>input_sequence_80172
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----------------------------------------ATGACGGGGATGACTATGGCCGGCGCGTCGTCTCCCTCCA
AGAAAAGCGGCCTCCGGGGGCCGCGGCCGCAGCCGCTGAAGGTGGCGTCGGCGCCGCCGTCCTCCAGGCCGTCGACCAAG
AAGGCCCACGGTGGCGGTGCGCCGGTGATCGTCTACGAGCACACGCCCAAGGTCGTGCACGCGCGGCCGCACGAGTTCAT
GACCGTCGTGCAGCGGCTGACCGGCAAGCCGGCGCCGGCTCCGGCGCTGTTCCCTGGCTACGATGTCCCCGGAGCGCCTA
TGGAGGAGGGAGCTGGAGTAGGAGACCCGCTGCTGCTCACCCTTGGGCACGGGCAGCATCCGCCCATGGCGGCCGGGCAG
CTCATGTCCCCCGGCGGCTTCATCTTCTCCCCCAACACCATGCAGTCCATCCAGGAGCTCTGCTCAACCCCTTGTGCTAA
TTGA----------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G434900
TGATTCAATTGACTTCTAGGATTCTTGAAGGATTCGGATCCTTGGGATTTTTTTTTCTACATAACATGTTTGATTCGCAG
GATTGGAAAATTCCAAAAGACTGTTTTGCACCCTATTTTGTAGGAAAATTTTCATTCACTCAAATCTCGTTTTACAATTC
TTTTTTTCGTGGCATGTGGCACTCCCAGGTCCCCATTCCTGTGGCTTGACAATCCTAATGAATTCATGTGGCATGTGGCA
CCCCCTAGTCCCAATC-CTTGTGGCTGGCCGGTCCTATTGAATTCAAGTGGGCATGCTA-TTTCATTTCTGTGTTTTTTT
TTCTATTGCTGTGTTTTAAAATTCCTGCAAATCAAGGAGCTCCTAGTGGATTGCAAAATTCCTTTGTTATGAGAATTTTA
TGTGATCAATTTCTTTGGACCAAAGGGATTGAATAGTCTCATCGTAG---AAAAAAATTCCATTCCTACGATTTTTCTCT
ACTTTTCCTA---TGAATCAAATAGGCCGTAAATCTTGGAACACTTTGAAAGCGCTTGTGCATCTGCTGGGAACATGCTT
AATTT-GCAAGTGTCAACCGAGAGGAAAGCAAA-----------------------AGAACACCTAGTACGTA--GAGGA
CCGAGCAT-----------GCATGTTTGGCCACCTCGATCGAACGAACTGTGAAGGCACGTTGATTATACACTATAATAT
CA-----------AATTAATCGATTAGTCAAAACGAAAAATAAGTAACCACGTCCAACCTACCCTCGCTTTCCACCCACA
ATGTCAACAGTCATCTGCCGTACTTGACCGACGACTTTTCGCCTTGCACTCACACTCGCGCCCATCGCATGTCACTTCCT
TCAATTCCTCTCATGCCGGCCGGCCAGGCCAGCCAGTATCTCGTCTCGAC--TCTTCTCCCCCACGCTCTATAAAACCTA
GCGCCCCCTCCCGATCCATTGCCACGCCGTACCAAGCACACAG--------ACAGACAC--------------AGCTAAC
TTCATCGGCGACTAATCAAGCTAAGTAAGCGCGAGCAGCCATGACGGGGATGACTATGGCCGGCGCGTCGTCTCCCTCCA
AGAAAAGCGGCCTCCGGGGGCCGCGGCCGCAGCCGCTGAAGGTGGCGTCGGCGCCGCCGTCCTCCAGGCCGTCGACCAAG
AAGGCCCACGGTGGCGGTGCGCCGGTGATCGTCTACGAGCACACGCCCAAGGTCGTGCACGCGCGGCCGCACGAGTTCAT
GACCGTCGTGCAGCGGCTGACCGGCAAGCCGGCGCCGGCTCCGGCGCTGTTCCCTGGCTACGATGTCCCCGGAGCGCCTA
TGGAGGAGGGAGCTGGAGTAGGAGACCCGCTGCTGCTCACCCTTGGGCACGGGCAGCATCCGCCCATGGCGGCCGGGCAG
CTCATGTCCCCCGGCGGCTTCATCTTCTCCCCCAACACCATGCAGTCCATCCAGGAGCTCTGCTCAACCCCTTGTGCTAA
TTGATCAGCAAAGCAAC-----CATATGCAGTTGATCTGGACATGTTGCTTACT---GCAGGTACCAGTCTAGTACGTAG
AAGATTACACATATATGCATACTCCTAGTACTATATATGTAAATAGTGCAGTACAAATCAGTTAGCCAGGCAGAGTTCGC
GCTGTTCGTGTGAAATTTTCCACGAGGTCGATCGATTGATCGAGGGACTGAAATTTCGCACGCACAGCACAGCAGCTTCT
TGATACAGTTTTTATACAATTCTTATACAGTTACGCACAACATCTGTACATTTTTTTGTTCTTCCACAT-GGGAGCTTCC
AGATACAGAAGCATCATCCTTAGCTTGTGTGTAAGATCCACCGT------------------------------------
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-------------------------------------------TCGATTTTCGCTTGAGTATTCTACTAGGGATAAGAAA
AATATCTGGAGTTTCGAAACAGAATACTGTGTCGCTT-------------------------------------------
---------------TCGTTGTTCCATTTGACCTTTTCCATGCATGTGCTCACGGTTTTGACATCAGAGGGGCCGGCGAC
AATGCATGAACTGCCGGCCCGCGCAAG--TTTTCCACCATTCGCTGTGACGATTTGTACGCATGCGGCGATGTCAATTTG
GTAGATCATGCCCG-------------TACATTTATGAATGCTTGACTTTTTGTACTAGTAG-----------AAGATTT
CAAATTGTAGGGTG----CGGTTGCCTCTTTCATCGGCAACAGCAGCCGCTTTGTGCTACTTTG----------------
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--------------------------------------AACTCGTCTAGTTCGAACGGGATGGTGGATGCATTGCCTGGC
CCTGAAATTCAGTTACAGACAGAAGCTATATATGC------TGCACGTACTGCTGAGTATATAACTGTGCACTGTGCACA
CAAACCTGAGGGCATGCATTCAGG--------------------------------------------------------
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---------AGTCAGAAGCAAC----------------------------TTGATTCAAACAGTCCCATTTTTTTCTTAT
AAAAGGCAATCCTCCTGGCCCTCGAATTATTGGATGCACATAGTCATATTTT----------------------------
----TATTAAAATGAAGTTAATCATCTAGGCCAAACTAATCTGCCGTCTCCTTGGGGCGATGAGGTCCGGGTTTCTCGTT
ATGTG
>chr5A_228
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-------------------------------------------------------------------GTGGCATGTGGCA
CTCCCAAAATCCCAAATCTTGTGGCTTGACAATCCTATTGAATTCAAGTGTGCATGCCATTTTCATTTCTGTGTTTTTTT
--CTATTGCCTTGTTTTGAAATTCCTGCAAATCAAAGAGCTCCTAGTGGATTGCAAAATTCCTTTGTTATGAGAATTTTA
TGTGATCAATTTCTTTGAATCAAAGGGATTGAATAGTCTCGTCATAGGAAAAAAAAAATCCGCTCCTACGATTTTTCTCT
ACTTTTCCTATGATGAACCAAAGAGGCCCTAAATCCTGGAACACCATGAAAGCGCTTGTGCATCTGCTGGGAACATGCTT
AATTT-GCAAGTGTCAACCGAGAGGAAAGCAAAGTGGCACCTTGCGAGGCGACCAAAGAACACCTAGTACGTACGTAGCA
GAGAAGTCTTTAGGACCGAGCATGTTTGGCCACCTCGATCGAACGAACCGTGAAGGCACGTTGATTATACACTATAATAC
---------TATCGATTAATCGATTAGTCAAAACGAAAAATAAGTAACCACTTCCAACCTACCCTCGCTTTCCACCCACA
ATGTCAACAGTCATCTGCCGTACTTGACCGGCGACTTTTCGCCTTGCACTCACACTCGCGCCCATCGCATGCCACTTCCT
TCAATTCCTCTCATGCCGGCCGGCCAGGCCAGCCAGTATCTCGTCTCGACTCTCTTCTCCCCCACGCTCTATAAAACCTA
GCGCCCCCTCCCAATCCATTGCCACGCCGTACCAAGCACACATAGAGAGTTAGAGACACAGCAGGCATCACACAGCTAGC
TTCCTCTGCGACTAATCAAGCTACGTAAGCGCGAGCAGC-ATGACGGCGATGACTATGGCCGGCGCGTCGTCTCCCACCA
AGAAAAGCGGCCTCCGGGGGCCGCGGCCGCAGCCGCTGAAGATGGCGTCGGCGCCGCCGTCCTCCAGGCCGTTGACCAAG
AAGGCCCACGGTGGCGGTGCGCCGGTGATCGTCTACGAGCACACGCCCAAGGTCGTGCACGCGCGGCCGCACGAGTTCAT
GACCGTCGTGCAGCGGCTGACCGGCAAGCCGGCGCCGGCTCCGGCGCTGTTCCCTGGATACGATGTTCCCGTGGCGCCTA
TGGACGAGGGAGCTGGAGTAGGAGACCCGCTGCTGCTCACCCTCGGGCACGGGCAGCATCCGCCCATGGCGGCCGGGCAG
CTCATGTCCCCCGGCGGCTTCATCTTCTCCCCCAACACCATGCAGTCCATTCAGGAGCTCTGCTCAACCCCTTGCGCTAA
TTGATC-----AGCAAG-----CATATGCAGTTGATCTGCAGAGGTTGCTTACTACGGCAGGTACCAGCCTAGAAGATTA
CAC-----------ATGCATACTCCTAGTACTGTATATGTAAATAGG-----ACAAATCAGTTAGCCAGGCAGAGTTCGC
GCTGTTCGTGTGAAATTTTCCACGAGGTCGATCCATCGATCGAGGGACTGAAATTTCGCACGCACAGCACAGCAGCTTCT
TGATACAGTTTTTATACAATTCTTATACAGTTACGCACAACATCTGTACATCGGCTCCTCTGCAGTTGAGTAAAAACTGT
ACGGGTGCTGTAGCTGCCCATATCCACCATCTATTACAATCTGATGGCTCTCCTGTCTCCTTCCTTCTCCTCAGTCTTAG
CAGCAATGGAACAGCGATGACGGCCACCGGAAGCACCCTGGTAAGGAAGTGGCAGTCCACACCGACAGTTTTGTCTGCAC
TGCTGTCGTCCGTAGGCCCTCGGTTCCATCTAGTTCCACGATCACGATGTTTACGAATCCCCGCTCCCAGAGGCGACGCC
CACTTTTGCCTTCCCGGACACCTTGTCTATAAGACCTTCGCCGCCGCCGCCGCTGCCGTGCGCGCTATGCATGCCGACCG
TCTGGAGAGCCTCTCAGCCACCAAGAACGCCGCGTGGTCGTCGTGTACAACAAGGTAAATCCTCCGCAGTGGTCGAGGGA
GCGTGGCTGGGAACGAGTTGTGGCAAGGGGGTGGCGTGGACACCGCCGACCTGATCATGAACATGTGAGGCGCGCTCAAG
GGCGAGTTCATTGACGCACCCGTACAGTTTTGCGGGAAGACCGTGCACTTCCGGCGTCCATCGTCGTCATTGCTCCATTG
CTGCAAAGAGCAAGAAGGAGCAAAGAGCGAGGAGGATGAAGGAGACAGGAAACAGTTGTACAATGCAGGAGACTGTCGGT
GTGGACTGCCACTTCCTTACCAGGGTGCTTCCGGTGACCGTCATCGACGTTCCATTGCTGCTAAGACTGAGGAGAAGGAA
GGAGACAGGAGAGCCATCAGATTGTAATAGATGGTGGATATGGGCAGCTACAGCACCCGTACAGTTTTTACTCAACTGCA
GAGGAGCCGAACCCATCGTTGTTCCATTTGACCTTTTCCATGCATGTGCTCACGGTTT-GACATCAGAACGGCGACA---
-----ATGAACGGCCGGCCCGCGCAAG--TTTTCCGCCATTCGTTGTGACCATTTGTACGCATGCGTCCATGTCAATTAG
GTAGACGACGATCTACTCCTTCTCCAATACATTTATGAATGCTTGACTTTTT--------AG-----------AGGATTT
TACATTCTAGGGCC----CGGTTGCATCTTTCAGCGGCAGCAGCAGCCGATTTGTACTCCCTTCGTAAAGAAATATAAAA
GCATTTAGATCACTAAAGTAGTGATCTAAACGCTTTTATATTAGCCTAAAATCTAAAAAGCGGCCAGCCACAATTTTGAT
AAACCGAGCGGCCGGTTCCTGGCCACTCGCTTTTGTGCGTACGTAGTCCAAGTGTCACTTGGTCTGAATCGTATAGAATT
GTTTTGAATTGTTGCGTTCTCACATAGTGGACCAAGGAATATAATTAGAAGGAAAGATAGCATGTGATGTCCATTCTCTC
TCTTCACATGTGACTGATTTAGCTACCTTTTACAACAATTCAAAAGGTCATAACCTTTTAATCGCGCGTCGGAATTCAGA
TCCGTTTTCACCGTTGGAACCTTCGCAGCGAGATCTTCGAAATTAGATCCCGCATGGGGTATGTTTCGATGAATTTTTAT
GCCAACTTTTGATGCTATATGGTGCAACTTTAGTATTGCGTTGTGCAATTTTTGTACTACATGGTGTAACTTTTTTTAAA
ACAAAATTTTGGAGCTGCATAATTCAACTTCCTATGTGGTTGCAACCTAGCAACCATGACAACCTGATTTGCAACTAGTC
TATTGATCTGGTCAACTACCTAGTAGTAGATATGCAATCACGACAACTTTTGATGTTTAGTTGCACACACATTGATATTT
AGTTGTCAGGACACTAGTTGCTTGTTGGCTTGTAATTTAGTCTAGTTGCACACATGTTGATGTTTAGTTGGCAGAACACT
AGTTGCACACACATTGATATTTAGTTGTCAGGACACTAGTTGCTTGTTGGCTTGTAATTTAGTCTAATTGCACATATATT
GATGTTTAGTTGGCAGGACACTAGTTGCACACGCATATACTCAGTTGTCGCGGCAATATAGTCTAGTTGCACACACATTG
GTGTTTAGTTGGCAGGACTATTTGACACATATATGCTCAGTTGGCCCGGCAATCTAGTCTAGTTGCGCACACATTGATAT
TTAGTTGGCAGGACACTAGTTGCACACATATGCTCAGTTGATGCGGTAATGTAGTCTAGTTGCACACACATTAATATTTA
GTTGGCAGGACTATTGGCACACACATATGCTCAGTTGACGCGGTAATCTAGTCTAGTTGCACACACATTGATGTTTAGTT
GGCAGAAAGACTAGTTCGTCGAAACATCCTCATGCGGGATCTATTTTTGAAGAACACATCGCGATGGTTTCAATGGTGAA
AACGGATCTAAATTTCGACATGTGGTTTAGAAGATATGTCTTTTATAATTTTGAAAACCAAAAAATAATGCACAAGGGAC
AGACATGAGGAACATTAATTCAATAACATGCAGGTATCCATCACGTAAAAAGATACTACATATGATAGAAACTAGACGTG
TTGCCTTTTTCTGGACCAGGCGACAGGCACTTACCCTTTTTTAGCCGGCCGCTCGCGAGCGCTAACGAGCCGCCGGCCGC
CAGCTAGACGCGCCTTTGTATACTACGCAGTTTGAATTAATTCTGCTGGTTCGAACGGGATGTTGGATGCCTTGCTTGGC
CCTGAAATTCAGTTACAGACAGAAGCTGCTATATAGTATTTTGCACGTACTGCTGAGTATATATTTATCTA---T--ACA
CAAATCTAAGGGCACGCATTCAGG--------------------------------------------------------
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---------TGTGAGAGGCAAC----------------------------------------------------------
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>chr5B_402
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---GACCAATTTCTATGAATCAAAGGGATTGAATAGTCTCATCAAAG--AAAAAAAAATCCATTCCTATGATTTTTCTCT
ACTTTTCCT---ATGAATCAAAGATGCCCTAAATCTTGGAACACTTTGAAAGCGCCTGTGCATCTGCTCGGAACATGCTT
AATTCGGCAAATGTCAACCAAAAGGAAAGCAAAGTGGCACCTTGCGAGCCGACCAAAGAACACCTAGTACGTA--TAGCA
GAGAAGTCTTTAGGACCGAGCATGTTTTGCCACCTCGATCGAACGAACCGTGAAGGCACGTTGATTATACACTACTATAA
TACTACGAGTATCAATTAATCGATTAGTCAAAACGAAAAGTAAGTAACCACTTCCAACCTACCCTCGCTTTCCACCCACA
ATGTCAACAGTCATCTGCCGTACTTGACCGGCGACTTTTCGCCTTGCACTCACACTCGCGCCCATCGCATGTCACTTCCT
TCAATTCCTCTCATGCCGGCCGGCCAGGCCAGCCAGTATCTCGTCTCGACTCTCTTCTCCCCCACGCTCTATAAAACCTA
GCGCCCCCGGGCGATCCATTGCCACGCCGTGCCGAGCACACAC--------AGAGACACAGCAGGCATCACACAGCTAGC
TTCATCTGCGACTAATCAAGCTACGTAAGCGCGAGCAGCCATGACGGCGATGACTATGGCCGGCGCATCGTCTCCCTCCA
AGAAAAGCGGCCTCCGGGGGCCGCGGCCGCAGCCGCTGAAGGTGGCGTCGGCGCCGCCGTCCTCCAGGCCGTCGACCAAG
AAGGCCCACAGCGGCGGCGCGCCGGTGATCGTCTACGAGCACACGCCCAAGGTCGTGCACGCGCGGCCGCACGAGTTCAT
GACCGTCGTGCAGCGGCTGACCGGCAAGCCGGCGCCGGCTCCAGCGCTGTTCCCTGGCTACGATGTCCCCGTAGCGCCTA
CGGACGAGGGAGCTGGAGTAGGAGACCCGCTGTTGCTCACCCTCGGGCACGGGCAGCATCCGCCCATGGCGGCCGGGCAG
CTCATGTCCCCCGGCGGCTTCATCTTCTCCCCCAACACCATGCAGTCCATCCAGGAGCTTTGCTCAACCCCTTGTGCTAA
TTGATC-----AGCAAGGCAACCATATGCAGTTGATCTGGACATGTTGCTT------GCAGGTACCAGTCTAGTAGAAGA
T------CACATATATGCGTACTCCTAGTACTATATATGTAAATAGTACAGTACAAATCAGTTAGCCAGACAGAGTTCGC
GCTGTTCGTGTGAAATTTTCCACGAGGTCGATCCATCGATCGAGGGACTGAAATTTCGCACGCACAGCACAGCAGCTTCT
TGATACAGTTTTCATACAATTCTTGTACAGTTACGCACAACATCTGTACATTT--TTGTTTTTCCATATGGGGAGCTTCC
TGATGCAAAAGCATCCTTAGTC----GTGTGTAAGATACACCGT------------------------------------
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-------------------------------------------CCGATTTTCGCTTGAGTATTCTACTAGGGATAAGAAA
AATATCCGGAGTTTCGAAACAGAATACTGTGTCGCTT-------------------------------------------
---------------TCGTTGTTCCATGTGACCTTTTCCATGCATGTGCTCACGGTTT-GACATCAGAGCGGCGACA---
-----ATGAACTGCCGGCCCGCGCAAGTTTTTTCCACCATTCGCTGTGACGATTTGTACGCATGCGTCCATGTCGATTTG
GTAGACCAACCCCG-------------TACATTTATGAATGCCTGACTTTTTGTACTCGCCATGCAAAAAAAAAAGATTT
CACATTCTAGGGTGCGCGCGGTTGCCTCTGTCATCGGCAACAGCAGCTGCTTTGCGCTACTTTGAACATTTCTATGTT--
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------------------------------------------------GTTCGGACGGGATGGTGGATGCATTGCCTGGC
CCTGAAATTCAGTTACAGACAGATGCTATATATGC------TGCACGTACTGCTGAGTATATATAACTGTGTACT--ACA
CAAATCTGAGGGCATGCATTCGGGAGCAGACCTGGCCAAACGGGCCGGCCCGGCATGGCACGGCACGGCCCGTGCTAATC
GTGCCTGGCCCGGCACGGCCCGCCATGGCACGTTTAATAGCCGGGCCGTGCCGTGCCGGCCCACGGGCGCTGCTCCTTGG
CCCAGGCACGGCCTGATTAGTAAACGGGCCGGCCCGATGGCCCGTTTAGCACGCTGGGCTGCACATTTTCAGCCTGCTGG
GCTGGTTTTTAGGCCTATTGGGCTGTATTTTAGGTATATATATATATCTAAAAAATATATAAAAAAATTAAACGGGCCGT
GCCGTGCCGGCCCGCGTGCCCAGGCTCCAGGCCCAGGCACGGCCCAAGGCGTGCCGCATGCCGGGCACGGCCCGTTTAGC
CCGTGCCGTGCCTGGCCCATGGCGGGCCGTGCCGGCGTGCTCGCGGGCCGGCCTGTTTAGCCCGGCCCGTTTGGCCAGCT
ATATTCGGGAGTCAGAAGCAACAGCACTGCAGCCCACAAGAGGAAACAACTTGATTCAAACAATCCCATTTTTTTCCTAT
AAAAGGCAATCCTCCTGGCCCTAGAATTATTGGATGCGCATAGCCATATTTTTATTAAAATGACACCCGCAAAAAAAATA
TTTCTATTAAAATGAAGTTAATCATCTAGGCCAAACTAATATGCCGTCTCCTTGGGGCGATGAGGTTCGGGTTTCTCGTT
AT---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
-S---S-SSS--S-SS----------S-S-SS------------------S------S----------------------
SS-------SS------S-----------------S--------------------------------------------
-----------------S-S-----------------------S-------------S----------------------
----------------------S-----S---------------------------------------------------
---------------------------------------------------------------------------S--S-
SS--SSSS----------------------------------------S------------------------------S
S--------------------------------------------------S----------------------------
------------------------------S-------------------------------------------------
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------------------------------------------S---------S-------------------------S-
------S----------------S-----------------------S--------------------------------
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-----------------------------------------------------------------------S--------
----S--------------------------------------S------------------------------------
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------SSSSS-----S----------------------------------------------------------SS-SS
S-SSSSS----------------------------------------S--------------------------------
---------------------------------S--S-------------------------------------------
-----------------------------------------------------SS-----S-----S-------------
----S--S-------S---S--S-SS-----------S------------------------------------------
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------S-------------------------------------------------------------------------
----------------------------------------------------------S----------S---SSSSSSS
SSSSS-------------------------------------------------------------S-S-----------
-----S--S------------------------------------------------S-S--------------------
--S---S-------------------------------------------------------------------------
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----------------------------------------S--SS--S--------------------------------
---------------------------------------------------------------SS-S--S-SSS-SS---
----S---------------------------------------------------------------------------
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--------------------------------------------------------------S-------------S---
----------------------S--------------S-----S------------------------------------
----------------------------------------S-------------------------S-------------
--SSS
>forward_267
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-------AGTCCCAATCCTTGTGGCTG-----------------------------------------------------
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>reverse_1821
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------------------------------------------------------------CTTCCACATGGGAGCTTCCA
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