>input_sequence_80219
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------------ATGTTCTTGAGCGCAAGAAATGAGTCTTCCGAGTCGGAGGACATCCAAGAACTGATCAACAGTGGCCT
CAAGTGCAACGCATCCACGCCAGCCGACGACATGGAGAGCGGCAGAGGCGGGGCACGAGCCGCCGGAAGCACGTCGTCGT
CATCGCCCCTGCCCATGGTTCTGCCGTCCGAGCAGAAAGCACGGTACAGCACGGAGGAGGATCCCAGTCGTTGCAGCTGC
AGCGATAGCTTCTTCGGCAAGTACTTTTCATTCCTCCTGCTCATGTTCGTCACCGCGTCGCTGGTGATCCTCCCGCTCGT
CCTGCCACCGCTGCCTCCGCCTCCGTCGATGCTGATGCTGGTGCCAGTGGCAATGCTGGTGATGCTCCTGGTGCTGGCGT
TCATGCCGACGTCAGGCGGCCGCAGTGCGACGGGCCCGACTGCCTACCTGTAG---------------------------
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>chr2A_1_TraesCS2A01G312000
GCCTCCGGCTGGATGCACTGCATCCAGCCCTCCCTTTCCCCGCCTTCGTTCTTTTTCTTCCTGCTCTCATCTGCCTGTCT
GCATCTCCCAGTCCATGAACCAGCGATCGTAGAAGTCCCGGTCGGTGCTGGAGCACTGCCGAT-GTGCATACCAAGCTTG
ATGCCCAGGAAAAGATGCTAGCTGATGTGCCATCGGTTTCACCAGGTAGACATACACATGCTTCGATTTTTACGTTGACA
TCTGCCTA-----TGCATGTGATGGTATATCTATTTTTGTCGGTGTGTACGTACCTTGCTTACATACATACACATGTGCG
CGAAAGCTCGT-------------------AATCAGTAATTGCATGCTTGGATTGTACTACTCGGGGACTCACGGATGAA
TTAGTAATGAG-----TATATATTTGATTGCTATTTTTGTCCTA-CCTATATAGTTAGGGATTCTTTCCCAGATACTAGA
TGTA---ATTAGTAATGGTTGTGTTAGTT---GGGAACTGGTCTTTGGGGTAATCATTTCGCCCTGTTTACTCGTAGGAA
AATTTAGGGGCTGGCCGGGTCCCTTTTCTGAAAGAACAAGGAATGCCATTTTGTCTACTTTATGATGTTGTCCTCCCTTT
TTCTATGGCTTTACAGAGTTTTCTTCTTGAAATGT---AGTAAAACGGAACCTCTAGCTAGGTATACACGTAAAGCTTAC
GCAAGGAAAAGACTGGTTACTGAGTACTCCCTCTGTAAACTAATATAAAAGTGTTTAGATAACTAAAATAGTGATCTAAA
TGCTCTTATATTAGTTTACAGAGGGAGTAGCTTGATTGCTTCACATGCTGATAAGATATCCTTTTTCGCAACAATCCACA
GGATTTGTAGATTGCCAGATCTGATCTGATTCAGCG------AGAATTCTGAGCTACCAAAGCTGCTTCGACTCAAAGCT
CTACCACTGCCCTATCTTGCACTTTAAGAAGAC----TCGATCGTCACGGAAAGAGCAGACAGAGGTATCAAA--TTCCA
TGCTAGCTCCTCATGTTCTTGAGCGCAAGAAATGAGTCTTCCGAGTCGGAGGACATCCAAGAACTGATCAACAGTGGCCT
CAAGTGCAACGCATCCACGCCAGCCGACGACATGGAGAGCGGCAGAGGCGGGGCACGAGCCGCCGGAAGCACGTCGTCGT
CATCGCCCCTGCCCATGGTTCTGCCGTCCGAGCAGAAAGCACGGTACAGCACGGAGGAGGATCCCAGTCGTTGCAGCTGC
AGCGATAGCTTCTTCGGCAAGTACTTTTCATTCCTCCTGCTCATGTTCGTCACCGCGTCGCTGGTGATCCTCCCGCTCGT
CCTGCCACCGCTGCCTCCGCCTCCGTCGATGCTGATGCTGGTGCCAGTGGCAATGCTGGTGATGCTCCTGGTGCTGGCGT
TCATGCCGACGTCAGGCGGCCGCAGTGCGACGGGCCCGACTGCCTACCTGTAGATAACTAGTACGTCCTTTTCTTGTTTT
TTCTTTTGGATTTGGTGATAGGGTAGTCATGGAATCAAGTTT-ATGCCCATCAGTTGAAGCCTAGAAGGTACCTGCTGCT
TTTCCCCCTATACTAAATGAGTATTTATCATGGGATTTGTCCAGCTAAATGAGGCCTTTGGTCAGAACAACGCCGTGACT
AATTTGCGCCTTCTTTATTAACTATGCTTTGCCATATTAGCACGAAACATTGTAGTACAAGGAGATGAATTTACGTATTT
T-------------ACCATGATAATTGATGTTGTCATTTTCAAAAGCCATTTAATTTCTTGAATACACAGGGCTCACTAT
GGTTCGAGGCTTCCAGCACCTGATTGTGAAATTTTTATTATTTTTTAATATCAATAAGCCTTCGTTATTCTCACTTGTTT
CTTGTGATACCAGGCAATAGCTTTCATGTATGTTTACAGCTGCTACATAAAACATGCACCCACTTGATAACATGCA----
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---------------------------------------------------------------TCATTTGAAGATTTCAA
CATGCCACTGATCATGATTTTCTTGCATATCATCTAGGAATTTCTTTGCTTCAGCAACTTGTTTTCCCATGATCGTTCCT
CCTGCGACAGTGTCAAGC--ATGTTCTTTGATAAAAGATTTAAAGTTTTATAAAA-ACATGAATAATTAACCATTCTTTC
ATGTCATGGTTAGTACAATTCTTAACAACTTCTTTAATACGTTCCCACATAAGCGCTAGTGGCTTCCGGTCCTCCTGCTT
GAAAC-ATGTAATATTAGCATGTAGATGCATGGTTTTGTAAGCAGAAAATAGGTAATG--------------TTAGCCTT
TCCTCTTAATTAAAAATGATTAAGCATAAATTTTACTGCATTGAGATCAATATCTTTTATGTAAGCTGTGTCAGAAAGCT
CAGTAAAAGTATGTAGATGCATACCCGCGTCTTCTGAAGCAGATCCTCCAAACTGGTTTAGCTGAACCCTAGTAAGTAGG
TTCGGTTTTATTTATTTTTAGAACGAAGGCTC
>chr2B_3
--CTCTGGCTGGATGCACTGCATCCAGCCCTCC-------------CTTTCTTTTCCTTCCTGCTCTCATCTGCCTGTCT
GCATCTCCCAGTCCGTGAACCAGCGATCATAGAAGTCCCGGTCGGTGCTGGAGCACTGCCGAT-GTGTATACCGAGCTTG
ATGCCGAGGGAAAGATGCTAGCTGATGTGCCATCGGTTTCACCAGGTAGACATA----TGCTTCGATTTTTACGTTGACA
TCTGGCTA-----CTCATGTGATCGTATATCTATTTTTGTCGGTGTGTACGTGCCTTGCTTA--TACTTACACATGTGGT
AACCAGTAATTGCATGTCTTTTTTGTTGAGAATCAGTAATTGCATGCTTGGCTTGTACTACTTGCGGTCTCACAGATGAA
TTAGTAGTACTATATATATA--TTTGATTGCTATTTTTATCCTA---TATATATTTAAGGATTCTTTCCCAGATACTAGT
TGTA---ATTAGTAATTATGGCCGTGCTGTTAGGGATTGGGTCTTTGGGGTAATAATTTCATCCTGTTTATCCGTAGGAA
AATTTAGGAGCTGGCCCGGTCCCTTTTCTGAAAGAACAAGGAATGCCATTTTGTCTACTTTATGATGTTTCCATA-CTTT
TTCTATGGCTTTACAGACTTTTCTTCTTGAAATGTAGTAGTAAAACGGAACCT--AGCTAGGTATACACGTAAAGCTTAC
GCAAGGAAAAGACTGGCTAT------------------------------------------------------------
---------------------------TAGCTCGATTGCTTCACATGCTGATAACATATCCTTTTTCGCAACAAGCCACA
GGGTTTGTAGATTGCCAGATCTGATCTGACCTGATTCAGCAAAGAATTCCGAGCTATCAAAGCTGCTTCAACCCGAAGCT
CTAGCACTGCGCTATCTTCCACTTTAAGAAGACTCGATCGATCGTCACGGAAAGAGCAGAGAGAAGTATCAAAAATTCCA
TGGTAGCACCTCATGTTCTTGAGCGCAAGAAATGAGTCTTCGGAGTCGGAGGACATCCAAGAACTGATCAACAGTAGCCT
CAAGTGCAACGCATCCACGCCAGCCGACGACATGGAGAGCGGCAGAGGCGGAGCAGGAGCCGCCGGAAGCACGTCGTCGT
CGCCATCGCCGCCGGTGGTCCTGCCGTCCGAACAGAAAGCACGGTACAGCAGGGAGGAGGACCCCGGTCGTTGCAGCTGC
AGCGATAGCTTCTTCGGCAAGTACTTCTCGTTCCTCCTGCTCATGTTCGTCACCGCGTCGCTGGTGATCCTCCCGCTCGT
CCTGCCACCGCTGCCTCCGCCGCCGTCGATGCTGATGCTGGTGCCAGTGGCAATGCTGCTGATGCTCCTGGTGCTGGCGT
TCATGCCGACGTCAGGTGGCCGGGGTGCGACGGGCCCGACTGCCTACCTGTAGATAACTAGTACGTCCTTTTCTTGTTTG
TTCTGTTGGATTTTGTGATAGGGTAGTCATGGAATCAAGTTTTATGCCCATCAATTGAAAGTAC-------CCTGCTGCT
TTTCTCGGCATACTAAATGAGGATTTATCATGGGATTTGTCCAGCTCAATGAGGCCTTCGGTCAGAACAACAACCTGACT
AATTTGCGCCTTTATTAACCGTGC----TTGCTATATTAACACGAAGGGGATGAAATTTACAGTATTTTACCATGATATA
TTTTTTGAACAATCACCATGATAATTGATGTTATCATATTCAAAAGCCATTTA---------------------------
--------------------------------------------------TCAATAGACC----TTATTCCCTCTCGTTT
CTTGTGATATCAGGCAATAGTTTGCATGTATGTTTACAGCTGCTACATAAAACATGCATCCACTTGATAACATGTA----
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---------------------------------------------------------------TCATTTGAAGATTTCAA
CATGTCACTGAGTATGATTTTCTTGCATATCATCTAGGAATTTCTTTGCTTCAGCAACTTGTTTTCCCTTGATAGTTCCA
CCTACGACAGTGTCAAGCAAATATTCTTTGAAAAATGATTTAAAGCGTTATAAAATACATGAATAATTAACCATTCTTTC
ATGTCATATTTAGGACAATTCTTAACGGCTTCTTCGATACGCTCCCACATAAGTGCTAGTGGGTTGCAGTCTTCCTGCTT
GAAACTATGTAATATTACCATGTAGATGCATGGTTTTGCAAGCAAAAAATAGGTAATGCTA-------------------
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>chr2D_40
---------------------------------------CCGCCTTCTTTCGTTTTCTTCCTTCTCCCGTCTGCCTGTCT
GCATCTCTCGGTCCATGAACGAGCGATCGTAAAAGCCTCGGTCGGTGCTGGATTACTGCTGGTGGTGTATACTAAGCTTG
ATGCCCAGGAAAAGATGCTAGCTGACGTGCCATCGGTTTCACCAGGTAGACATA----TGCTTCGATTTTTACGTTGACA
TCTGGCTAGGCTATGCATGTGATCGTCTATCTACTTTTGTCGGTGCGTACGTACCTTGCTTACATACACACACATGTGGG
CGAAAGCTCGT-------------------AATCAGTAATTGCATGCTTGGATTGTACTACTCGGGGACTCACGGATGAA
TTAGTAATGAG-----TATA--TTTGATTGCTATTTTATGTCCTGCCTATATAGTTAGGGATTCTTTCCCAGATACTAGA
TGTAGTAATTGGTAATGGTTGTGTTAGTT---GGGAACTGGTTTTTGGGGTAATCATTTCGCCCTGTTTACTCGTAGGAA
AATTTAGGAGCTGGCCGGGTCCCTTTTCTGAAAGAACAAGGAATGCCATTTTGTCTACTTTATGATGTTGTCCTCCCTTT
TTCTATGGCTTTACAGACTTTTCTTCTTGAAATGT---AGTAAAACGGAACCTCTAGCTAGGTATACACGTAAAGCTCAC
GCAAGGAAAAGACTGGTTACTGAGTAC-----------------------------------------------------
---------------------------TAGCTCGATTGCTTCACGTGCTGCTAAGATATCCTTTTTCGCAACAATCCACA
GGATTTGTAGATTGCCAGATCTGATCTGATTCTGCG------AGAACTCTGAGCTACCAAAGCTGCTTCGACTCGAAGCT
CTAGCACTGCCCTATCTTGCACTTTAAGAAGAC----TCGATCGTCACGGAAAGAGCAGAGGGAGGTATCAAA--TTCCA
TGGTAGCTCCTCATGTTCTTGAGCGCAAGAAATGAGTCTTCGGAGTCGGAGGACATCCAAGAACTGATCAACAGTGGCCT
CACGTGCAACGCATCTACGCCAGCTGACGACATGGAGAGCGGCAGAGGCGGGGCACGAGCCGCCGGAAGCACGTCGTCTT
CATCGCCCCCGCCCATGGTTCTGCCGTCCGAACAGAAAGCACGGTACAGCACGGAGGAGGATCCCAGTCGTTGCAGCTGC
AGCGATAGCTTCTTCGGCAAGTACTTTTCATTCCTCCTGCTCATGTTCGTCACCGCGTCGCTGGTGATCCTCCCGCTCGT
CCTGCCACCGCTGCCTCCGCCTCCGTCGATGCTGATGCTGGTGCCAGTGGCAATGCTGGTGATGCTCCTGGTGCTGGCGT
TCATGCCGACGTCAGGCGGCCGCGGTGCGACGGGCCCGACTGCCTACTTGTAGATAACTAGTACGTCCTTTCCTTGTTTG
TTCTTTTGGATTTTGTGATAGGGTAGTCATGGAATCAAGTTT-ATGCCCATCAATTGAAGCCTTGAAGGTACCTGCTGCT
TTTCCCGGTATACTAAATGAGGATTTATCATGGGATTTGTCCAGCTAAATGAGGCCTTTGGTCAGAACAGCGCCGTGACT
AATTTGCGCCTTCTTTATTAACTATGCTTTGCTATATTAACACGAAACATTGTACTAT----------------------
--------------------ATAATTGATGTTGTCATTTTCAAGAGTCATTTAATTTCTTCAATACACAGGGCTCACTAT
GGTTCGAGGCTTCGAGCACCTGATTGC--AAAATTTCTATTTTTTAAATATCAATAGACC----TTATTCTCACTTGTTT
CTTGTGATACCAGGCAATAGTTTAGG----TGTTTACAGTTGCTACATAAAACATGCACCCACTTGATAACATGCATCTC
TACTCCCAATGGAGCAATTGATAGTCTCGCTTTCAGGGTTTTTTCGTCCCACCTCTCATGGTTTTTTTGGTACCTCCTCC
CACCTTCGCTGGTTTTTTTTCGTAGATTTTTTTTCGTCCCCTCCCCCCACTTCATCGATTTATTTTCACGTCACCCTTTC
ATACAACGAAAGAAATCTAAACATATCAGAACTTTCCATACTGACGCAAGTTATTTAGTAATGTAGAATCAATCACGAAC
AATCTCTAAAGATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCAATCACATTAATTAGAAAACAAATAATTAAT
TTTCAGAAAAATCGCTCAATCACATTAACCTTACCTTAACTCACGGATGGTAATCAATCTCCAAACAAAGGAAACAATAC
ATCAAGGGAGCAGTAAATAAACTCCCTTTCTTATGACATGTATATGATCTTCCCTTCCCTCTTCGTTGTCGAGCGTTCTT
GATTCTCGAGGCCGATGCTTGGGCTGCGTCACTGGGTCGCGACGGTGCCGGAGGACGAGGACGGCGAGGCCGGGTGCCGC
GGCACCGCGTTGGCCGCGGCCGGTGAAGGGGGCGAAGAAGGGCGACTTCCCTGGCCCTGGCCGTGGCCGTGGCCCTGGGA
GTTGGTGCGGTGGAAGCGGCACTTGAAGGACCCGGCGTGGGTGGCCAGCGCGCAGACGCACTTGGAAGCGGGCCCGTGGC
CCGCGTCGGACGGCGCCGACGCCGACCCGGGCCACCTCCTCCGCGTATTCTTGGAGCTGTGGCTGGCCGATTTACATGAA
ATTAATTTCCTCAGTTGTGGTGGCAAATATAATACACATAATCCATATTGTTATGCACTAGCGTGTGTGTGTGAAATAGA
TGGATTATGGTCCCGTACCCAATAAGATGGATATGTGTGTGTGTGTTAGAGAGAGAGAGAGAGGGAGAGGGGGAGAGAGA
GTGAAAAGAGGGAGGGAGAGAGAGTGTGTGTGAGGATTTGATGGTAAAAAAGGTCGACGATGTCACTTGATATGTATGAG
AATATTAATATTGAACTCTTAAAGTTAATGTGGCCCCGTTGCAACGCATGGGCGTTCTTCTAGTCATTTGAAGATTTCAA
CATGCCACTGATCATGATTTTCTTGCATATCATCTAGGAATTTCTTTGCTTCAGCAACTTGTTTTCCCATGATAGTTCCT
CCTGCGACAGTGTCAAGCATGA--TCTTTGATAAAAGATTTAAAGTTTTATAAAA-ACACGAATAATTAACCATTCTTTC
ATGTCATGGTTAGTACAATTCTTAACAACTTATTTGATATGTTCCCACATTAGCGCTAGTGGCTTCCGGTCTTCCTGCTT
GAAAC-ATGTAATTTTAGCATGTAGATGCATGGTTTTGTAAGCAGAAAATAGGTAATGTTAACCGTCGTTCTTTAGCCTT
TCCTCTTAATTAAAAATGATTAAGCATAAATTTTACTGCATTGAGATCAATATCTTTTATGTAAGTTGTGTCAGAAAGCT
CAGTAAAAGTATGTAGATGCATAC--------------------------------------------------------
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>SNPs
SS---S---------------------------SSSSSS--------S--------------------------------
-------------------------------------------------------------------S------------
------------------------------------------------------SSSS----------------------
----S------------------S------------------------------------------------------S-
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--------------------SS----------------S-----------------------------------------
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--------S-----------------------------------------------------------------------
-----------------S--------------------------------------------------------------
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------------------------------------------
--------------------------------S-----------------------------------------S-----
---S--------------------------------------------------------S-------------------
--S--------------------------------------S--------------------------------------
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---------S---------------------S------------------------------------------------
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-----------------------S-------------------------------------------------------S
-------------S---------------------------------------S---------S----------------
------SS-------------S----------------------------------------------------------
--------------------------------S------S--------------S--SS-SSSS--SSSSSS-S-SSS-S
------------------------------------------------------------S-------------------
-------------S------------SSS--SS---S-SS-----S----------SS--SSSS----------------
--------------------S--S--------------------------------------------------------
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-------------------------------------------------------------------------S------
----------------------S---------------------------------------------------------
-----------------------------------S-----------------------------------S--------
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-----------------------------------------------------------------S--------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1021
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-----------------------------------------TCGTCACGGAAAGAGCAGAC-------------------
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>reverse_3545
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------------------------CCGCGTCTTCTGAAGCAGAT------------------------------------
--------------------------------
