>input_sequence_80217
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------------------------------------------------ATGCCTCACCACCACGGCGCGCTCCCCGACGA
GGAGGCCCCGTCGCCGCGGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCGGCCGCCTCCCGCCGCGGCCACGGCC
ACGGATACCGGCGCCTCGAGTCGGCGTCCGTCG------ACGTGGTGAGGGTGGAGGTGGGCACGACGGCAAAGGCGAGG
AGCGTGTTCCACGTGGACCCGGCAGTACTGGAGGCCGAGCCAGTGCGCCGGCTGCTGGCCGCGGCTGGGCGCCGGACCGC
TGGCGGCGCGGTGGCGGTGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCG
CCGACGACCTGTCGGAGATCGTGGAGTTCTACTCGGAGGAGGAGGAGGACGAGGAGCACCACGACGACGGCCACGGGTTC
AAGCTCAAGCGCTAG-----------------------------------------------------------------
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>chr2A_1_TraesCS2A01G158500
TACGATCTCATGGTCTAAGGAAAAGATACTTGACATTGGAAAAACTCTAGCAAACGAACTATACGATCTTGTGCTATGTT
TAGGATTGGGTCTTGTCCATCACATCATTCTCCTAATGATGTGATCTCGTTATCAATGACATCCAATGTCCATAGTCAGA
AAACCATGACTATCTGTTGATCAACGAGCTAGTCAACTAGAGGCTTACTGGGGACATGTTGGTGTCTATGTATTCACACA
TGTATTATGATTTCCGGATAACACAATTATAGCATGAATAAAAGACAATTATCATGAACAAGGAAATATAATAATAATCC
TTTTATTATTGCCTCTAGGGCATATTTCCAACACCATCTGCCCAACCGCAATCAACACCGTTGAGATGAGGAGACTCGAG
AAAACGTTATTGACCAGATCAACACCATCGCCACCAACCTACTAAAAGCCACAAGC------------------------
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----------------------------------------------------AGATCGGGGCCTCCCTGCACTCCATTCA
AGTCAATGGAGGAGGGAAATGACGACCTACAAACGGAGGAGGGGGTGTGGCGGCGCAGTGTGCGCAT-AAAATCTCAATG
CATTTTAATAATGTAAAATGTGTGAAATGAGATAAAAAAATATTTGCGTCGAAGTAAGGCAGTAGAGCGTATATATGAAG
GGATTATGACACCAAGCAGGTTTCTAGGTGGCCGATCCTATCAGTTTATGAGCAACAAAAACAACGACTCCATGTCGATC
GAGAGAGAGAAAACGAAAGGAAAACCAAAAGTAAACGCAAAAGCCAC-CTTCCGTGATCCGGATCCATTCCGGCAGAACC
CCCCGCCCGGGTGGTAACTCGACCGTTAGTTCCAAACCCTCCGTCCAACATAAAAGGACTTC-ACCACGCAACGCAAGGC
CGCCGATCGCTTCGCTCGCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCGCCAGGTTACCTCCGGTCTGGCC
AGTTCCTCCC---------GTAGGCCAATAGCAAGAAACCCCGCAACAATGCCTCACCACCACGGCGCGCTCCCCGACGA
GGAGGCCCCGTCGCCGCGGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCGGCCGCCTCCCGCCGCGGCCACGGCC
ACGGATACCGGCGCCTCGAGTCGGCGTCCGTCG------ACGTGGTGAGGGTGGAGGTGGGCACGACGGCAAAGGCGAGG
AGCGTGTTCCACGTGGACCCGGCAGTACTGGAGGCCGAGCCAGTGCGCCGGCTGCTGGCCGCGGCTGGGCGCCGGACCGC
TGGCGGCGCGGTGGCGGTGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCG
CCGACGACCTGTCGGAGATCGTGGAGTTCTACTCGGAGGAGGAGGAGGACGAGGAGCACCACGACGACGGCCACGGGTTC
AAGCTCAAGCGCTAGTTCATTAAGCTTCTCCAAAGCTATGAACTCGATCCGTTTACCAGCGATGATCCTCATCGTATTAC
GCACGTACGCGTACACCATAGCATGTACTACTACCCCGTGTAGTAATTCGATCGTCCACTAGTACGTGCACTAATTAAGC
TGCTAGCCAGGGATGCATGATCCACATATGTGTCTTTGACTCTGTGTCTGTGGATCGATTCAACTGGAT---GCAGGTTC
ATAGCGCGGAAGAGCGTGGAACCTGGTTAATTACT---TTATGTAAGCTTATTACTGAAGTTAAATAATAATCTGATGAT
GGAGGAAACATTTCTTTAGAACACACACAGGATGAA-----CACTTGGGTGGTGCTATGTTACCGGCCGCAGATTCTCTT
GCGAGCCAACTACTTTTGGCTC-----------------------------------GCGACGGATTTCTGAGCACGATC
GACTCGCCGTGGC--GAGTTGTTCGACCGGACGTGGCAGCTACCCTGAGGCGTAACCTGCGTAGCTGGTCATCGGTGCTG
TGGACGGTCTCAATGTCAATGATCAA---TGT------GGCAGGCAGGAGGCCACATGGATGATGGGCAGACCGTGTCGG
CCGGCCAGCCGGAGCACCCCAAATGCCAAGGTGCCCCGCCCACT--AGCACGGCGCTCCGTCGCCGGTAGTCTCCCCGGC
CGGCCG--------------------------GCTAGCCGACG----CGCGCGCGGGGGCAACTTGTTGGGGGGTCGATG
TCGTCGAGGCGT-GTATCAGTGATGGATTGGATCAGCTGCCTAGGGCCCAATCAAATCAAATCAAACAGAATGCAGGCGA
TGTA-------CTTAAAGCGAGACGAGATGTGAC---AGCCGCCGGACATGCGACGAGGTCGCTGCCTGATTGCCTGAAT
ATGTCAAGCCTCAAGCCTGCCCTGCGTGCATGATCTTCCACGGAACGTGCATTACATATGCAGCAGGCCTCGTCGCCATC
CCTTCGCCTCTACGG-ATCAGCCACGGCTATATACAGCTTACTTAC----CCAACACCTACCATGCGATGCCGATGCGCG
>chr2B_380
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-----------------------------------------------------------GTTGAGATGAGGAGACTCGAG
AAAACGTTATTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGATCGGGGCCTCCCTGCACTCCATTCG
AGTCAATGGAGGAGGGAAATGACGACTCACAAACAGAGGA---GGTGTGGCGGCGCAGTGTGCCATG-AAAATCTCGATG
CATTTTAATAATGTGAAATG---------AGATAAAAAAATATTTGCATCGAAGTAAGGCAGTAGAGCGTATATATGAAG
GGATTATGACACCAAGCACGTTTCTAGGT---CGATCCTATCAGTTTACGAGCAACAAAAACAACGACTCCATGTCGATC
GAGAGAGGGAAAATGAAAGGAAAACCAAAAGTAAACGCAAAAGCCCAGCTTTCGTGATCCGGATCCGTCCCGAAGAAACC
CCCC-----GGTGGTAACTCGACCGTTAGTTCCAAACCCCCCGTCCAACATAAAAGGACTTCCAGCACGCAACGCAACGC
CCCCGATCGCTTCGCTCGCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCGCCAGGTTACCTTCGGCTTGGCC
AGTTCCTCCC---------GCAGGCCAAGAGCAAGAAACCCCGCAGCAATGCCTCACCACCACGGCGCACTCCCCGACGA
GGAGGCCCCGTCGCCGCGGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCCGCCGCATCCCGCCGCGGCCACGGCC
ACGGATACCGGCGCCTCGAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGTGGGCACGACGGCGAAGGCGAGG
GGCGTGTTCCACGTGGACCCGGCGGTGCTGGAGGCCGAGCCGGTGCGAAGGTTGGTGGCCGCGGCGGGGCGGCGGACCGC
GGGTGGCGCGGTGGCGGTGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCG
CCGACGACCTGTCCGAGATCGTCGAGTTCTACTCGGAGGAGGAGGACGAGGGCCAGCACAAA------GGCCACGGGATC
AAGCTCAAGCGCTAGTT----AAGCTTCTTCAAGC---TAAAATCGATTCGTCT---AGCGATGATTCTCATCGTATTAC
GGACGAACGTGTACACCATAGCATGTACTACTACTCCGTGTAGTAATTCGATCATCCACTAGTACGTACACTAATTAAGC
TGCTAGCCAGGGATGCATGGTCCACACA--------------TGTGTCTGTGGATCGATTCAACTGGATCATGCAGGTTC
ATAGCGCGAAAGAGCGTGGAACCTGGTTAATTTCTTTATCATGTAAGCTTATTATTAAGGTTATAAAT--ATGTGATGAT
GGAAGAAACATTTGCTTACAACAAACACATGGTGGGAGGGTCACTTGGGTGGCATGGCATGCCCT---GCAGATTCTCTT
GCGAGCCTGCTACTTTTGGCCGTCGCGTAG----GTAGAACTGCAACACCCGCCGTGGCGACGGATTTCCGAGCATGACT
CTTCGTGA--AAAAAGAGTCGATGGACCGGACGTGGCAACTACCCTGAGGCGTGACCTGAGCTAGTCCATC--------G
TGGATGGTCTCAGTGTCAATGCGAAGTAGTGT------GGCAGGCAGGAGGCCACATAGATGATGGACAGACCGTGCCGG
CCGGTCAGCCGGAGCACCCCAGGTGCCAGGGTGTCCCGCTCCGACCAGCACGACGCTCCGGCGCCGGTAGGCTTCCCGGC
CGGCG--GGCGGGCCAGGTGGGTGCTGCTGCAGCTAGCCGACG----CGCGCGCGGGGGCAACTTGTTGGTGGGTCGATG
TCGTCGTCGAGGCGTACCTGTGATGGATTGGATCAGCTGCCTAGGCCCCAA-----CCAAATCAAACAGAATGCAGGCGA
TGTA-------CTTAAAGCGACACGAGACGTGAC---AGCCGCCGGACATGCGACGAGGTCGCTGC-----TGCCTGAAT
ATGTTAAGCCTGCCTGCG----TGCGTGCTTGATCTTCCACGGAACGTGCATTACATATACAGCAGGCCTCGTCGCCATC
CCTTCGTCTCTACGG-ATCAGCCACGGCTATATACAGCTTACTTACTTACCCAGCACCTACCTTGCGATGCCGACGCGCG
>chr2D_460
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-------------------------------------------------------TCGGGGCCTCCCTGCACTCCATTCA
AGTCAATGAAGGAGG-----GATGACCTACAAACGGATGA---GGTGTGGCGGCGCAGTGTGCCCAGAAAAATCTCAATG
CGTTTTAATAATGTAAAATGTGTGAAATGAGATAAAAAAATATTTGCGTCGAAGTAAGGCAGTAGAGCGTATATATGAAT
GGATTATGACATCAAGCAGGTTTCTAGGTGGCCGATCCTATCAGTTTATGAGCAACAAAAACAACGACCCCATGTCGATC
GAGAGAGGGAAAACGAAAGGAAAACCAAAAGTAAACGCAAAAGCCAC-CTTCCCTGATCCG-ATCCATTCCGGCACAACC
CCCCACCCGGGTGGTAACTCGACCGTTAGTTCCAAACCCTCCGTCCAACATAAAAGGACTTCCACCACGCAACGCAACGC
CCCCGATCGCTTCGCTCTCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCACCAGCTTACCTCCGGGTTGCCC
AGTTCCAGTTCCAGTTTCAGCAGGCCAAGAGCAAGAAACCCGGCAACAATGCCTCACCACCACGGCGCGCTCCCCGACGA
GGAGGCCCCGTCGCCACGGCCCTCCGCGGCCGGCTGCTACACCTTCCTCCGCTCGGCCGCCTCCCGCCGCGGCCACGGCC
ACGGATACCGGCGCCTCGAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGTCGGCACGACGGGGAAGGCGAGG
AGCGTGTTCCACGTGGACCCGGCGGTGCTGGAGGCCGAGCCGGTGCGCAGGTTGGTGGCCGCGGCGGGAAGGCGCACCGC
GGGCGGCGCGGTGGCGGTGACCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCG
CCGACGACCTGTCGGAGATCGTCGAGTTCTACTCGGAGGAGGAGGACGACGAGGAGCACCACGACGACGGCCACGGGTTC
AAGCTCAAGCGCTAGTT----AAGCCTCTTCA-AGCTATAAATTCGATTCATCT---AATGATGATTCTCATCGTATTAC
GCACGTACGTGTACACCATAGCATGTACTACTACTCCGTGCAGTAATCCGATCATCCTCTAGTACGTACACTAATTAAGC
T-------------GCATGATCCACGCA--------------TGTGTCCGTGGATCGATTCAACTGG---ATGCAGGTTC
ATAGCGCGAAAGAGCGTGGAACCTGGTTGATTACT---TTATGTACGCTTATTATTGG-GTTAATAAATAATGTGATGAT
GGAAGAAACATTTGTTTGCAACAAACACATGATGGA-----CACTTGATGTCTGGCATCCA--CT---GCAGATTCTCTT
GCGAGCCTGCTGCTTTTGGCCGTCGCCTAGGTGCGTAGAACTGCAACACCCGCCGTGGCGACGGATTTCCGAGCACGACG
ACTCTTGGTGAAAAAGAGTCGATGGACCGGACGTGGCAACTACCCTGAGCGG-----------------TC--------G
TGGATGGCCTCAGTGTCAATGATCAGTAGTGTGGCAGGGGCAGGCAGGAGGCCACATGGATGATGGGCAGACGGTGTCGG
CCGGCCAGCCGGAGCATCCCAAGTGCCAAGGTGTGCCTCCA--ACCAGCACGACGCTCCGTCGCCGGTAGGCTCCCCGGC
CGGCGGCGGCGGGCCAGGTAGGTGCTGCTGCAGCGCTAGCTAGCCGACGTGCGGGGGCGAAAATTGTTGCTCCCGGGTCG
ATGTCGTCGAGGCGTATCTGTGATGGATTGGATCGGTTGCCTAGGCCCCAA-----TCAAATCAAACAGAATGCAGGCGA
TGTACTTAAGGCTTAAAGCGACACGAGACGTGACGACAGCCGCCGGATATGCGACGAGGTC---GC-----TGCCTGAAT
ATGTTAAGCCTGCCTGCG----TGC----ATGATCTTCCACGGAAGGTGCATTACATATGCAGCAGGCCTCGTCGCCATC
CCTTCGTCTCTACGGGATCAGCTACGGCTATATACAGCTTACTTACTTACCCAGCACCTACCTTGCGATGCAGACGCGCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
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----------------------------------------SSS--------------------S--S-------------
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-------S-------------------------------------------------------------------S----
----S------------------------------------------------------------------------S--
-S-----------------------------------------------------------------------SS-----
--------------------S-------S---------------------------------------------------
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-------------------------------------------S--------------------------S---------
-----------------------S--S--------------S------S--S--S----------S-----S--------
S-------------------------------------------------------------------------------
----------------------S-----------------------S---------------------------------
-----------------SSSS--------S---------S--S-----S---S-SSS---------S-------------
---------S------------------------S------------------S-------------S------------
--------------------------S-SSSSSSSSSSSSSS--------------------------------------
--------S---------------------------------------------S---S------S------S-------
---S---------S----S----S-----S----S-------------------SS--S-SS--SSSS------------
-------SS-----------SS-----------------------------------------------S--------SS
SSSSSSSSSSSSS------S-S-S--------------S--------------S-----S-SSSS-SSSSSSSSSSSSS-
----S-------S------------S------------------------------------------------------
----------------------S----------S-------SSS--------S-----------------S---------
----S-----------------------------------------------------------------S---------
------SS-S-S------S--------------------------S-----SSSSS------------------------
---------------------S------S-------------------------------------SSSSS---------
----S------SSSSS-SSSSS----------------------------------------------------------
------S----------------------------------------------S--------S-----------S-----
>forward_226
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----------------------------------------------ACTGGGGACATGTTGGTGTC--------------
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>reverse_2135
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------------------------------------------------------CTATGTTACCGGCCGCAGAT------
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