>input_sequence_80226
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-------------------------------------------ATGCTGCTGGGCTCCTCCTTCGCGTCGCCGTTCACCC
AGCTCCACCTCTCGGCGAGCCCCAATGCGGGGGCGGGGGCGCGGCCGGCGGCGGCGGGGATGGTGCTGCGGATCGAGGCG
GCGAAGCAGCTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAGGCAGCA
CCCAAAGTACCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACG
TCGTCGAGCTCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGC
CGCAAGGCCCAGCTCCTCCCGCCCCTCGAGTCTCAGTCCGGCCAAGAATCCGCCGCCGCC-GCCGCCGAGGAGACC---G
CCGCCTAG------------------------------------------------------------------------
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-----------------------------------
>chr2B_1_TraesCS2B01G623400
TGCCTGCAGGCTGGACATGGTTACCATCACCTATCAAGGTGAGATGCTTCTATGAAGCTAAAGGAACCCTGGAAGTTGTC
GTCCAGACCTACTCCGAATCTGATGATAGCACTGCACAAGGTCGTGTATGCTTCACGCCCAAACATTGCAACATAAGTCA
GGAACTCGATATAGATGTGCCATCGGTGATGGCGAGGTAAAAATTGTCGTTGCTGGCCCCTTCTTGTTATGGACAAGCAC
GATACCACGAGACAAGGAGGTTTGTTTGAAGTATTAGTGCCTTATGAGATGGACTAGGAAAAGAGAGGCTAACCTTCATC
AAACTTGTACTCAGTTTAATTGGTTTTTCGAAGGTTCGCCGGCTTTCCTATATTATATAGTGTTTTTTGTACTACCTTCT
CAGTTGATGAATAGATTGTTTTCTCCTAATAATAATAATAAGATGTCGACATAGCTCATGCGTCAAGTCTGACTTATGTT
CTGGATATATAGGGTGTCTTTGGTTTCTTAAGAGAGGGTTCGACCAAAAGTCACATAGCTTGCCTAGTATTCTCTGTTTT
TCTTTCTTGTGTTTTAGTTTGATGACTCTCTTAGCCATCTTTCTTTGGTACGAATTACTTTTGAAAATATCAATAAAGTC
CACAACAGGGTCCTCTGTTGCCCTAAAAGAAATGGGTTAACCTCTCAAAATAATACTCTCTTGTAGCACAAATATTTTCC
TCTTTTTAGCTGATTTTTTTCCCAGTTAAGAGATTGCATTGCAAGAAAATTACCGGTTTGACCTCTCAAGAAAATTACTC
TTGTTTAGAACTGTCTTCTCAATTCTGTCTTGTGAAAA-GCCACGTGTACTCGAGGCCCAAATATAAGTAGTCCGGCGGA
GCAGAGCAGGAGGCCTGCT-CCTGGAAAGAAACCCCGAGCAAAAAA-ACCTTATCTTTATCCTATCCCATTCCCAATCCC
ACCTCCACCTTCGAGCGAGAGCGAGAGAAGGAAGACGAAGAAGATGCTGCTGGGCTCCTCCTTCGCGTCGCCGTTCACCC
AGCTCCACCTCTCGGCGAGCCCCAATGCGGGGGCGGGGGCGCGGCCGGCGGCGGCGGGGATGGTGCTGCGGATCGAGGCG
GCGAAGCAGCTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAGGCAGCA
CCCAAAGTACCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACG
TCGTCGAGCTCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGC
CGCAAGGCCCAGCTCCTCCCGCCCCTCGAGTCTCAGTCCGGCCAAGAATCCGCCGCCGCC-GCCGCCGAGGAGACC---G
CCGCCTAGTGA-----TGCTTCCTGCTTTTGCTTTCCGCCGTTCTCTTCTCTGTTAATTAATCGTCGTCGTTCCCTTTGC
TGCTGCTCCCTGTA-----------------GACTGAACTCCAATACCATTATGTACCACCTGGCTCTGAATTTCGTTTC
TTTTTC------------CAAGAATTAATCGTG-------TACCTAATTGCA----TTTTTGGAGTATT-ATCTATTTTC
GA--AATCCCTGGCACAGAGAGTAATTG---TAAA------CAACCAACCAACCAAACAATCGGTTTCACAT---TTTGC
CATATACGAATCCAATG-------------------------TCTGCTACTCCAATCTGCCTTTCTTTTATGTCAGACTT
TCCTGTGAAGTGTGTGTGTTAGAGTTGAGATATCTATAAACTTGACAAATCAACAACATTTTTTATGTCAGACTTTCCTA
TGAAACGGGTGCAAGATTTGCTTGCATTGCAGTAGTACATCCTTCCTACTAGTAATCTATGGAGACATTTTCTTCAGATT
CAGTCTAATGCATATACTCCCTCCATTCCGAATTACTTGTCTCACGTATAATAGTTCTAGATACATCCATTTCAGCGACG
AGTAATTTGGAACGGAGGGAGTACATCCTAGGCAATTCAGTACCAGCACAAGGAAGCTCCAATGCCAGACTGACATGAAC
TTGCTTCAGTTTGTCTCAAGTGTGGTTGCTG-------------------------------------------------
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--------TCTGGCTCACATCTGGTGCCTC-AACCCAAACATCTTGGATGTCGCCGCTCATGAGCACTCCGGGGG----A
CATACATGAACTTGTTTGTCTGAACTCTGAACTAAGTCCATGGACATCCATGACAGAAACATCATTCTATCTGAACGATG
GTAGGAGCCCCTGCTTTGTTCCTTCTGGCCTCCTGCCTTGCCTTTTTCTTTTCTTTTCCTTATAGATTTAGTGCATACAG
TTCCAAATAGCACATTCCCAAATCCCAATCTCTCTTCAGAAAATACAATGATTCAGTTAACTAATTGTCGTTCCCTTTGC
TATTACTGTTCTTGCTCCCCTGTAGACTGAACTAC
>chr2A_823
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----------------------TTCTGTCTTGTACAAGGGCCATGTGTACTTGAGGCCCAAATATAAGTAGAGTGGAGAG
CTAGCTATATAGGGGCCTGGCCTGGGAAGAAACCCAGAACAAAAAAGACCTTATCTTTATCCTATCCCATCCCCAATCCC
ACCTCC--------GCGAGCGAGAGAGAAGGAAGACGAAGAAGATGCTGCTGGGCTCCTCCTTCGCGTCGCCGTTCACCC
AGCTCCACCTCTCGCCGAGCCCCAATGCGGGGGCGGGGGCGCGGCCGGCGGCGG---GGCTGGCGCTGAGGATCGAGGCG
GCGAAGCAGCTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAAGCAGCA
CCCAAAGTACCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACT
TCGTGGAGCTCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGC
CGCAAGGCCCAGCTCCTCCCGCCCCTCGAGTCCCAGTCCGGCGACGACTCCGCGGCCGCC-GCCGCCGAAGAGACC---A
CCGCCTAGTGA-----TGCTTCTTGCTTTTGCTTTCCCCCATTATCTTCTCTGTTAATTAATCGTCGTCGTTCCCTTTGC
TGCTGCTGCTGTTCTTGCTCCCCTGTAGACTGAACT--------------------------------------------
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>chr2D_841
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-----------------------------------------CACGTGTACCGGAGGCGCAAATATAAGTAGAGTGGAGAG
CTAGCAGCTA---GGCCAGGCCTGGAAAGAAACCCCGAGCAAAAAAAACCTTATCTTTATCCTATCCCATCCCCAATCCC
ACCTCC--------GCGAGCGAGG--GAAGGAAGACGAAGAAGATGCTGCTGGGCTCCTCCTTCGCGTCCCCGTTCACCC
AGCTCCACCTCTCGCCGGGCCCCAATGCGGGGTCGACGGCGCGGCCGGCGGCGG---GGCTGGTGCTGAGGATCGAGGCG
GCGAAGCAGCTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAAGCAGCA
CCCCAAGTACCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACG
TCGTCGAGCTCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGC
CGCAAGGCCCAGCTCCTCCCCCCGCTCGAGTCCCAGTCCGGCGACGACTCCGCCGCCGCC-G------AAGAGACCGCTG
CTGCCTAGTGA-----TGCTTCTTGCTTTTG-TTTCCCCCATTCTCTTCTCTGTTAATTAATCGTCGT---TCCCTTTGC
TATTGCTGTTGTTCTTGCTCCCCTGTAGACTGAACTTT----GATACTACTCGGTACCACTTGGCTCTGAAATCTGTACT
TTC-TCTTCTTCCTGCAGCAAGAATTAATCTTGGTACTACTACTTGATTGCA----TTCTTGGAGTATTTATGTATTGCC
GT--AATCTCTAGCATGGTCATGATGGTTGATGAA------CAACCAAACAAACGAACAAAATATTACACAC---TTGCT
AGTGTTACAGAGTAGGTACGTACGTACTTATCTGAAGAATGCTCTGTCGCTCCAGTG------TCTTTTATGTCAGACTT
TTCTGGGATATTATGAAATTTCAGAGTTGAATCAGAGTTTAAATGGGGCGAGA---------------------------
-----------------TTGTTTGCACTGCAGCAGTACATCCGTCCTACGGGTAATTTGCGGGGACAGTTTCTTGGGATT
CAGTCCAATGCGTG------------------------------------------------------------------
-----------------------CATCCTAGGCAGTTCAGTACCAGCACAAGGAAGCTCCAATGC----CTGACATGAAC
TTGCCTCAGTTTGTTTCAAGTGCAGTTGCTCTCTAGCTCGCATCTGATGGCTCATCTCAAACATCCTGGATGCCGCAGCT
CATGAGCATTCTGGGACACAATCTTGCATGAACTTGTTTGTCTGAACTCTCACTGATGATGGTGAACAACCAAACAAATG
TTTAGTTCTGCATGAGAATTAATCTTGTACCTGATTGCATCCTTGGAGTATTATCATTTTCATAAGAGATCCCTAGCACA
CTGATGATGGTGAACAACCAAACAAAATAAAAATCGAGTGCGCTTTTGCTAGTAATGTAATGTGGAGACATTTCTTCGTA
TTCAGTCCAATACATATCCTACTAGTACCAGCAGAAGCTACAGTAGTAGACTAATGTGAACTTGCTGTTTGTCTAAATTG
AGTTGCTCTA--GCTCGCATCTGATGCCTCCAGCTCAAACATCTTGGATGGCGCAGCTCATGAGCATTCCGGGGGACATA
CATACATGAACTTGTTTGTCTCAACTCTGAAGTCAGTCCATGGACATCCATGACAGAAACAGCATAGTATCTGAACGATG
GTAGGAGCCCCTGCTTTGTTCCTTCTGGCCTCCTGCCTTG----------------------------------------
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>chr2D_1300
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----------------------CCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCC-GTCCCGCCCCGCAACACCCGC
CGCAAGGCCCAGCTCCTGCCCACGCTCCAGTCCCGGTCCGCCGCCGACTCCGCCGCCGCCCGCCGCCGAGGAGGTC---G
CCGCCTAGTGACGATGTGCTGCTTGCTTTTGCTTTTCCCCCGTTG----TCTGTTAATTAATCGTCGT---TCCCTTTGC
CGCTGCTGCTGTTCTTGATCCCCTATAGACTGAATGAACTCCGATATTATTCAGTACCACTTGGCTCTGAAATTTGTACC
TTGTTCTTCTTCTTGCAGCAAGAATTAATCTTG-------TACTGGTTGATTACATTTTTTGGAGTATT-ATTACTGTAG
TTATAATCCCTGTCACAATGAGTAACGATGAACAACCAAAGCAAGCAAACAAACAAACAACCGATTGCAACAGGTTTGCT
AGTGCTGTAAGAGTGTCTGAAC--------TCTGAAGCATGTTCTGTTACTCAAATGTTTGTGT----------------
-------------------------------TCAGAGTTTGAATGGGGCAAGA---------------------------
-----------------TTGCCAGCATTGCAGCAGTACATCCTTCCTACTAGTAATCCATGGAGGCATTTTCTTGGGATT
CAGTCTAATGCATA------------------------------------------------------------------
-----------------------CATCCTAGT------AGTACCAGCACAAGGAAGCTCCAATGCAAGACTGACATGAAC
TTGCTTC--TTTGTTTCATGTGCAGTTGCTG-------------------------------------------------
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--------TA--GCTCGCATCTTATGCCTCAAACCCAAATATTTTGGATGACACAGCTGATGAGCAGTCTGT--G----A
CATACATGAACTTGTTTGTCTGAACTCTGAAGTCAGTCCATGAACATCCATGACAGAAACAGCATTCTATCTGAACGATG
CTAGGAGCTCCTGCTTTGTTCCTCCTGGTCTCCTGCCTT-----------------------------------------
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-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-----------SS--S-------------S-------------------SSS--S-SS
SS--SSSSSS---SSSSSS---------------------------------------------------S---------
------SSSSSSSS-----S-S----------------------------------------------------------
--------------S---------------------------------------SSS--S--------S-----------
-------------------------------------------------------------------------S------
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--------------------------------S---------S-S--S--------------------------------
----------------------S--------------S--S---------------------------------------
-------S-SSS-S-------------------S--------S----S---SS-------S----------S--S--SS-
--S---------------------------S------------S-S--------------------------S-----S-
-S----------------S------SSS----S---------------S---S-------S--S--S----S-----SSS
SS-S-SSS--SSS-S-S-----------------------------S---------S-SSS-S-----------------
-S---S--SS-SSSSSSS--SS--SSSS--SSSSS-SSSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------S-----------------------------------------SS----
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----------S------------------------------S--------------
--------------S-------SS--------------------------------------------------------
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---------SSS----S------S--------------------------S---S-----------S-------------
-------------------------------S-S---------------------------S------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_148
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------------------------------------------------TGCTTCACGCCCAAACATTG------------
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>reverse_1679
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------------------------------------------------------------------------------TC
GAAATCCCTGGCACAGAG--------------------------------------------------------------
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-----------------------------------
