>input_sequence_80164
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------------ATGGATGAGTTCACTTTCCCCACTGTCCCAGGCGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTG
GTTCGTCGCCGCCGTCGCGGAGGAGGAGGAGGAGGA------------CGGCGGCGGCGCGCCGTGGGGCCGCGACGAGA
AGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTCGCGCGCGCGCCGCCGGTGTGCCCTCTCAGCCCCGTGAGCAAG
GGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCGAGTGGTTTTACAGCGACGGCGACGGCGAGGGCGATGACGG
CGGTGTCATCGAGGCGAGGAAGCGTAGCGGCAGTGGCAGGCACATGGTGGTCCGGCGCCGGAGATGGAGCCTGCTGCTGA
TGCTCAGGCTGCTCAAGAAGCTCTTCCTGGTCAAGAAGTCCAGGAATGGGAGAACCGCGCCAATCTGA------------
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>chr4D_1_TraesCS4D01G098000
CTATTCATCTTCAATCATGGCCATACAAAGAACATCAGAGATAATAAAAATTACAATCAGGTCCGTGGACCACCTAGTGA
CGACTACTAGCACTAGAGCAAGCTGAACGCGTGCCGCCGTCATCACCCCTCCCTCGTCGGAGCCGGGCAAACCTTATTGT
AGTACACAGTTGAAAAGTTGTGCTAAGCCCC-ATAGGACCAGCACACCAGAGCAGCAACCATCACCGAAGAAAGTCATAG
ACCGGAAGGATCAAATCTGTAAACACGCAAACGAAAGCGAACAAAGACCGGATCCAAACAGATCCACCAAAGATCGGCAC
CGACCGAATCCTGCAAGATCGAAG-GAGACACACCTCCACACGCCCTCCGACGATGCTAGACGCACCATCGAGACAGTGC
TAGAACGTGGGAGATGTTATTCCCACCGAGAGACCCATGTTTTCTTTTCTTTATGTCTGTATAATTCCTTTGCTTTTCCT
GCGTGAAATTCAAACGATGGTTTTAAAGTTTTCCCGTGGTTTTGGTTCCCATAGAAATCTAGAACACATGACATCTCAAT
TACAGTATTCCAAATTTTAAGTCCTGTGTTGGAGAAGGGGCCTAAAAGCCCATCAGACAT--------------GGCAAT
TTTCGTCAGAGGAAGCGCAAGCGAGCTGGATCCCCTGGAACGGAAGCAAGTTACCCGTACCCGGCACATCATCACCGCAT
CATCACTTGCTTAGCCATCCATCTCTTGAAGCTTAGTTCTGGCCAACCACAGCACCCAGGT-------------------
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------------------------------------------------------------------------ACCATGCC
TTTTCCCCGCACAGTTCAGTTTAGTACTAGAAAGATGAGGATGTTCCACCGTCCATGAAGGTGAAATTTATGAGACCTAC
ATTACCACCACTGCTGG------TACACGTACCTCATAGTACTGTACTAGACTACCACCTCCATATAAATATGAATCTAG
TGGTCGACAGATACATACTACA----CACTACACCATAGGGATTTGCAACTTTGCAAGCAAGCAAG--------------
-CTAGCTCCACCATGGATGAGTTCACTTTCCCCACTGTCCCAGGCGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTG
GTTCGTCGCCGCCGTCGCGGAGGAGGAGGAGGAGGA------------CGGCGGCGGCGCGCCGTGGGGCCGCGACGAGA
AGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTCGCGCGCGCGCCGCCGGTGTGCCCTCTCAGCCCCGTGAGCAAG
GGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCGAGTGGTTTTACAGCGACGGCGACGGCGAGGGCGATGACGG
CGGTGTCATCGAGGCGAGGAAGCGTAGCGGCAGTGGCAGGCACATGGTGGTCCGGCGCCGGAGATGGAGCCTGCTGCTGA
TGCTCAGGCTGCTCAAGAAGCTCTTCCTGGTCAAGAAGTCCAGGAATGGGAGAACCGCGCCAATCTGATGAAATCAGATG
AGCTGCAGAAGTTAATGCAGAAATTATTGGTGCG--------------ACTCAGTAGTGTGTGCATAGTTGATA---CGT
ATATCATATACTCTACATGTGTAATTTTGCTTTTTCTCGCAAGACTTCTTTTTGGCTGAAGAGTGTACTCTTCT---TCA
TCTTTCTCTTGTTTTGATCAACTTGTTCTTCTTCTTGGCATCAGTATATTCCCAACTACAAACAATTGTTTTTCCCTCTG
AATCATCTAATTTTTGGTTTTGTATGGAATGCATGACAAGTTTATCAACAACACTAGGATGAGTGAGATCACAATTCCGT
ATGGACATTGCTCTTCCATT-ATCTGATCTTTCTTTGTGACTGAAGCAAGTTGTGTTGGCAATTGTGTTGTTAGCATTGG
GATGGGATGAGCATGGCAAAGGTTGTCTGCCACCAACCTCGTAGATGCAGATGCAGGTGCATCGCCATCAGGAACCCACC
TAAATCAAGGAGCCATTCAATTGCGGCACCGTCACCAACACCTCCAAGCAGCACGTGAAGCAGAAAACCAGACGCCAAAG
TCTT----CAGCTTCATAAATGTTGCACTTAACAACACACTGCAACAATCACTT--CCTCTCACATCAGGGTCACCATTC
TGCCAATTAGGGATCT---TATTAATCCCCTGCCTGATGATGCCCGGGAGAGGCCTAATGATCTTGCTGAGCATGCTACT
AATCCAATCACAATAACCCCACCTAACATCTTCAGATGCCACCTATTGTCCTGATCA------ATTAACCTGCTGGTGTT
ACTTTACTAATACTCCTACTACAGT--ACTACTGGAGTACAAAGAAGTCAATCATAGTACAGAACTCCCTTAGAAAGCCT
CTTTGATCAAGACCTTAGAAGTGAGAGACTTTTTCGGACCACGCGAGGTGCGGACACGTGTTCTGTCACGATCTGGCCTA
CGCATGCAGTGCTGGTCGTCTGT------AACCGACCAAGTGAAGCAACCAGCCGGTTGGTTTCCAGCAACA
>chr4B_1
CTATTCTTCTTCAATCATGTCCGTACAAAGAAAACTAGAGATAATAAAAATTACAATCAAGTCCGTGGACCACCTAGTGA
CGACTACGAGCACTAGAGCAAGCCGAAGGCGTGCCGTTGTCATCACCCCTCCCTCGCCGGAGCCGGGCAAACCTTATTGT
AGTAGACAGTCGAAAAGTCGTGCTAAGACCCCATAGGATCAGCACACCAGAGCAGCAGCCATCGCCGAAGAAAGTTGTAG
ATTGGAAGGACCAAACTTGTAAACACCCAAATGAAGACGAACAAAGACTGGATCCAAACAGATCCACCAAAGACTAGCAC
CGACCGAACCCCGCGAGATCCGACAGAGACACACCTCCACACGCCCTGCGATGATGCTAGGCGCACCATCGAGACATGGA
TAGAATGTGGGAGACGTTATTCCTACCGAGAGACCCATGTTTTCTTTTCTTTATGTCTATATAATTCCTTTGCTTTTCCT
GCGTGAAATTCAAACGATGGTTTTAAAGTTTTCCCGTGGTTTTGGTTCCCATAGAAATCTAGAACACATGACATCTCAAT
TACAGTATTCCAAATTTTGAGTCCTGTGTTGGAGAAGGGGCCTAAAAGCCCAGCTCACTTGCTTCCGTTCGAGGGGCAAT
ATTCGTCAGGGGAAGCGCAAGCGAGCTGGATCCCCTGGAACGGAAGCAAGTTACCCTTACCCGGCACATCATCACCGCAT
CATCACTTGCTTAGCCGTCCATCTGTTCAAGCTTAGTTCTGGCCAACCACAGCAGACAGCACCCAA--------------
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----------------------------------------------------------------------GCACCATGCC
TTTTCCCGGCACAGTTCAGTTTAGTACTAGAAAGATGAGGATGTTCCACCGGCCATGAAGGTGAAATTGATGAAACCTCC
ATTACCACTACCGCTCG------TACACGTACCTCATAGTACCATACTCC---ACCACCTCCATATATAAATGAATCGAG
TGGTCGACAGATACATACACGCTAGCCACTACACCATATGGATTTGCAACTTTGCAAGCAAGCAAGCT---AGCTATCTA
GCTAGCTCCACCATGGATGAGTTCACTTTCCCCACTGTCCCGGGAGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTG
GTTCGTCGCCGCCGTCGCAGAGGAGGAGGAGGGGGACGACGGCAGCGGCGGCGGCGGCGCGCCGTGGGGTCGCGACGAGA
AGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTGGCGCGCGCGCCGCCGGTGTGCCCTCTGAGCCCCGTGAGCAAG
GGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCGAGTGGTTCTACAGCGACGGCGACGGCGACGGCGATGACGG
TGGTGTCATCGAGGCGAGGAAGCGTACTGGCAGTGGCAGGCACATGGTGGTCCGGCGCCGGAGGTGGAGCCTGCTGCTGA
TGCTCAGGTTGCTCAAGAAGCTCTTCCTGGTGAAGAAGTCCAGGAACGGGAGAACCGCGCCAATCTGATCACCTCAGATG
AGCTCCAGAAGTCAATGCAGAAATTATTGGTGCGGTGCATCAGTCAGTACTCAGTAGTGTGTGCATAGTTGATA---CGT
ATATCATATACTCTACATGTGTAATTTTGCTTTTTCTCACAAGACTTATTTTTGGCTGAAGAGTGTATTCTTCT---TCA
TCTTTCTCTTGTTTTGATCAACTTGTTCTTCTTCTTGGCATCAGTATATTCCCAACTACAAACAATTGTGTTTCCCTCAG
AATCATCTAAATTTTGGTTTCGGATCAAGTGCATTACATGTTTATCAACAGCACTAGGATGACTGAGATCACAATTCCGT
ATGGACATTGCTCTTCCATT-ATCTAATCGTTCTTTGTGACTGAAGCAAGTTGTGTTGGCAATTGTGTTGTTAGCATTGG
GATGGGATGAACATGGCAAAGGTTGTCTGCCACCAACCTCGTAGATGCAG------GTGCATCGCCGTCAGGAACCCACC
TAAATCAAGGAGCCATTCAATTGCGGCACCGTCACCAACATCTCCACGCAGCACGTGAAGCAGAAAACCAGACGCCTCCC
AAAGTCTCCAGCTTCATAAATGTTGCACTTAACAACACACTGCAACAA-CACCT--CCTCTCACATCACGGTCACCGTTC
TGCCAATTAGGGATCT---TACTAATCCCATGCCTGATGATGC----------CCTAATGATCTTGCTCTGCATGCTACT
GGCCCAATCACAATAACCCCACCTAACATCTTCAGATGCTACCTATTGTCCCGATCAATTAAC-----------------
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>chr4A_647
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----------------------GAGCTTGATCCCCTGGAACGGAAGCAAGTTACCCGTACCTGGCACATCATCACCGCAT
CATCACTTGCTTAGCCGTCCATCTCTTGAAGCTTAGCTCTGGCCAACCACAGCAGATAGCACCTATGCACCAGAGAGGGC
ACCATCTGAACCCATGGGCATATGCACCCACTTTTCATAAAATGCATTTTAAGCACGTTTTTAAATGTTAAAGAAATCAA
AAGAAAATATCACGCATACATGTTCGCAAACGTGTGTACGCGGCACAAAGTTTTATGAAAAAATGTCTTTTTGTTTTGCC
TTCGCAAAAAAGACAAATTTCAGTGCTTCTAAATAGTGTTTCACGACATAATTTTTTGCCTTTTTTGTACAGGCCACACA
AAAAGTTATTTTTCCATGAAACTTTATGCACGCACATAGAACATGAAGACGTACGCGTGCAATTTTTTTTCCAGATTTTT
TTAGCATTTAGAAATGTGTTTTTTAAAATGGGTTCATATGTACCCGGATTCATTCATGCACTTCTCCTATGCACCATGCC
TTTTCCCGGCACAGTTCAGTTTAGTACTGC-AAGATGAGGATGTTCCACCGTCCATGAAGGTGAAATTGATGGAACCTCC
ATTACCACTACCGCTCGCGATCGTACACGTACCTCATAGTACCAGACTA------CACCTCCATATATAAATGAATCGAG
CGGTCGACAGATACATACACGCTAGCCACTACACCATAGGGATTTGCAACTTTGCAAGCAAGCAAGAAAGCAGCTAGCTA
GCGAGCTCGACCATGGATGAGTTCACTTTCCCCACTGTCCCGGGCGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTG
GTTCGTCGCCGCCGTCGCGGAGGAGGAGGACGA------------CGGCAGCAGCGGCTCGCCGAGGGGCCGCGACGAGA
GGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTCGCGCGCGCGCCGCCGGTGTGCCCTCTCAGCCCCGTGAGCAAG
GGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCGAGTGGTTCTACAGCGACGGCGACGGCGAGGGCGACGACGG
CGGTGTGGTCGAGGCGAGGAAGCGTAGTGGCAGTGGCAGGCACATGGTGGTCCGGCGCCGGAGGTGGAGCCTGCTGCTGA
TGTTCAGGCTGCTCAAGAAGCTCTTCCTGGTCAAGAAATCCAGGAGCGGAAGAACCGCGTCAATCTGATCACACCAGATG
AGCTCCAGAAGTCAATGCAGAAATTATTGGTGCGGTGCATCAGTCACTACTCAGTAGTGTGTGCATAGTTGATACTACGT
ATATCATATACTCTACATGTGTAATTTTGCTTTTTCTCACAAGACTTCTTTTTGGCTGAAGAGTGTATTCCTCTTCATCA
TCTTTCTCTTGTTTTGATCAACTTGTTCTTCTT---GGCATCAGTATATTCCCAACTACAAACAATAGTTTTTCCGTCAG
AATCATCTAAATTTTGGCTTTGGATCAAGTGCATTACATGTTTATCAACAGCACTAGGATGACTGAGATCACAATTCCT-
-TGGACATTGCTCTTCGGTTAATCTAATCTTTCTTTGTGACTGAAGCAAGTTGTGTTGGCAATTGTGTTGTTGGCATTGG
GATGGGATGAGCATGGCAAAGGTTGTCTGTCACCAACCTCGTAGATGCAG------GTGCATCGCCATCAGGAACCTACC
TAAATCAAGGAGCCATTCAATTGCGGCACCGTCACCAACATCTCCACACAGCACGTGAAGCAGAAAACCAGACGCCTCCC
AAAGTCTCCAGCTTCATAAATGTCGCACTTAACAACACACTGCAACAG-CACACTCCCTCTCACATCAGGGTCACCATTC
TGCCAATTAGGGATCTTATTATTGATCCCATGCCTGATGATGC----------CCTAATGATCTTGCTCTGCATGCTGCT
GGCCTAATCACAATAACCCCACCTAACATCTTCAGATGCTACCTATTGTCCTGATCAAGTAACATTAACCTGCTGGTGTT
ACTTTACTAATACTCCTACTATAGTACACTACTGGAGTACAAAGAAGTCAATCATAGTACATAACTCCCTTAGAAAGTCA
CTTTGATCAAGACCTTACAAGT--GAGACTTTTCTGGGCCACGCGAGGTGCCGACACATGTTCGGTCACGATCTGGCCTA
CTCATGCAGTGTTGGTTGTCTGTGACTGTAACCGACCAAGTGAAGCAACCAGCCGGTTGGTTCCCAGCAACA
>SNPs
------S------------S--S---------S-SS-----------------------S--------------------
-------S---------------S---S--------SS------------------S-----------------------
----S-----S-------S--------S----------S------------------S-----S-----------SS---
-SS-------S----SS---------S----S---SS-----------S------------------------SSS----
--------S--S--S-----SS-S-----------------------S---S--------S---------------SS-S
-----S--------S--------S----------------------------------S---------------------
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------------------S---------------------------------S-SS--S---------------------
S--------S----------------------------------------------------------------------
----------------S-------------------------------------SS---SS-------------------
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-------S------------------------------------------------------------S----S----S-
--------S--S---S--------------------------SS-----SSSS--------------S-S-------S--
------------------SSSS----------------------------------------------------------
-----------------------------------------S--------------------------------------
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-----------------------------------------------S--------------------------------
---------------------------S-----------------------------------S----------------
----------------------------------------------S----------------------S-S--------
----S-------S-------------------------------------------------------------------
--------------------------------------S----------------------------S------------
------------------------------------------------------------------------------S-
----------S-----------S--SS-S-----S---S-----------S-----------S-----------------
-------------------------S------------------------------------------------------
--------------------------------------------------SSSSSS------------------------
----------------------------------------S-----S-----------------------------SSSS
SSSS--------------------------------------------S---S---------------------------
-----------------------------S-------------SSSSSSSSSS---------------SS----------
SSS------------------------------------S----------------------------------------
---------------------S---------------------------------------S---------------S-S
-----------------S----SS---------SS--S-------------S-----S-----S----------------
-S---------S----S---------------------------------------------S---------
>forward_1208
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--------------------------------------------------------------------AGGTACCATGCC
TTTTCCCC------------------------------------------------------------------------
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>reverse_2604
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-------------------------------------------CCGGGAGAGGCCTAATGATC-----------------
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