>input_sequence_80203
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--------------------------------------------------------ATGGAGTCCTCCTGCCGCTCCAGC
AGGCCGAGCCCT---CTCCTCGCCTTCCTCTGCTTCGTCGTCGTCCTCCTCCTCCTGGTCCTTCCCCTGCACCCGGCGTC
CGCGGCGCCCACGTCAAGTGAGTTTCACCCCTTTCTGCTCCGACACTCGGTTCCTGATTCTTCCGTTCTTGATCCATGAT
ACATGTGTCATAGATCCAGCTGCTTTTGCCCCGGTTGCCGTCGCTGATCATTCGTGTGGTGATCTTGCAGGGAGCATGCG
CCTGAGGAACCAGCAGCACCCGCCGTCTCTGAAGCTTTCTTCTCTGCAGGAGATGACGACGGCGGCGA---CCGGGAAGC
TGCGGGGCCGGGCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCCGGCCCCAACAACCGCCATGACCCT
CCGAAGGGCCCCGGAAGAGGGTGA--------------------------------------------------------
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>chr1B_1_TraesCS1B01G316000
TGACATGTTGAGTTGGTTCTCTCTGTCTTCTGAGGGGGTGAATGCAAAGCAGTCTATTAAGCCAGGCACTATTGCTGAGC
TAAATTGACAAAAAAATATTGGTAGCCATAGTTGTAGTTTAAGTAGTAGCGAGTTGTCTGATATGTATAAAGAGCCCGTT
GCAACTGAGCCCGTTGCTAAATTGACAAAAAAGATCGCCAATGTCACTTGATATGTATGAGAATATTAAATATATTATTA
ACATAATTAATATTGAACTCTTAAAGTTAATATGGTCCCATTGCAACGCACGGGCGTTCTTCTAGTTCAACTAATCATG-
--TACATCATTGCCGTTGACCGAGAATGGTAAGGAGGGTCTATGTTTGGGGCATGATAATTCCATATGAATTTCACTACA
GATAATGTTTGGCAAAAAATATTCAAGTGCTAATCAATTC-TTAATTATGTGGTTTATATTTTTTGAAAACAAT----TA
TATGCTTTACATTGGGTCTATATTTGGAACGGAGTAAGAGCATAATTGGTTTGATGCCAACATTTGACATTGCCAATATT
TGGCAAGCCAACATTTGGCAAAATCAAAAGTTGCCTAATGTTGGCAACTTTTTGTGAGGTTGAGAAGAAAAGTTGGTAGT
CAACCAATCACTAGCCAACATTTGGTATTTGCCAAATATTGGCATTGCCAACTTTTGGCATCGAACCAATCATGCTCTAA
GTCCAGACACAGCAAAATTTTAATAGTACTACTAGTAGTGCCACAAGGAGATGCACAGGGGACGACCT-CGCAGAGCATC
CCCCGCCTTCTAAACCCAGCAAGCAATGCGAAGTTGACCTTTTGTAGTGGGACAAGAAGAGAAGGCCAGCCATCGGCTAT
CCCGCTAGCCCTGGTCCAACTATAAAACCCCAAGCACTAGCAGGCAACACCTCACCACCCCACACACCATTGCCTACCAC
CACCACCA-------CCCGTGAGCAGTGACAGTTGTTTTCGTTTCTAGCAATAGCAATGGAGTCCTCCTGCCGCTCCAGC
AGGCCGAGCCCT---CTCCTCGCCTTCCTCTGCTTCGTCGTCGTCCTCCTCCTCCTGGTCCTTCCCCTGCACCCGGCGTC
CGCGGCGCCCACGTCAAGTGAGTTTCACCCCTTTCTGCTCCGACACTCGGTTCCTGATTCTTCCGTTCTTGATCCATGAT
ACATGTGTCATAGATCCAGCTGCTTTTGCCCCGGTTGCCGTCGCTGATCATTCGTGTGGTGATCTTGCAGGGAGCATGCG
CCTGAGGAACCAGCAGCACCCGCCGTCTCTGAAGCTTTCTTCTCTGCAGGAGATGACGACGGCGGCGA---CCGGGAAGC
TGCGGGGCCGGGCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCCGGCCCCAACAACCGCCATGACCCT
CCGAAGGGCCCCGGAAGAGGGTGAACCAAGCTCACCGCCACCGGCACCAGCTGGCCTGGCCTGCTGCTGCTGGTGCCGCT
CTGTCCGTAGCTATAGCCATTACTACTG---TTACTGTGCTTCACACCATGCATGCATAAACTAAGGAAA---GATCAAG
TGATGTTTTGCTCGGCCGGGTCTCTCCTCTCCTCT--TCCTAGTACTGTATCTGTCAACTCAACTGTCATGTACTGATGT
ACATCGTGTTCCATATGACACCACAGTTTCAGATTAGTTAATGCCGACT-----------CTCTTGGCCTCTCTCGATCA
ATCGTTCCATCTAATCAATCGGTTTAGGGCGCCCACGGGTTTGCTTGCTCCAATCAGTTAACACACTGATGCATGCTGTA
CGTTTAAG-----AAATTCAGCAATCAGCAGCGGGGGCATCATTGCTCGCTTGACCGCGTCCTGTTCCTGCTAGATCTCG
TCCGATCTGTTGCTTCTCGGCGTAACCCGACATGTC-CCCCCTCGTGCGTGGGACCTGCTC-GCTCGCTCGTGACGCGTC
GGTGCACGGTTGCGGTGAGAGGGAGAGGGAAAGGCTCGCTCGTGACCTGCGAGCTACCTCTGCTCCGAAAACAACTCCTG
TGCC---GCTGCTCGACAGATGGACGGTGCGGGATA-----CCATCGTGACGTGGGATGCCTTGATGCTGTCCCGTGAGT
TCTGTGTTCGAAAACAACTCCGGATCGGTGATCATCCCAACGGAG----CCTATGTGCCATACAAAAACTTCAGACAGAG
AGACAGACGCGTGTATCTGGCCCTTGATAAGACTTGTGTATGTATGTGATCGCTCGGCCCCACTCGTCCTACGCGCATCG
CTTTGCGTGATAAGGACATCTCCAACGCGGACCCTAAAACCGTTCACATCAAACCGGACCGTACTGTCCAGACCGCTGAA
GTCATTCAACATGGGACTGTATCATCAGGCCCGGGCCTGATGGGGGGCAGGGGGGCGGCCGCCCCGGGCCCCCGGAGTGG
AGGGGCCCCCACCCAGGGACGT
>chr1D_306
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-----------------------------------------------------------------TTCAATTAATCATGT
ACTACATCATTGCCGTTGACCGAGGACGGTAAGGAGGGTCTATGTTTGGGGCATGATAATTCCATACGAATTTTGCTTCA
GATAATGCTTGGCAAAAG-TATTCAAGTGCTAATCAATCCATTAATTATGTGCTTTATGTTTTTCTAGAATCAATTAATA
TATGCCTTACATTTGGTCTATATTTGGAACGGGATAAGTCCAGGCACAAATTATGTTCCCCTTGATCCAGCTACCGGTGG
TAGCTATTTCCAACTCAAAAAAATAGTAACAATGGTATCCATCAAAATAGTACTCCCTCCGTCCCATAATATAAGAGCGT
TTTAGACACTTAAAAACGCTCTTATATTATGGAACGGAGGGAGTACTAC-------------------------------
-------------------------GTACTACTAGTAGTGCCACAAGGGCATGCACAGGGG-CGACCT-CGCAGAGGATC
CGCCGCCTGCTAAACCGGGCAAGCAATGTGAAGTTGACCTTTTGTAGTGGGACAAGAGGAGAAAGCCAGCCATCGGCCAT
CCAGCCAGCCCTGGTCCAACTATAAAACCCCAAGCACTAGCAGGCAACACCTCACCACAC--CACACCATTGCCTACCAC
CACCACCACCACCACCCCGTGAGCAGTGACAGTTGTTTTCGTTTCTAGCGACAGCAATGGAGTCCTCCGGC---------
AGGCCGACGCCTCTCCTCCTCGCCTCCCTCTGCCTCGTCGTCGTCCTCCTCCTCCTCGCCCTTCCCCTGCAGCCGGCGTC
CGCCGTGCCCACGTCAAGTAAGCTTTCTCCCTTTCTGCTCCGACACTCGGTTCCTGAACCATCCGTTCTTGATCCATGGT
ACATGCGCCATAGGTTCAGTTGTTTTTGCCCCGGTTGCCGTCGCTGATCATTCGTGTGGTGGTCTTACAGGGAGCATGCG
CCTGAGGAGCCAGCAGCGCCCGCCGTCTCTGAAGCTTTCTTCTCCGCAGGAGATGACGACGGCGGCGGCGGCCGGGAAGC
CGCAGGGCCGGGCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCCGGCCCCAACAACCGCCATGACCCT
CCGAAGGGCCCCGGAAGAGGGTGAACCGAGCTCACCGCCACCGCCACCAGCTGGTCTGGCCTGCTGCTGCTGGTGCCGCT
CTGTCCGTAGCTATAGCCGTTACTACTGTAC------TGCTTCACACCATGCATGCATAAACTAAGGAAA---GATCAAG
TGATGTTTTGCTCGGCCGGGTCTCTCCTCTCCTCTCTTCCTAGTACTGTATCTG-----TCAACTGTCATGTACTGATGT
ACATCGTGTTCCATATGACACCACAGTTTCAGATTAGTTAATGCCGACTAGCAG-ACTCTCTCTTGGCCTTTCTCGATCA
ATCGTTCCATCTAATCAATCGGTTTAGCGCGCCCACGGGTTCGCTTGCTCCAATCAGTTAACGCGCTGGTGCATACTGAA
GGTTTAAG-----AA-TTCAGCAATCAGCAGCGGGGGCATCATTGCTCGCTTGACCGTGA--------TGCTAGATCTTG
TCCGATCTGTTGCTTCTGGGCGTAACCCGACATGTCTCCCCCTCGTGCGTGGGTCCTGTTGTGCTCGCTCGTGACGCGTC
GGTGCACGGTTGCGGTGAGAGGGAGAGGGAAAGGCTCGCTCGTGACCTGCGAGCTACCTCTGCTCCGAAAACAACTCCTG
TGCTGCTGCTGCTCGACAGATGGACGGTGCACGGAT----TCCATCGTGACGTGAGATGCATAGATGCTGTCCCGTGAGT
T--GTGTTCGAAAACAACTCCTGATCGGTGATCATCCCGACGGA----ACCTATGTGCCATACAAAAACTTCAGACGGAG
AGACAGACGCGTGTGTCTGACACTTGATAAGATTTGCGTATGTACGTGATCGCTCGGCCTCAGTCGTCCTGCGCGCACCG
CTTTGCGCGACAAGAGCATCTCC---------------------------------------------------------
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>chr1A_733
TACTAC--------------------------------------------------------------------------
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--------------------------TACTAGTAGTAGTGCCACAAGGACGTGCACAGGGGAGGACTTCCGCAGAGAATC
CCCCGCCTGCTAAACCGAGCAAGCAATGCGAAGTTGACCTTTTTTAGTGGGACAAGAGGAGAAAGCCAGCCATCGGCCAT
CTAGCCAGCCCTGGTCCAACTATAAAACCCCAAGCACTAGCAGGCAACACCTCACCAC-CCACACACCATTGCCTACCAC
CACCACCACCACC----CGTGAGCAGTGACAGTTGTTTTCGTTTCTAGCAACAGCAATGGAGTCCCCCGGCCGCTCCAGC
AGGCCGAGGCCT---CTCCTCGCCTCCCTCTGCCTCGTCGTCCTCCTCCTCCTGGCCGTCCTTCCCCTGCAGCCGGCGTC
CGCCGTGCCCACGTCAAGTAAGCTTTCTCCCTTCTTGCTCCGACACTCGGCTCCTGATTCTTCCGTTCTTGATCCATGAT
ACATGCGCCATATATAGATTCA-----------GTTGCTGTCGCTGATCATTCGTGTGGTGGCCTTACAGGGAGCATGCG
CCTGAGGAGCCAGCAGCGCCCGCCGTCTCTGAAGCTTTCCTCTCGGCAGGAGATGACGACGGC---GGCGGCCGGGAAGC
CGCGGGGCCGGGCGGCGGCGAGGATGGTCGTGGAGGTGAACGACTACCCCGGGTCCGGCGCCAACAACCGCCATGACCCT
CCCAAGGGCCCCGGAAGAGGGTGAACCGAGCTCACCGCCACCGGCACCAGCTGGTCAGGCCTGCTGCTGCTGGCGCCGCT
CTGTCCGTAGCTACAGCCATTACTACTGTTATTACTGTGCTTCACACCATGCATGCATAAACTAAGGAAAAAAGATCAAG
CGATGTTTTGCTCGGCCGGGTCTCTCCTCTCCTCTCTTCCTAGTACTGTATCTG-----TCAATTGTCATGTACTC----
-CATCGTGTTCCAGATGCCACCACAGTTTCAGATTACTTAATGCCGACCAGAGATACTCTCTCTTGGCCTCTCTCGATCA
ATCGTTCCGTCTAATCAGTCGGTTTAGGGCGCCCACGGGTTCGCCTGCTCCAATCAGTTAACGCACTGCTGCATGCCGTA
GGTTTAAGAAAGAAA-TTCAGCAATCAGCAGCGGGGGCATCATTGCTCGCTTGACCGTGA--------TGCTAGATCTCG
TCCGATCTGTTGCTTCTGGGCGTAACCCGACATGCC-CCCCCTCGTGCGTGGGTCCTGTTGTGCTCGCTCGTGACGCGTC
GGTGCACGGTTGCGGTGAGAGGGAG-GGAAAAGGCTCGCTCGCGACATGCGAGCTACCTCTGCTCCGAAAACAACTCCTG
TGCTGCTGCTGCTCGACAGATGGATGGACGGTGCACGGGCTCCATCGTGACGTGAGATGCCTAGATGCTGTCCCGTGACT
TCTGTCTGAGTG---------------------ATCCCAACGGAACCTACCTATGTGCCATACAAAAACTTCAGGCAGAG
GGACAGACGCGTGTATCTGATCCTTGATAAGACTTGTGTA----------------------------------------
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>SNPs
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------
------------------------S-S---------------------------------------S------SS--S--
-------S---------SS-------------------S-------------S-----S-----SS-S--SS-S------
-----S-------S------------------SS----SS--SSSSSSSS--SSSSS-SS-S-SSSS--SSSS-SSSSSS
-S--S-SSSSSS-S-SSSS-----SSS--SSSSSS--SSSS-SSS--SSS-SSSSSSSSSSSSSS-S--S-SSS-SSS--
SSSSS-SS-SSS-SSSSS-SS--SSSS-S--SS-SSS-SS-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS------------------------S--------------------------S---
--------S-------S----------------------------------------S-----S-------------S--
--S--S----------------------------------------------------S---------------------
---------------------------------------------------S----------------S-----------
--------S----------------S-------S----------------------S--------------S--------
---S-S-------------S--S--SSS----------------------------------------------------
-----S-S-------S---S--S--------------------------------------S----S-------------
--------S--------S--------------------------S----------------------S------------
S-------------------------------------------------------------------------------
---------------------------S--------------------------S-------------------------
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------------------------------------------------------SSSSS---------------------
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-----------------------------------------S--------------------S-----S-----------
S--------------S-----------------------------------------S-SSSSSSSSS------------
-----------------S-----------------------------------S----S-S-------------------
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---S---------------------------S-SSS------------------S-------S-----------------
---------------------S----------------------S-----------------------------------
-------------------S------------------------S--------------S--S-------S------S--
-------S--S---SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_345
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-----ATCATTGCCGTTGACCGAGA-------------------------------------------------------
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>reverse_2143
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--------------------------------------------------------------TGATGCTGTCCCGTGAGT
TC------------------------------------------------------------------------------
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