>input_sequence_80224
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----------------------------------------------------------------------ATGCCTCACC
ACCACGGCGCACTCCCCGACGAGGAGGCCCCGTCGCCGCGGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCCGCC
GCATCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTCGAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGT
GGGCACGACGGCGAAGGCGAGGGGCGTGTTCCACGTGGACCCGGCGGTGCTGGAGGCCGAGCCGGTGCGAAGGTTGGTGG
CCGCGGCGGGGCGGCGGACCGCGGGTGGCGCGGTGGCGGTGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTG
GCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCCGAGATCGTCGAGTTCTACTCGGAGGAGGAGGACGAGGGCCAGCA
CAAA------GGCCACGGGATCAAGCTCAAGCGCTAG-------------------------------------------
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>chr2B_1_TraesCS2B01G184200
CCGCAAACCCTAACTCAACATCTTGAGAGACTAGCATGAATCTACGCCAATTGAGCCATCTACATGACCACAACCGACAA
TGTTGAGATGAGGAGACTCGAGAAAACGTTATTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGATCG
GGGCCTCCCTGCACTCCATTCGAGTCAATGGAGGAGGGAAATGACGACTCACAAACAGAGGA---GGTGTGGCGGCGCAG
TGTGCCATG-AAAATCTCGATGCATTTTAATAATGTGAAATG---------AGATAAAAAAATATTTGCATCGAAGTAAG
GCAGTAGAGCGTATATATGAAGGGATTATGACACCAAGCACGTTTCTAGGT---CGATCCTATCAGTTTACGAGCAACAA
AAACAACGACTCCATGTCGATCGAGAGAGGGAAAATGAAAGGAAAACCAAAAGTAAACGCAAAAGCCCAGCTTTCGTGAT
CCGGATCCGTCCCGAAGAAACCCCCC-----GGTGGTAACTCGACCGTTAGTTCCAAACCCCCCGTCCAACATAAAAGGA
CTTCCAGCACGCAACGCAACGCCCCCGATCGCTTCGCTCGCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCG
CCAGGTTACCTTCGGCTTGGCCAGTTCCTCCC---------GCAGGCCAAGAGCAAGAAACCCCGCAGCAATGCCTCACC
ACCACGGCGCACTCCCCGACGAGGAGGCCCCGTCGCCGCGGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCCGCC
GCATCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTCGAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGT
GGGCACGACGGCGAAGGCGAGGGGCGTGTTCCACGTGGACCCGGCGGTGCTGGAGGCCGAGCCGGTGCGAAGGTTGGTGG
CCGCGGCGGGGCGGCGGACCGCGGGTGGCGCGGTGGCGGTGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTG
GCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCCGAGATCGTCGAGTTCTACTCGGAGGAGGAGGACGAGGGCCAGCA
CAAA------GGCCACGGGATCAAGCTCAAGCGCTAGTT----AAGCTTCTTCAAGC---TAAAATCGATTCGTCT---A
GCGATGATTCTCATCGTATTACGGACGAACGTGTACACCATAGCATGTACTACTACTCCGTGTAGTAATTCGATCATCCA
CTAGTACGTACACTAATTAAGCTGCTAGCCAGGGATGC-------------ATGGTCCACACATGTGTC-----------
---TGTGGATCGATTCAACTGGATCATGCAGGTTCATAGCGCGAAAGAGCGTGGAACCTGGTTAATTTCTTTATCATGTA
AGCTTATTATTAAGGTTATAAAT--ATGTGATGATGGAAGAAACATTTGCTTACAACAAACACATGGTGGGAGGGTCACT
TGGGTGGCATGGCATGCCCT---GCAGATTCTCTTGCGAGCCTGCTACTTTTGGCCGTCGCGTAG----GTAGAACTGCA
ACACCCGCCGTGGCGACGGATTTCCGAGCATGACTCTTCGTGA--AAAAAGAGTCGATGGACCGGACGTGGCAACTACCC
TGAGGCGTGACCTGAGCTAGTCCATC--------GTGGATGGTCTCAGTGTCAATGCGAAGTAGTGT------GGCAGGC
AGGAGGCCACATAGATGATGGACAGACCGTGCCGGCCGGTCAGCCGGAGCACCCCAGGTGCCAGGGTGTCCCGCTCCGAC
CAGCACGACGCTCCGGCGCCGGTAGGCTTCCCGGCCGGCG--GGCGGGCCAGGTGGGTGCTGCTGCAGCTAGCCGACG--
--CGCGCGCGGGGGCAACTTGTTGGTGGGTCGATGTCGTCGTCGAGGCGT--ACCTGTGATGGATTGGATCAGCTGCCTA
GGCCCC-----AACCAAATCAAACAGAATGCAGGCGATGTACTTAA-------AGCGACACGAGACGT---GACAGCCGC
CGGACATGCGACGAGGTCGCTGC-----TGCCTGAATATGTTAAGCCTG--------CCTGCGTGCGTGCTTGATCTTCC
ACGGAACGTGCATTACATATACAGCAGGCCTCGTCGCCATCCCTTCGTCTCTACGG-ATCAGCCACGGCTATATACAGCT
TACTTACTTACCCAGC
>chr2D_5
----AAACCCTAACTCAACGACCAGAGAGACTAACATGAATCTACGCCAATTGAGCCATCTACACGACCGCAACCGACAC
TGTTGAGATGAGGAGACTCAAGAAAACATTATTGACCAGATCGGCACCGTCGCCACCAACCTACTAAAAACTCCAAAGCG
AAGGGAGGGGGAGAACTCCATTCAGTAGG---------------------------------------------------
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-----------------------------------------------------------------------------TCG
GGGCCTCCCTGCACTCCATTCAAGTCAATGAAGGAGG-----GATGACCTACAAACGGATGA---GGTGTGGCGGCGCAG
TGTGCCCAGAAAAATCTCAATGCGTTTTAATAATGTAAAATGTGTGAAATGAGATAAAAAAATATTTGCGTCGAAGTAAG
GCAGTAGAGCGTATATATGAATGGATTATGACATCAAGCAGGTTTCTAGGTGGCCGATCCTATCAGTTTATGAGCAACAA
AAACAACGACCCCATGTCGATCGAGAGAGGGAAAACGAAAGGAAAACCAAAAGTAAACGCAAAAGCCAC-CTTCCCTGAT
CCG-ATCCATTCCGGCACAACCCCCCACCCGGGTGGTAACTCGACCGTTAGTTCCAAACCCTCCGTCCAACATAAAAGGA
CTTCCACCACGCAACGCAACGCCCCCGATCGCTTCGCTCTCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCA
CCAGCTTACCTCCGGGTTGCCCAGTTCCAGTTCCAGTTTCAGCAGGCCAAGAGCAAGAAACCCGGCAACAATGCCTCACC
ACCACGGCGCGCTCCCCGACGAGGAGGCCCCGTCGCCACGGCCCTCCGCGGCCGGCTGCTACACCTTCCTCCGCTCGGCC
GCCTCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTCGAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGT
CGGCACGACGGGGAAGGCGAGGAGCGTGTTCCACGTGGACCCGGCGGTGCTGGAGGCCGAGCCGGTGCGCAGGTTGGTGG
CCGCGGCGGGAAGGCGCACCGCGGGCGGCGCGGTGGCGGTGACCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTG
GCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCGGAGATCGTCGAGTTCTACTCGGAGGAGGAGGACGACGAGGAGCA
CCACGACGACGGCCACGGGTTCAAGCTCAAGCGCTAGTT----AAGCCTCTTCA-AGCTATAAATTCGATTCATCT---A
ATGATGATTCTCATCGTATTACGCACGTACGTGTACACCATAGCATGTACTACTACTCCGTGCAGTAATCCGATCATCCT
CTAGTACGTACACTAATTAAGCT-------------GC-------------ATGATCCACGCATGTGTC-----------
---CGTGGATCGATTCAACTGG---ATGCAGGTTCATAGCGCGAAAGAGCGTGGAACCTGGTTGATTACT---TTATGTA
CGCTTATTATTGG-GTTAATAAATAATGTGATGATGGAAGAAACATTTGTTTGCAACAAACACATGATGGA-----CACT
TGATGTCTGGCATCCA--CT---GCAGATTCTCTTGCGAGCCTGCTGCTTTTGGCCGTCGCCTAGGTGCGTAGAACTGCA
ACACCCGCCGTGGCGACGGATTTCCGAGCACGACGACTCTTGGTGAAAAAGAGTCGATGGACCGGACGTGGCAACTACCC
TGAGCGG-----------------TC--------GTGGATGGCCTCAGTGTCAATGATCAGTAGTGTGGCAGGGGCAGGC
AGGAGGCCACATGGATGATGGGCAGACGGTGTCGGCCGGCCAGCCGGAGCATCCCAAGTGCCAAGGTGTGCCTCCA--AC
CAGCACGACGCTCCGTCGCCGGTAGGCTCCCCGGCCGGCGGCGGCGGGCCAGGTAGGTGCTGCTGCAGCGCTAGCTAGCC
GACGTGCGGGGGCGAAAATTGTTGCTCCCGGGTCGATGTCGTCGAGGCGT--ATCTGTGATGGATTGGATCGGTTGCCTA
GGCCCC-----AATCAAATCAAACAGAATGCAGGCGATGTACTTAAGGCTTAAAGCGACACGAGACGTGACGACAGCCGC
CGGATATGCGACGAGGTCGCTGCCTGA--------ATATGTTAAGCCTG--------CC----TGCGTGCATGATCTTCC
ACGGAAGGTGCATTACATATGCAGCAGGCCTCGTCGCCATCCCTTCGTCTCTACGGGATCAGCTACGGCTATATACAGCT
TACTTACTTACCCAGC
>chr2A_82
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-GTTGAGATGAGGAGACTCGAGAAAACGTTATTGACCAGATCAACACCATCGCCACCAACCTACTAAAAGCCACAAGC--
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--------------------------------------------------------------------------AGATCG
GGGCCTCCCTGCACTCCATTCAAGTCAATGGAGGAGGGAAATGACGACCTACAAACGGAGGAGGGGGTGTGGCGGCGCAG
TGTGCGCAT-AAAATCTCAATGCATTTTAATAATGTAAAATGTGTGAAATGAGATAAAAAAATATTTGCGTCGAAGTAAG
GCAGTAGAGCGTATATATGAAGGGATTATGACACCAAGCAGGTTTCTAGGTGGCCGATCCTATCAGTTTATGAGCAACAA
AAACAACGACTCCATGTCGATCGAGAGAGAGAAAACGAAAGGAAAACCAAAAGTAAACGCAAAAGCCAC-CTTCCGTGAT
CCGGATCCATTCCGGCAGAACCCCCCGCCCGGGTGGTAACTCGACCGTTAGTTCCAAACCCTCCGTCCAACATAAAAGGA
CTTC-ACCACGCAACGCAAGGCCGCCGATCGCTTCGCTCGCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCG
CCAGGTTACCTCCGGTCTGGCCAGTTCCTCCC---------GTAGGCCAATAGCAAGAAACCCCGCAACAATGCCTCACC
ACCACGGCGCGCTCCCCGACGAGGAGGCCCCGTCGCCGCGGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCGGCC
GCCTCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTCGAGTCGGCGTCCGTCG------ACGTGGTGAGGGTGGAGGT
GGGCACGACGGCAAAGGCGAGGAGCGTGTTCCACGTGGACCCGGCAGTACTGGAGGCCGAGCCAGTGCGCCGGCTGCTGG
CCGCGGCTGGGCGCCGGACCGCTGGCGGCGCGGTGGCGGTGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTG
GCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCGGAGATCGTGGAGTTCTACTCGGAGGAGGAGGAGGACGAGGAGCA
CCACGACGACGGCCACGGGTTCAAGCTCAAGCGCTAGTTCATTAAGCTTCTCCAAAGCTATGAACTCGATCCGTTTACCA
GCGATGATCCTCATCGTATTACGCACGTACGCGTACACCATAGCATGTACTACTACCCCGTGTAGTAATTCGATCGTCCA
CTAGTACGTGCACTAATTAAGCT-------------GCTAGCCAGGGATGCATGATCCACATATGTGTCTTTGACTCTGT
GTCTGTGGATCGATTCAACTGG---ATGCAGGTTCATAGCGCGGAAGAGCGTGGAACCTGGTTAATTACT---TTATGTA
AGCTTATTACTGAAGTTAAATAATAATCTGATGATGGAGGAAACATTTCTTTAGAACACACACAGGATGAA-----CACT
TGGGTGGTGCTATGTTACCGGCCGCAGATTCTCTTGCGAGCCAACTACTTTTGGCTC-----------------------
------------GCGACGGATTTCTGAGCACGATCGACTCGCCGTGGC--GAGTTGTTCGACCGGACGTGGCAGCTACCC
TGAGGCGTAACCTGCGTAGCTGGTCATCGGTGCTGTGGACGGTCTCAATGTCAATGATCAA---TGT------GGCAGGC
AGGAGGCCACATGGATGATGGGCAGACCGTGTCGGCCGGCCAGCCGGAGCACCCCAAATGCCAAGGTGCCCCGCCCACT-
-AGCACGGCGCTCCGTCGCCGGTAGTCTCCCCGGCCGGCCG--------------------------GCTAGCCGACG--
--CGCGCGCGGGGGCAACTTGTTGGG---GGGTCGATGTCGTCGAGGCGTGTATCAGTGATGGATTGGATCAGCTGCCTA
GGGCCCAATCAAATCAAATCAAACAGAATGCAGGCGATGTACTTAA-------AGCGAGACGAGATGT---GACAGCCGC
CGGACATGCGACGAGGTCGCTGCCTGATTGCCTGAATATGTCAAGCCTCAAGCCTGCCC----TGCGTGCATGATCTTCC
ACGGAACGTGCATTACATATGCAGCAGGCCTCGTCGCCATCCCTTCGCCTCTACGG-ATCAGCCACGGCTATATACAGCT
TACTTAC---------
>SNPs
SSSS---------------SS-SS---------S------------------------------S----S---------S
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
---------------------S--------------------------SS------S-----------------------
------SS----------S-----------------S--------------------------------S----------
----------------------------------------S-----------------------------S---------
-----------------------------------S-------------------------------SSS---S------
--------S-S---SSSS-------------------------------------------S------------------
------S-------------------------------------------------------------------------
-----------S---S---------------------------------------------------S------------
----------S-----------------------------------------------------------------S---
--S-----------------------------------------------------------------------------
----------------------S----------------------------------------------S----------
-------------------------S------------------------------------------------------
-----------------------------------S-----------------------------------S-SSS----
-S-S---------------S-----------------------------------SS-------S---------------
-----------------------S---S----------------------------------------------------
-----------------------SSSSSSSSSSSSS------------------S-------------------------
----------------------SSS------------------------------------------S--SSS-S-----
-----------S-S----S---S--------------------------S----------------S---SSSSSS----
-------SSSSSSS-SS--------------------------------------------S------------------
------------------------------S---SSS--S--S-------------------------------------
--------S-----S-SSSS-SSS--------------------------------SSS---------------------
------------S--------S---------S-------S----------------S------S----------S-SS--
---------------S------------S-------------------------S-------------------------
--------------------------SSSSS-SS-SS----------------S--------------------------
-------------S------------------------------------------------------------------
-----------------------------------------------------------SSSS-------S---------
--------------------S-----------------------------------------------------------
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>forward_811
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-----------------------------------------------------------------------TTTCGTGAT
CCGGATCCGTC---------------------------------------------------------------------
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>reverse_2463
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--------------------------------------------------------------GTGCGTGCTTGATCTTCC
AC------------------------------------------------------------------------------
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