>input_sequence_80120
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCCATGCCAGCTTCCAGATACCAGCACAGAAGAAGCTCAT
ACACAAAATCCTCTCTTC---TTCCTCCTCGTTGGCTCGTCTCTGCAGCGCCATCATTCCCCAAGATGTTGATGCTAAGG
GCAGCGCCGATGTCCTACGCCAAGGTGGACAAGGTGGACGCCGAGGAGGCGCGGCACTGGAAGGCGCAGTTCCTGATCCA
CAAGGCGCTCGAGACGGGGCCGACTAGGCGGCCGCCGGCGGCGGCGCCATTGGCGAGGGCTGGCGGCTGCAGGGTCGTCA
GGGCGGTGAGGATCGGCATCCGGCTCAAGAGGCTCAGGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTC
CTCAAGCACCTCAAGAATCTCAGGAGGCTCGGGTCTCCTCGTTCTTGATCCCCTCGATCTCCTCCTTCTGAAAGAGTTTT
TTAT--GTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>chr2A_1_TraesCS2A01G222200
ATTGAAACCATGAGTTGACTTTCATTTTTTGAAAGTGATGCCTAGAGATGTGGAAGTTTTGGGTTGTAGACCGAGTTTCT
TTACCAAGGGGTCTGAATTATCATTATCGAATATACCACTCTTTTATTGGATGTTAAAATTTTGATTTTGAATTTTTAAA
AGTTGACCAAAGAATGGGAATCACATCTATGCAACTCTAGTATATTGATCCACTAGGAGAGCATCGTGCATACTTTGGAG
GGGGTCTTGGGTTTGAATACCTTCCATGAAACAAATGCACTAGGAATGGAGCACTCCGGCTAGAGGGTAGGGGGCACGAT
TTTCGTGTTTGTTAGGACGCGATCTAGGCCCGGTGCCCACACATGTGGTTGCCTTTTCTTGTTCACCTTTCAATTTTTCT
CTCCTAGGTAGGGTCCACACCCACATGGACTTTGGTTTTCCTCGGTTTTTCCCATGAATCTCTAAAATTCTTGAAAGTTT
AAAATTTTCGAAGGTCGACATTTTTTGAAAGTTTAAAGTTCAAATTTCAACAGATTAACTATCAAAAAAGTTGAAATTTC
CAAGTTTCCAGAAATCTGAAAAGTTTCAATTTCTGAAAGCTCGGGCAAGAATTTCCAAAGTTCCGTAATGTAATTTCAGA
AAAGAAAGTTTGAATTTCCATTTGGGTTATCGAAATTGACCACACCGTTGCTGCCTGGGGGGCGCCCGCTAGATAGCCCT
ACCGTAGTGTAACTAGCAAATATGCCATGCCATCCTCCCGGAGCTACATTTTTTTTGAGGGACCCAGACCTACATTTTTA
TTTGGTTCTTTCATGAGCTTGGAAATAACAAGTAGATAAATAGTCATAAACATTGACACGGCCTGCCCAACTAATACTCT
GGTGATCTCATCAATAATGCCATTGTAAACATAAAGCCAGATGTAGAACCGGCCTGCTTGCCCCGCCTGAGGCCTGCGCT
GCCGTCGCCTGCCTATATAACAGAGGACAGGCGCACACGTCCCATGCCAGCTTCCAGATACCAGCACAGAAGAAGCTCAT
ACACAAAATCCTCTCTTC---TTCCTCCTCGTTGGCTCGTCTCTGCAGCGCCATCATTCCCCAAGATGTTGATGCTAAGG
GCAGCGCCGATGTCCTACGCCAAGGTGGACAAGGTGGACGCCGAGGAGGCGCGGCACTGGAAGGCGCAGTTCCTGATCCA
CAAGGCGCTCGAGACGGGGCCGACTAGGCGGCCGCCGGCGGCGGCGCCATTGGCGAGGGCTGGCGGCTGCAGGGTCGTCA
GGGCGGTGAGGATCGGCATCCGGCTCAAGAGGCTCAGGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTC
CTCAAGCACCTCAAGAATCTCAGGAGGCTCGGGTCTCCTCGTTCTTGATCCCCTCGATCTCCTCCTTCTGAAAGAGTTTT
TTAT--GTGTCAGGGAAACTAAGCTGCCTTCTACTTCTATCATACGCAATAGCTAACAACAACTTCTGCCCTTGATATGC
CGAGAAGATTTGGGCGCGCGCGCGTGTGTGTGGATGCATAGTATAGTACAGTATGTAATCTGTAAATGGAGCAGATCAGC
AATGTTGGCTCCTGTTTCAGGCTTCCTTTTTCTCTGGGATCCTATCCTATCTTGTTGGTCACTGACAGCTGATGAAACTC
TTCAGTTATGTATATGCAGCATATCCGTGTTGAATTGTTGA----GTCATTGAGATGCTAAATCCACTGCTGCACCGATG
AGTTTTGGATCTTATGTTTCGAGAAGTAAGTCCGGAATCCTTTTAATT-TTTTTTCCTTTTGTTTTTGTTCTGCAAGATC
TCTAGAGAAAACGGCTACAGCAATCCACGATTAGCTTACCTACCACCTGCTGGGTAGGAGGACATGTGTTTTGCGTCAGC
CCGGCTACAGCAAAACGAAAAGAGAGTGACGAAAGGTCATGCATTGTTAATGGTGGATGAGAAAGTAGATTTGGG-----
ATCTAACTCATGCTGCCAGTTTGTCCTTA-GTCGAGTATGAAGTTGAACTGCATGTGCAGGGGTGCTTGCGTCCCTATTC
GCGAAAATTCCTTTACAAAACCGCGATACACTGCTTTACAAACATTAAAATTTGGTTTGGAAAACAACAACTGGAGCTTC
GTTTCCTTTCCTTTGCGGTTAGCTAATAGGTAGCGAAAAATGAGTTGCAAAAAACCAAAGACGATCAAGATTTTTCTG--
ATCTGTAAATCGACGGGGCAAGCAAAATGGACTAACAAACACTGCATGAAAAGCTGTCATCGATACTCTGAGGTTGAAAG
AAACGCTTGAAAATAAGCTGAACCTACCAAGTAAACGAGCGCTTGAATTAGAATCGTAAGTCGTAGTCGAATACATTGCT
GACATATGGCATCAAGCTGCTAATTTTACTCACAGACATGT-----CATCCTCACGCAGAATGGATCA
>chr2B_785
CAGGCCTGCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTTA
TTTGGTTCTTTCTTGAGCTTGGAAATGATAAGTAGATAAATAGTCATAAACATT-ACACGGCCTGCCCAACTAATACTCT
GGTGATCTCATCAATAATGCCATTGAAAACATAGAGCCAGATGTAGAACCGGCCTGCTTGCACCGCCTGAGGCCTGCGCT
GCCGTCGCCTGCCTATATAACAGAGGACAGGCGCACACGTCCCATGCCAGCTTCCAGATACCAACACAGAAGAAGCTCAT
ACACAAAATCCTCTCTTC---TTCCTC---GTTGGCTCGTCGCTGCAGCGCCATCATTCCCCAAGATGCTGATGCTAAGG
GCAGCGCCGATGTCCTACGCGAAGGTGGACAAGGTGGACGCCGAAGAGGCGCGACACTGGAAGGCGCAGTTCCTGATCCA
CAAGGCGCTCGAGACGGGGCCGACAAGGCGGCCGCCGCCGCCGGCGGCATTTGCGAAGGCTGGCGGGTGCAGGGTCGTCA
GGGCGGTGAGGATCGGCATCCGGCTCAAGAGGCTCAGGATCGCCGTCCGGAGCTTCAGGCTCCGCGTCTGCCGGAGCGTC
CTCAAGCACCTCAGAAATCTCAGGAGGCTCGGGTCTCCCCGTTCTTGATCCTCTCGATCTCCTCCTTCTGAAAGAGTTTT
TTTTACGTATCAGGGAAACTAATCTGCCTTCTACTTGTATCAT-CGCAATAGCTAACAACAACTTCTGCCCTTGATATGC
CGAGAAGATTTGG--GCGCGCGCGTGTGTGTGGATGCATAGTAT-----AGTATGTAATCTGTAAATGGAGCAGATCAGC
AATGTTTGCTCCTGTTTCAGGCTTCCTTTTTCTCTGGGATCCTATCCTATCTTGTTGCTCACTGACAGCTGATGAAACTC
TGCAGTTATGTATATGCAGCATATCCTTGTTGAATTGTTGATTGAGTCATTGAGATGCTAAATCCTTTGCTGCACCGATG
AGTTTTGGATCTAATGTTTCGAGAATTAAGTCAGAAATCCTTTTATTTATTTTTTCCTTTTGCTTTTGTTCTTCAAGATC
TCTAGAGAAAACGGCTACAGCAATCCACGATTAGCTTACCTACCACCTGCTGGGTAGGAGGACATGTGTTTTGCGTCAGC
CCGGCTACAGCAAAACGAAAAGAGAGTGACGAAAGGTCATGCATTGTTAATGGTGGATGAGAAAGTAGATTTGGG-----
ATCTAACTCATGCTGCCAGTCTGTCCTTTGGTCCAGTATGAAGTTGAACTGCATGTGCAGGGGAGCTTGCGCCCCTATTC
GCGAAAATTCCTTTACAAAACCGCGATACACTGCTTTACAAACATTAAAATCTGGTTTGGAAAACAACAGCTGGAGCTTC
GTTTCCTTTCCTTTGCGGTTAGCTGATAGCTAGTGAAAAATGATTTGCAAAAAACCAAAGTCGGCCAAGATTTTTCTTTA
ATCTGTGAATCGACGGGGCAAGCAAAATGGACTAACAAACACTGCATGAAAAACTGTCATAGATACTCGGAGGTCGAAAG
AAACGCTTGAAAATGAGCAGAACATACCAAGTAAACGGGCGCTTGATTTAGAATCATAAGTCGTAGTTGAATACATTGTT
GACATATGGCATCAAGCTGCTAATTTTACTCACAGACATGTCCATCCATCCTCATGCAGAATTGATCA
>chr2D_830
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AAGTAAATAAATAGTCATAAACATTTACACGGCCTGCCCAACTTATTA---
-GTGATCTCATCAATAATGCCATTGAAAACATAGAGCCAGATGTAGAACCGGCCTGC-----CCGCCTGAGGCT--CGCT
GCCGTCGCCTGCCTATATAACACAAGACAGGCGCACACGTCCCTTGCCAGCTTCCAGATACCAACACAGAAGAAGCTCAT
ACACAAAATCCTCTCTTCTTCTTCCTC---GTTGGCTCGTCGCTGCAGCGCCATCATTCCCCAAGATGCTGATGCTAAGG
GCAGCGCCGATGTCCTACGCGAAGGTGGACAAGGTGGACGCCGAAGAGGCGCGGCACTGGAAGGCGCAGTTCCTGATCCA
CAAGGCGCTCGAGACGGGGCCGACTAGGCGGCCGCCGGCGGCGGCGGAATTTGCGAGGGCTGGCGGGTGCAGGGTTGTCA
GGGCGGTGAGGATCGGCATCCGGCTCAAGAGGCTCAGGATCGCCGTCCGGAGCTTCAGGCTGCGCGTCTGCCGGAGCGTC
CTCAAGCACCTCAAGAATCTCCGGAGGCTCGGGTCTCCTCGTTCTTGATCCCCTCGATCTCCTCCTTCTGAAAGAGTTTT
TTAT--GTGTCAGGGAGACTAAGCTGCCTTCTATTTATATCAT-CGCAATAGCTAACAACAACTTCTGCCCTTGATATGC
CGAGAAGATTTGGGCGCGCGCGTGCGTTTGTGGATGCATAGTATAGTACAGTATGTAATCTGTAAATGGAGCAGATCAGC
AATGCTTGCTCCTGTTTCAGGCTTCCTTTTTCTCTGGGATCCTATCCTATCTTGTTGGCCACTGACAGCTGATGAAACTC
TTCAGTTATGTATATGCAGCATATCCTTGTTGAATTGTTGATTGAGTCATTGAGATGCTAAATCCTTTACTGCTCCGATG
AGCTTTGGATCTTATGTTTCGAGAAGTAAGTCGGGAATCCTTTAAAGAAAAATG---TTTTGCTTTTGTTCTGCAAGATC
TCTAGAGAAAACGGCTACAGCAATCCACGATTAGCTTACCTACTACCTGCTGGGTAGGAGGACATGTGTTTTGCGTCAGC
CCGGCTACAGCAAAACGAAAAGAGAGTGACGAAAGGTCATGCATTGTTAATAGTCGATGAGAAAGTAGATTTGGGATCTA
ATCTAACTCATGCTGCCAGTTTGTCCCTA-GTCGAGTATGAAGTTGACCTGCATGTGCAGGAGAGCTTGCATCCCTATTC
GCGAAAATTCCTTTACAAAACCGCGATACACTGCTTTACAAACATTAAATTCTGGTTTGGAAAACGACAACTGGAGCTTC
GTTTCCTTTCCTTTGCGGTTAGCTGATAACTAGTGAAAAATGAATTGCAAAAAACCAAAGTCGACCAAGA--TTTTTTTT
ATCTGTAAATCGACGGGGCAAGCAAAATGGACTAACAAATACTGCATGAAAAACTGTCATCGATACTCG-----------
--------GAAAATGAGCTGAACATACCACGTAAACGGGCGCTTGATTTAGAATCATAAGTCGTAGTTGAATACATTGTT
GACATATGGCATCAAGGTGCTAATTTTACTCACAGACAT-----------------------------
>SNPs
SSS-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
------------S-------------S-S-------------------------S-------------------------
-------------------------S-------S---------------------------S------------------
---------------------------------------------------------------S----------------
---------------------------SSS-----------S--------------------------S-----------
--------------------S-----------------------S-----------------------------------
----------------------------------------------S----S--------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S------S------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------S--------------------------------------SS-------------
--------------------------------S-----------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
---------------------------------------------------S----------------------------
------------------------S----S---S---------S----------------S---S------------S--
----------------------------------------------------S---------------S-----S-----
--------------S--------S-------------S--------S--------S-----------S----------S-
------------------------------------------------------S-------S-----
>forward_617
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGCTCGGGCAAGAATTTCCA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_1746
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ACTGCTGCACCGATG
AGTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
