>input_sequence_80254
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---------------------------------------------------------------------------ATGGT
AGAAGGCGGCAGCGGCGCGGGGGCTACGTCGACCTGCCGGCGCGGCGGCGGC---GGCGGCATCGTCGGCCCGGCGGCCC
AGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGACGCCTGGTGCGCCGGCTGCGTCGCCAGGGGAGGCAGGCGCTGTGCGCG
GCCAGGCCGGCGGCGTCGTCGTCGTCTTCGTCGGCGGCCGGGGCGCTCCGGGGGTGCCAGTACGACCCGCTGAGCTACGC
GCGCAACTTCGACCAGAGCGGCTTCGGCGACCCCGACCCGGACGCGGACGCGGCCAGCCTCTACTACAGCTACACCTTCT
CGTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCACCTCGTCCTCAACCGCCGTCGCGGCCGTCGTCCCCGCGCCGAACGGC
CTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAG-----------------------------------------
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>chr6D_1_TraesCS6D01G147200
ATGTCGGGTCCTAGATAAGAATCCGTTTGCTGAATTGCCTCCACCACAAACGAGCAATCAGATTCAATCTCCACATTGTT
GCACCCCAAA-TTTGCCAACAAGTATATTTCATTTCTAATTGCCCCGAGCTCCGCTGAAT-CAACATCTTGGATATGTAG
AAGAAACCAAGTCACTTCTGCTAGAAAGTCAACCCGTT-CATCATACA-----------CAAGCTCCAAAT---------
--------------------------------CAGTCCATGAGACGGTTTTCTTCCACATATGTTCTTTCTTCT---AAG
TCGGGAGTTT-GGAGACACCGAT-CTGATGTAATTTGTAGCTAGGACGCGAATAGGCAGCGCTGTTTTCTCAGGGTTTTG
AATCACGATTCCTTTCACAAGTTGTCGTCGTTGCCATCAAAGGTACCACGCCGCCACAACAGCCAGTTCGGCCACATGTA
CTCCATCCAAAACAACAATCAAGCTTTGATAAGATATTCGCAGTGACTGAGCTTGATTTGTTCTGATCAACTGCTCTTTG
AATGGCATCTAAAAGTCCCAGCTGAGACCACACTTCTTTCACACGACGACATTTGAAGAGGCAGTGCTGCAAGTCATCGA
CACTGT-----------------------GAACAAGGTATGTATGAAAAAGAAAAAGGCCTTCTACTTCTAGGAAAAGAA
AATATCTTCTTTCCTAAGAAAAGAAAAATAAAATATCTTCTTTGCTAAGAAAAGAAAAAGAAAAGATAAGATCTTCCCTG
CCCCGATGTGGGTGCACGGGTCTCATCCTCCCCAGCTTGACACCAAAATACTCACGGAGGCTGCACTGCTCCGTCGCC--
------TCAGTTCGCAAACGG-TTTGCGCGAATGGGTTGGCGGCCACAGCTGGCCGGACCTTTATAAATCACGGTCACGG
ACACGTCTACCTACCAATAACCCACACG-----CGCGCCCGGCACAAGTCCCACAGCCACA----------------CTG
CACTGGACACACGGTCGCGCACGCGGCGTCGCGGAGAGGCGAGGAGCGAGAGGGAGAGA--CGTGGGCGGCAGCGATGGT
AGAAGGCGGCAGCGGCGCGGGGGCTACGTCGACCTGCCGGCGCGGCGGCGGC---GGCGGCATCGTCGGCCCGGCGGCCC
AGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGACGCCTGGTGCGCCGGCTGCGTCGCCAGGGGAGGCAGGCGCTGTGCGCG
GCCAGGCCGGCGGCGTCGTCGTCGTCTTCGTCGGCGGCCGGGGCGCTCCGGGGGTGCCAGTACGACCCGCTGAGCTACGC
GCGCAACTTCGACCAGAGCGGCTTCGGCGACCCCGACCCGGACGCGGACGCGGCCAGCCTCTACTACAGCTACACCTTCT
CGTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCACCTCGTCCTCAACCGCCGTCGCGGCCGTCGTCCCCGCGCCGAACGGC
CTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAGCCGTCCCGTCGCCAGTAGCTTCCCTTTCTCTCTCCTCGGGT
TC-CTTTTCCTCAACCTCTGGAATGGAAAGGCAGCAGCTTGTTTTAATTCGATTTAAGAAGAGCCTTTCCGTAGGGGAAA
GTTCGGTCGGGAGAACGACGATGCTTGTAAATTAATACTGTAGTACTGTATGTA-----TGTGAGAAGAACGCCATTGCT
CGGTCGATCGAGTTG-----TGCCATGCCATGCCATGCTCGATCGGATTCTCAAGGACCGTATTCAGATTTCTGATTCTG
AGCTGCCGAGGATAGGGTCGAGAGTACTGTAATTGCAGTGGCAGGCAGATGCCGATGGGCAGGGGGGACGTACGGGGCCG
AGAGGCGCCATGAATGCGGTGGTACTTGCCGGCGGTGACGCCACCGCCA----TGGCACTGGGTGGGAGCGGAATGGGCG
ACGGTCGGGGGTGGTGGTGGCGCAATAATTGGCCCTGGAAATGGAATTCACGGCTCCGCAGTCCCGTCCGTGATCTGTCG
CTG----TCACCACCACCGCACCGGCTGCTTCGGGGTGGTGGTGGGGGCGGAGATGGAGGAGGAGAAGATGCCTGCCAAT
CTGCCATGGCCGGCGAGACCGACCATGACATCGACGCGTAACGGCATTATGGTGCGCCCCGTCACCGTCAGGATTCCTCG
GATCTGATGCTTGCCCAGGCTGATGGGACGCGTTCCGGCCACTGGACCGAATGCATC-----------------------
CCGGTCAGGGATTCTACAGGATTCCGGTGCTGCTTTTTACTTTCACTGGGATTTCCGACCAGGCGATATGGCTGTGTGTG
TGTGTGTGTGTGTTGACAGACGCTCCTGCCTCGGTGCTTCTACCTAGTGGCTGTACTACATGAATGCAGATGATTTGTCG
GAGGGGCCGTTTGGTCTATGGGGACATCTACACCCTATATAGAAAAAGAAATTAGTAATTCAACAAAAAATAAAAAATAT
TTGAAAATATTTTTGAAATAAACTTGACCTTCTATTGTACG
>chr6A_1
ATGTAGGGTTCTAGATAAGAGTCCATTTGTTGAATTGCCTCCACCGCAAACGAGCAATTAGATTCAATCTTCACATTGTT
GCACCCCAAA-TTTGCCAACAAGTATATTCCATTTCTAATTGCCATGAGCTCCGTTGAATCAAACATCTCGGATATACGG
AAGAAACCAAGTAACTTCTGCTAAAAAGCCACCCCGTT-CATCACGCACAATAGTACCGCAACCTCCAGAT---------
--------------------------------CAGTCCATGAGACGGTTTT-TTCCACATATGTTCTTTCTTCT---GAG
TCGGGAGCTTCGGAGACATCGAT-CTGATGTAATTTGTAGCTAGGAGCGAA--AGACTGTGCTATTCTCTCAGGGTTTTG
AATCACGATTCCTTTCACAAGTTGTCGTCGTTGCCACCAAAGGTACCATGCCGCCGCAACACCCAGTTCGGCCACAGGTA
CTCCATCCGAAACAACA-CTAAGCTTTGATAAGATATTCA--------GAGCATGCTTTGTCCTCATCAGTTGCTCTTTG
A-------------------------------------------------------------------------------
-------------------------------ACAAGGTATGTAAGAAAAAGAAAAGGGCCTTCTACTTCTAAGAAAAGAA
AATATCTTCTTTCCTAAGGAAAGAAAAATAAAATATCTTCTTTGCTAAGAAAAGAAAAAGAAAAGATAAGACCTTCCCTG
CCCGATGT--GGTGCACGGGTCTCATCCTCCCCAGCTTGACACCAAAATACTCACGGAGAGTGCACTGGTCCGTGGCCGG
ACCGCCTCAGTTCGCCAACGG-TTTGCGCGAATGGGCTGGCGGCCACAGCT----GGACCTTTATAAATCACGGTCACGG
ACACGTCTACCTACCAACAACCCACACA-----CGCGCCCGGCACAAGTCCCACAGCCACAGCCACACTGCGCCGCACTG
CACTGGACACACGGCCGCGCACGCGCCGCCGCGGGGAGGCGAGGAGCGAGAGGGAGAGAGACGGGGGCAGCGGCCATGGT
GGAAGGCGGCAGCGGCGCGGGGGCTACGTCGACCTGCCGGCGCGGCGGCGGCGGAGGCGGCGTCGTCGGCCCCGCGGCAC
GGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGGCGTCTCGTCCGGCGGCTGCGGCGGCAGGGGAGGCAGGCGCTGTGCGCG
GCCAGGCCGGCGGCGGCGTCGTCGTCCTCGTCGGCGGCCGGGGCGCTCCGGGGGTGCCAGTACGACCCGCTGAGCTACGC
GCGCAACTTCGACCAGAGCGGCTTCGGCGACCCCGACCCGGACGCGGACGCGGCCAGCCTCTACTACAGCTACACCTTCT
CCTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCGCCTCGTCGGCCGCCTCCGTCGCGGCCGTCGCCCCCGCGCCGAACGGC
CTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAGCCGTCCCGGCGCCAGTAGCTTCCCTTTGTCTCTCCTCGGGT
TC-CTTTTCCTCAACCCCTGGAATGGAAAGGCAGCAGCTTGTTTTAATTGGATTAAAGAAGAGGTTTTCCGTAGGGGAAA
GTTCGGTCGGGAGAACGACGATGCTTGTACATTAATACTGTAGTACTGTATGTA-----TGCGAGAAGAACTCCATTGCT
GGGTCGATCGAGCTGTGCCATGCCATGCCATGCCATGCTCGACCGGATTCTCAAGGACCGTGTTCAGATTTCTGATTCTG
AGCTGCCGAGGATAGGGTCGAGAGTACTGTAATTGCAGTGGCAGGCAGATGCCGATGGGCAGGGGGGACGTACGGGGCCG
AGAGGCGCCATGAATGCGGCGGTACTTGCCAGCGGTGACGCCATGGCAG----TGGCACTGGGTGGGAGCGGAATGGGTG
GTGGTCGGGGGTGGCGGTGGCGCAATAATTGGCCCTGGAAATGGAATTCACGGCTCCGCAGTCCCGTCCGTGATCTGTCG
CTGTCACTCACCACCACCGCACCGGCTGCTTCGGGGTGGTGGG---------------GGAGGAGAAGATGCCTGCCAAT
CTGCCATGGCCGGCGAGACCGACCATGACACCGACGCGTAACCGCATTATGGTGCGCCCCGTCACCGTCAGGATTCCTCG
GATCTGATGCTTGCCCAGGCTGATGGGACGCGTTCCGGCCACTGGACCCAACGAATC-----------------------
CCGGTGCTG------------------------TTTTTACTTTCACTGGGATTTCCGACCAGGCGATATGGCTGTGTGTG
TGTGTGTGTGTGT-------------------------------------------------------------------
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>chr6B_5
----CGGGTCCTGGATAAGAGTCCATTTGCTGAATTGCCTCCACC----ACGAGCAATCAGATTCAATCTTCACATTGTT
GCACCCCAAATTTTGCCAGTAAGTATATTCCATTTCTAATTGCCATGAGCTCCACTGAAT-AAACATCTCGGATATGCGG
AAGAAACCAAGTCACTTATGTTAGAATGTCACCCCGTT-CATCACGAACAACAGTACCGAAAGCTCCAAAT---------
--------------------------------CAATCCATGAGACGGTTTT-TTCCACATATATTCTTTCTTCA---GAG
TCGGGAGCTTTGGAGGCATCGATCCTGATGTAATCTGTAGCTAGCATGCGAATAGACAGTGTTGTTTTCTCGGGGTTTTG
AATCATGATTCCTTTGACAAGTTATCGTCGTTGCCACCAAAGATACCACGCCGCCACAACACCCAGTTCGGCCACAGGTA
GTCCATTCGAAACAACA-TCAAACTTTGA-AAGATCTTCATAGTGACTGATCCTGGTCTGTCCTCGCCAGTTGCTCTTTG
AATGACATCTAGAAGTCCCTGCTGAGGCCACACTTCTTTCACGCGACGACATTTGAAGAGGCAGTGCTGCAAGTCATCGG
CACCCATCGAACGGCATGGGCATCCGGGCGAACAAGGTATGTATGAAAAAGAAAAAGGCCTTCTACTTCTAGGAAAAGAA
AATATCTTCTTTCCTAAGAAAAGAAAAATGAAATATCTTCTTTGCTAAGAAAAGAAAAAGAAAAGATAGAATCTTCCCTC
CCCCGATGAGAGTGCACGGGTCTCATCCTCCCCAGCTTGACACCAAAATACTCACGGAGACTGCACTGCTCCGTGGCCGG
ATCGCCTCAGTTCGCCAACGGGTTTGCGCGAATGGGTTGGCGGCCACAGCT----GGACCTTTATAAATCACGGTCACGG
ACACGTCTACCTACCAACAACCCACACACGCGCCGCGCTCGGCACAAGTCCCACAGCCACA----------------CTG
CACTGGACACACGGTCGCGCACGCGGCGCCGCGGAGAGGCGAGGACAC--------AGA--CGGGGGAGGCGGCGATGGT
AGAAGGCGGCAGCGGCGCGGGTGCTACGTCGACCTGCCGGCGCGGCGGCGGTGGAGGCGGCATCGTCGGCCCGGCGGCCC
GGCGGTGCTGCGGCGGCGGGTGCGGGCTCGGGCGTCTCGTCCGGCGGCTGCGGCGGCAGGGGAGGCAGGCGCTGTGCGCG
GCCAGGCCGGCGGCGGCGTCGTCGTCTTCGTCGGCGGCCGCGGCGCTCCGGGGCTGCCAGTACGACCCGCTGAGCTACGC
GCGCAACTTCGACCAGAGCGGCTTCGGCGACCCGGACCCGGACGCGGACGCGGCCAGCCTCTACTACAGCTACACCTTCT
CCTCCCGCTTCGTGCTCGCGCCAGGCAGCGCCACCTCGTCCTCAACCGCCGTCGCGGCCGTCGTCCCCGCGCCGAACGGT
CTCGTCGTCGCCAGCCGGCCAACCGCCGCCAGCCATTAGCCGTCCCGGCGACAGTAGCTTCCCTTTCTCTCTCCTCGGGT
TCTCTTTTCCTCAACCTCTGGAGTGGAAAGGCAGCAGCTTCATTTAGTTTGATTAAAGAAAAC-TTTTCTGTAGGGGAAA
GTTCGGTCGGGAGAA-GACGATGCTTGTAAATTAATACCGTAGTACTCTATGTACTGTATGTGAGAAGAACGCCATTGCT
GGGTCGATCGAGCTGTGCCATG-----CCATGCCATGCTCGGTCGGATTCTCGAGGACCGT-TTCAGATTTCTGATTCTG
AGCTGCCGAGGATAGGGTCGAGAGTACTATAATTGCAGC----GGCAGATGCCGATGGGCAGGGAGGACGTATAGGACCG
ATAGGCGCCATGAATGCGGTGGTACTTGCCGGCGGTGACGCCATCGCCATGGCTGGCACTGGGTGGGAACGGAATGGGCG
ACGGTCGGGGGTGGTGGCGGCGCCATTATTGGCCCTGGAAATGGAATTCACGGCTCCGCAGTCCCGTCCGTGATCTGTCG
CCG----TCACCACCACCGCACCGGCTGCTTCGGGGTGGTGGTGGGGGCGGAGTCGGAGGAGGAGAAGATGCCTGCCAAT
CTGCCATGGCCGGCGAGACCGACCATGAC-------------GGCATTATGGTGCGCCCTGTCACCCTCAGGAATCCTCG
GATCTGATGCTTACCCAGGCTGATGGGACGCATTCCGGCCACTGGACCCAATGCATCCCGGTCAGGGATTTTACAGGATT
CCGGTGCTG------------------------TTTTTACTTTCACTGGGAT----------------------------
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>chr5B_5
----CGGGTCTTAGATAAGAGTCCA-TTGTTGAATTGCTTCCACCGCAAACGAGCAATCAGATTCCACCTCCACATTGTT
GCACCCCAAA-TTTGCCAACAAGTATATTCCATTTCTAATTGACATGAGCTCTACTGAAT-CAACATCTCAGATACGTGG
AAGAAACCAAGTCGCTGCTGCTAGAAAGTCACCCCGTT-CATCACGCATGACAGCACCCCAAACTTCAGATAAAGT----
-------ATGACGCATCTACATTAACCTTGACCAGTCCATGAGACGGTTTT-TGCCACATATGTTTTTTCTTC----GAG
TCGGGAGCTTTGGAGGCATCGAT-TTGATGTAATTTGTAGCTAGGACGCGAATAGAAAGTGTTGTTTTCTCAGGATTTTG
AATCACGATTCCTTTCACAAGTTGTCGCCTTTGCCATCAAAGGTACCACGCCGCCACAACAACCAGTTTGGCCACAGGTA
ATCCATCCGAAACAGCA-TCAAGTTTTGATAAGATCTTCATAGTGATTGAGCCTAATCTGTCCTCATCAGTTGCTCTTTG
AATGGTATCTAGAAATCCCAGCTGAGACCACACTTCTTTCACATGACGACATTTAAAGAGACAGTGCTGCTAGTC-----
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>chr2A_5
----CGGGTCCTAGATAAGAGTCCATTTGCTGAATTGTCTCCACCGCAAACGAGCAATCAGATTCAATCTCCTCATTGTT
GCACCCCAAA-TTTGCCAACAAGTATATTCCATTTCTAATTGCCAAGAGCCCCGCTCAAT-CAAATCTCTG---ATATGG
AAGAAACCAAGTTGCTACAGCTAAAAAGTCACCCGG-T-CATCACACACGACATCACCGCAAGCTCCAGATAAAGTATCC
AGATAAAATGATGCATCTACATTGACCTTGACCAATCCATGAGACGGTTTT-TGCCACATATGTTCTGTCTTCTTCCGAG
TCGGGAGCTTTGGAGACATCGAT-CTGATGTAATTTGTAGTTAGGGCACGAATATATAATGTTTTTTTCTTAGGATTTTG
AATCACGATTCCTTTCACAAGTTGTCGTCGTTGCCACCAAAGGTATCATGCTGCAACAACAGCCAGTTCGGCCACAAGTA
GTCCATCTAAAACAACA-TCAAGCTTTGATAAGAT---------------------------------------------
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>chr2D_6
-----GGGTCCTAGATAAGAGTCCATTTGCTGAATTGTCTCCACCGCAAACGAGCAATCAGATTCAATCTCCACATTGCT
GCACCCCATA-TTTGCCAACAAGTATATTCCATTTCTAATTGCCAAGAGCTCCGCTGAAT-CAACATCTCGGATATGCGG
AAGAAACCAAGTCGCTACTGCTAAAAAGTCACCCTG-TTCATCACACACGACATCACCGCAAGCTCCAGATAAAGTATCC
ACAT--AATGATGCATCTACATTGACCTTGACCAATCCATGAGATGGTTTT-TGCCACATATGTTCTTTGTTCC---AAG
TCGGAAGCTTTGGAGACATCGAT-CTGATGTAATTTGTAGTTAGGACGCGAATAGATAGTGTTGTTTTCTCAGGATTTTG
AATCATGATTCCTTTCACAAGTTGTCATCGTTGCCACCAAAGGTACCATGTTGCCACAATAGCCAGTTTGGCCACAGGTA
GTCCATCTAAAAGAGCA-TCAAGCTGTGATAAGATCTCCATAGTGACTGAGCCCGATCTGTCCTCATCAGTTGCTCTTTG
AATGGCATCCAGAAGTCCTAGCTGAGACCACACTTCTTTCACACGACGACATTTGAAGAGATAGTGTTGCAAGTC-----
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>SNPs
--------------------S---S--------------------S----------------------------------
-----------------------------S--------------SS--------------------------------S-
-------------------------------S------------S-----------------------------------
---------------------------------------------------S----------------------------
-------S----------S------------------------------------S---S--------------------
----------------------------------------------------------------------------S---
-----------------S---------------------SS-----------S--------S--S----SS---------
-----------S-------------------------------------------------------------------S
---SSS--------------------------------------------------------------------------
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--------S--------------------------------------------------S--------------S-----
---------------S-----------------------------------SSSS-------------------------
-----------------S---------S----------------------------------------------------
----------------------------S----------------------------------S-------S--------
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S------------------------------S--S--S--S--S--------S--S------------------------
---------------S----------------------------------------------------------------
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-S------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------------------------------S----S--------SS---------------
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S-----------S------------------------------------------------S------------------
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-------------------------------------------S------------------------------------
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-----------------------------------------------------SS-------------------------
------------------------------S-------------------------------------------------
------------------------------------------------S-------------------------------
-----SSS-SSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_644
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----------------------------------------------------------------TGCTGCAAGTCATCGA
CACT----------------------------------------------------------------------------
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>reverse_2432
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-------------------------------CGGTGCTTCTACCTAGTGGC-----------------------------
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