTCTCATGGTCGCATGCATCTATCGGATGCATAGGCCCGGGGTGATCCTCCT
CCGCAAAAAAATAAAAAAATAAAAATAAACCATGTTCTCAAAGTCAAAGTTGTCAAAGAACACTCAGTGTCAGCATCAAG
TAGATTATGTGGTAAAACTATGTA-TTATTTTTCACAAATGATAGGTTAAGCTAGATTTTGTAAGTGTTTCCCGTGTTAC
ATTGTATTTTACACACGAAATCCTCAACTGAATCTGGCTAAACCTATCAATTTGTGCATCTTATCTCTTTTGTCAAAATA
AACTAATCCAAAACATCTCACGTGCAACACGTAGGTGAATCTTCTGAAGATTGTAAACTACATGTCCTCAATGTATGAAG
TATGAAACTCAAGGAGATAGAGCAGAGGAAATATAAC-------------------------------------------
----------------------------------------------------------------TTTTAAAGTATGAGAA
CAAAAA-TGATAGTGTAGCTCAACTATCAGTTTAGAGCCTCGTGGATG----------------------GAGCAATTGT
GTCTCTTGG-----------------------------------------------------------------------
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---------------------------------------------------------------CCTTGGAACTTCTCAGA
TCAAGGTAAACAAGAAAAAAA-AACTTCACAACATCATCAAAGCAAGGTCTTGCAAGGAAGCTTTTATGTTATCAAGGTT
TCAAGTCTTCAACTGGCTCAACTACCCAATTGAGATGCTCCTCAC-GGGTTTGTGTATACGG-------GCAAGGGAACT
TGGTGCAATTCCATTTAGAATCTGATG
>chr1A_774
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-----------------------------------------------------TACACATTCCTTCGTTCACACATATTC
CATGCATGCATCCATACGCTAGTCACCCGCATCGCGTGT----------GTGCGCGGAAAAGCAACAGCAGAACACACCA
AAAATGCATGCAAGTCGACGGCAATACGCCACGCCAAACCCA-------CCCCTATATAAACCATCGTCTCAGCAGTGAA
CAGCTCACCACACAAACCGATCGACCGATCACCACACGTCCACACCACAGCAGCAGCATGGCTACCACCAGTCATGCCCT
CCTCATCGCCCTCGTCGTCCTCGCCGGCCTCGCCGACCTGCAGGC---------CGCCGC---------GGGGCCCGTTC
ACGCCGCGGAGCACTCCGCGGCGGCGGCAATGGCGACGGCGTACCCAATGGCGGACGAGGCGGATCCGGACCTGAACGGG
ATGATGCAGTGCATGTTCGGGTGCTTCACGTCGGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCCCCGACCTGCC
GCTCTGCGTCATCAGCTGCAACCAGAAGAGCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGAGCCCCA
AGCCGCCAACGCCACC---------CGGGCCCAAGCCGGCGCCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCCGT
CAAAACACCGAGACCTCCCCTTAGACGTACGCCGACAATTGCCATGCATGCATGATGCCAGTAATATGGTT---TACGAA
TTAACTAAAAAAGAAGCCGCGTATATCATGGAGGTATACCCAGATATATAAATAGTGCTCGATCCATAATTTATAGCTGG
ATTTCAACACTTATATATCTAGATTTACGCCCCTCAAAAAAATTATATATCTAGATCTATGTTATTACAGTAGACACAAT
GTCATATATGACCCACGGTGATTGTACTTATACTATTCGTGCAATATATATGTATATATACATTCGTGTAAGCGTGCAAA
TATGTAATGATAGCTCTATTAAATT-------------------------------------------------------
-------------------------------ATGTTCTCAAAGTCAAAGTTGTTAAAGAACACTCTGTGTCAGCATCAAG
TAGATTATGTGGTAAAACCATGTAATTATTTTTCACAAATGATAAGTTAAGCTAGATTTTATAAGTGTTTCCCGTGTTAC
ATTATATTTTACACACAAAATCCTCAATTGAATCTGGCTCGACCTATCAATTTGTGCATCTTATCTCATTTGCCAAAATA
AACTAATCCAAAACATCTCACATGCAACGCGTAGGTGAACCTTCTGAAGATTGTAAACCACATGTCCTCACTGTATGAAC
TATGAAACTTAAGGAGATGGAGCAAATGAAATACTCCCTCTGTTCACTTTTATAATACCTTGAAGACATTTCAGACAATA
TGCAAAATAGTCCATTTTGAGTTGTCTGAAACGACTTACAACAGTGAACGGAGGGAGTATAACTTTTTAAAATATGTGAA
AAATAAATGATAGTGTAACTCAACTATCAGTTTAGAGCCTCGTGGATGGGCTCCTAGCCCAGTGGCCAGCGAGCAACTCT
ATCTCCTGGCTGACACGGGTTCGAGGGTCAGCTTGGGTGTTGTTGTCTCACATTCTCCTCTTAATTTAAAAATCGTAGGG
GCTGCTCCCCCTACTGGTGTAATTTTTTTTAAGTTTAGAGCCTCGTGACCAGTAAGAATTGAATCCATTTCTTAGGTTCA
CAAGATAACAAGAACACTTATTACATTGATTTTCTTCTTTATACAATTACAAAGCTGCAACCGGTTTTGTAAAATTTGCA
TTTTTTTTAGTTCAATGACATCACATCATATAACACAATTAACTATCTACTCAATTCTATGGACCTTGGAACTTCTCAGA
TAAAGGTAAACAAGAAAAAAACAACTTCACAAGATCATCAAAGCAAGGCCTTCCAAGGAAGCTTTTGTGTTATCAAGGCT
TCAAGTCTCCAACTGGCTCAACTACCCAATTGAGATGCTCCTCACTGGGTTTGTGTATACGGTGTTCGGGCAAGGGAACT
AGGTGCAAGTCCATTTAGAATCTGATG
>chr1D_777
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--------------------------------------------------------ATATTTCTTCGTTCACACATATTC
CATGCATGCATCCATACGCTGGTCACCCACATCGTGTGTGTCCGCTTGCGTGCGCGGAAAAGCAACAGCAGAACACACCA
AAAATGCA----AGTCGAGGGCGATACGCCACGCTAAACCCAGCCAGGCCCCCTATAAAAACCATCTCAT---CAGTGAA
CAGCTCACTACACAAACCCATCGACCGATCACCACA---------CACAGCAGCAGCATGGCTACCACCAGCTGTGCCCT
CCTCGTCGCCCTCGTCGTCCTGGCCGGCCTCGCCGACCTGCAGGCCGCCGCAGCCGCCCC---------GAGGCCCGTTC
ACGCCGCGGAGCACTTCTCCATGGCGGCAATGACGGCGGAGCACCCAATGGCGGACGAGGCGGACCCGGACCTGAACGGG
ATGATGCAGTGCATGTTCGGGTGCTTCACGTCGGTGATGAGCTGCGCGTTCGGGTGCATGGGCAAGGGCCCCGACCTGCC
GCTCTGCGTCATCAGCTGCAACCAGAAGAGCATCGTCTGCATGATCCGCTGCGGCCTCACGCCCTCGCCGCCGGCTCCCA
AGCCGCCAACGCCACCCGGGCCGCCCGCACCCAAGCCGGCACCCCCCAAGCCTGCACCCGGCCCGCCGCCATACGCCGGT
CAAAACACCAAGACCTCCCCCTAGAC----GCCGACGATTGCCATGCATGCATGATGCCAGTAGTATGGTACTATACGAA
TTAACTAAAAAAGAAGCCACATATATCATGGAGG--TACCCAGATATATAAATAGGGCTCGATACATAACTTATAGCTGG
ATCCCAACACTTATATATCTAGATTTATGCCCCTCAAAAAAAG---ATATCTAGATTTATGTTATTGCAGTAGAAACAAT
GTCATATATGACCCATGGTGATTGTACTTATACTATTCATGCAATATATATGTATATATACATTGGTGTAAGCGTGCAAA
TATGTAATGATAGCTCTATTAAA---------------------------------------------------------
-----------------------------CCATGTTCTCAAAGTCAAAGTTGTTAAAGAACACTCTGTGTCAGCATCAAG
TAGATTATGTGGTAAAACCATGTA-TT-TTTTTCACAAATGATAGGTTAAGCTAGATTTTATAAGTGTTCCCCGTCTTAC
ATTGTATTTTACACACGAAATCCTCAATTGAATCTGGCTCAACCTATCAATTTGTGCATCTTATCTCTTTTGTCAAAATA
AACTAATCCAAAACATCTCACGTGCAACACGTAGGTGAACCTTCTGAAGATTGTAAACCACATGTCCT------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
----------S----------S-------------------S---S----------------------------------
------------------------------S---------------------------------SSS-----SS------
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----------------S--S----------------------------------------SSSSSSSSS-----------
-----S----------------------S---------------------------------------------------
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-------S------------------------------------------------------------------------
----------------S-S-------------------------------------------------------------
-----------------------------------------------------------------------SS-------
---------S--------------------------SS-S----------S-----------------------------
--------------------------------------------------S-----------------------------
-----S--------------------------------------------------------------------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S-----------S--------------
------------------S-----------------------------------------S-------------------
---------------------------S-----------S----------------------------------------
---------------------------------------S------------------S-----------S--------S
---------S--------S-----S-S------SSS--------------------------------------------
-----------------------------------------------------------------------S----S---
S--S-------------S----------------------------------------------------------S-S-
S----S--------------------------------------------------------------------------
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-S------------------------------S---------------S---S-------------S-----------S-
--------S-----------------------------------------------------------------------
S-------S------------------
>forward_133
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---------------------------------CGACACTCTCGTCCCATAGC---------------------------
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>reverse_1829
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--------------------------------------------------------------------GGTGATCCTCCT
CCGCAAAA------------------------------------------------------------------------
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