>input_sequence_80100
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----------------------------------------------------------------------ATGCATTTCG
CCATGTCGCCCGACAGCCTCCTCCTCTTCTACGCCGTCGCGGCGGCCGTCACCGCCGCCTTCGGCCTCTTCTCGCTGTAC
AAGCACCTCTTGCGCCGCCGGCGGCACAACCCCCGCGCGGAGGCTCCGGACGGGGACCCGGAGGAGCGCCTGCCGCTCGC
CGTGATTACGGTGGCGTCGAGCCTTCTCCCACCGTTCATGTACAACCGGCTCGTCCGGCACAGTGGCAAGG---ACGACG
CCGGCTCGGCGGAGTGCGCGGTCTGCCTCGCCGCCATCCGGGTCGGCGCCATGGCGAAGCTGCTGCCGGCGTGCGCCCAC
GTGTACCACGTCGAGTGCATCGACCTGTGGCTGGCCTCGCACTCGACGTGCCCTCTCTGCCGGTGCAGGGTCGGCGATGA
TCGCTCGGCTCAGGACCTTGCTTGTCTTTCACCTGCATAG----------------------------------------
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>chr7D_1_TraesCS7D01G332700
AACTATTGATGCATTTTTTTTCTCTTTTAGTGAAATGACATGCAACTCTCCTGCATGATTTCAGAAGAAAAGGAGCTGAG
CTGCAGGTGATCAGGCTGGTCGTAATGGTAATATCACAAGGGGTATCATGCATGTCAACTAGATTTTTAAGATGATGTGA
CACACAATTAAATGAGGAAAGAGAGGATGTGATATCATATCATGATACTGTATCATATTAAATGTTGTAATACTTTGTGT
CATGCATGATAATTAATAAGGCAACCTAAGATGCTACTATGATACTATATATTACGGAAGTAGTATCATAAATTAGTATC
ATATGCATGTACTAGTATATGATACTCTCCATTACAACCAACCTCAAGTGTGTTCTGACTTTTAAGGTTGCTTCCTTTGG
TTCGATGGAGCGCGTTTCACTTCCCACACCGAGGAATACATTACTCTTATGTCTGAAAATTAGTTACTACACCATCCGTA
TCAAAGTACTTGTTGTTAGGGGAAACTAGTACAAATTCCCCCAACTATAAGTATAAATTTGAGTTTGGTCTATCTAACAA
CTCCCTTCACAAAGCGCTGATGTAACCACATCCAAATATGTAGTCCCTGTCAATGGCACACCAGCATAATCCCGAGCGAA
TAATCTGACGATAT-AAATACGAGCCATGCGCCTAGTCCTA----ATGCACACAAGGATCTCTTCATTTGTTACGAACCC
GTACTGCTATTGACCCCTTCAAATCAGTGGAATAAAAGGAGTAGTCGCTCTCGCTGCT---------GATGCGGCTGCTG
CTACTGGTATGTTAACCACCAGAGAAGCGTCGGTTGAGGCTCCAATTATTCAGACAAACCAAACGTAATCATCAGAAGAG
TCCACTTCAGCTCGAAAACTTCGAAGAGGAGGCAGCACTGTGCACGCAACCACAAGAGACATAAAATCGAATCATGTTG-
-----------CTCCAGCGCCAGTTAGCCTACTCAACGGCACTGCCCGTTCCCAGCCTCA----AGCGCTATGCATTTCG
CCATGTCGCCCGACAGCCTCCTCCTCTTCTACGCCGTCGCGGCGGCCGTCACCGCCGCCTTCGGCCTCTTCTCGCTGTAC
AAGCACCTCTTGCGCCGCCGGCGGCACAACCCCCGCGCGGAGGCTCCGGACGGGGACCCGGAGGAGCGCCTGCCGCTCGC
CGTGATTACGGTGGCGTCGAGCCTTCTCCCACCGTTCATGTACAACCGGCTCGTCCGGCACAGTGGCAAGG---ACGACG
CCGGCTCGGCGGAGTGCGCGGTCTGCCTCGCCGCCATCCGGGTCGGCGCCATGGCGAAGCTGCTGCCGGCGTGCGCCCAC
GTGTACCACGTCGAGTGCATCGACCTGTGGCTGGCCTCGCACTCGACGTGCCCTCTCTGCCGGTGCAGGGTCGGCGATGA
TCGCTCGGCTCAGGACCTTGCTTGTCTTTCACCTGCATAGATTGATCGACCATCACATAGGCAACACCGCGAGAGATATT
TGTACAG-TTTTTTTTTCTTTTTTCCTTTTTCTGAACTTCGAGATAAAATCTGCATGTATGCTGATGCTGGTGTATAGT-
---GTGTGAACCGTAGACTCGTGTGTTTCACTGGAGTTGCATTTGGATATCTCAGACGTCAGGATCCCATGAAGGCACGA
ACTGACTGCCAAATTACACATTTCCAGTGTCAACATGTGAGACCGAGATATTTCTGGCCGATGCAGCATTCGAGCAGGGC
AGCAGGGGAATACATGACATAATGCCAATGTACTCATCAGGAATGCAATAATGAGATATTACACATAGCAGGAGGTAAAT
ACATAAAACGGAAGCAAGCCGAATAAAATGTCTTTTTGAAAGAAATAAAACAAATAAATGTTGTAGTA-GGAGGTGAATG
AATGCATGAAATCGAAGCAAAAAAATGCAAGTA-----------------------------------------------
--CAGGAAAAAAAAAGGGGAGGCATCCGAGAGAGGATC-TTTTTTCCTCACTCCATGCTCCACCACATAGAGAACACAC-
-TGCATTGCTGCAGCTAAATAGTTGATCATATACAT-GACACGCAGACAGGAGTTTAAGCAAACCCATCAGAAACGCGAG
GCAACAAGAAATGTTACAGACAGAGACATGCACAAAATAAATGACCGGGTGTTGAGTCGCCATGAAGAACTTTGGCTTAA
ATCTGCACCGGTTCGGCCATAGGTTGTTATTCCTGTGAAGCTGCCATTTCTGGGGGATGAACTGCAGTGGAACAAGTATG
GGGTTAATGGTTCTGCAGAGACTTGACATATTAAATTAAACAATATGTAGCTCAAAAAGGAATTTTCTATGATTCAGTTT
CTAAGAACTGAAATAAGCAAAGTGGCTGCATTGTCGTGACTCTTGG----------TTATGATAATCTTGTCGGTGAAGC
TGTTTTTAGATATTTGG--GTGTTTGGCTAACTGCCTTCTTTTCATGACCCAGTTTCAAAAAGGGATATAG
>chr7B_9
ATC--------CATTTTTTTTCTCTTTTAGTGAAATGACATGCAACTCTCCTGCATGGTTTCAAAAGAAAAGGAGCTGAG
CTGCGGGTGAT---------------------------------------------------------------------
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--------------------------------------------CAAGTGTGTTCTGACTTTTGAGGTTGCTCCCTTTGT
TTCGACGGAGGCGTTTCAG-TTCCCACACCGAGGAATACATTACTCTTATGTCTGAAAAATAATTAC-------------
---------------------------------------------------TATAAATTTGAGTCAGGTCTATCTAATAG
CTCCCTTCACAGAGCGCTGATGTAAACACATCCAAACATGTAGTCCCTGTCAATGGCACACCAGCATAATCCCGAGCGAA
TAATCAGACAATATAAAACACGAGCCATGCGCCTATAGTCCTATCATGCACAGAAGGGTCTCTTCATTTGTTACGAACCC
GTACTGCTATTGACCCCTTCAAATCAGTGGAATAAAAGGAGTGGTCGCTCTCGCTGTTGCTGCTGCTGCTG---------
---CTGCTATGTTAACCACCAGAGAAGCGTCGGTTGAGGCTCCAACTATTCAGACAAACCAAACCTAATCATCAGAACCG
TCCACTTCAGCTCGAAAACTTCGAAGAGGAGGCAGCACTGTGCACGCAACAAGAAGAGACATAAAATCGAATCATGTTG-
-----------CTCCAGCGCCAGTTAGCCTACTCAACTGCGGCGCCCGTTCCCAGCCTCG----AGCGCTATGCATTTCG
CCATGTCGCCCGACAGCCTCCTCCACTTCTACGCCGCCGCGGCGGCCGTCACCGCCGCCTTCGGCCTCTTCTCGCTGTAC
AGGCACCTCGTGCGCCGCCGGCGGCACAACCCCGGCATGGAGGCTCCGGACGGGGATTCCGAGGAGCGCCGGCCGCTCGC
GGTGACTACGGTGGCGTCGAGCCTTCTCCCGCCCTTCATGTACAACCGGCTCGTCCGGCACAGCGGCAAGGGCGACGGCG
CGGGCTCGACGGAGTGCGCGGTCTGCCTCGGCGCCATCCGGGTCGGCGCCATGGCGAAGCTGCTGCCGGCGTGCGCCCAC
GTGTACCACGTCGAGTGCATCGACCTGTGGCTGGCCTCGCACTCGACGTGCCCTCTCTGCCGGCGCAGGGTCGGCGATGA
TCGCCCGGCTCAGGACCTTGCCTGTCTTTCACCTGCATAGATTGATCGACCATCACGTAGGCAAGACCGCAAGAGATATC
TGTACAGTTTTTTTTTTCTTTTTTCCTTTT--TGAACTTCGAGATAAAATCTGCATGTATGCTG------GTGTATAGT-
---GTGTGAACTGTAGACTCGTGTGTTTCACTGGAGTTGCATTCGGATTTCTCAGCCGTCAGGATCCCATGAAGGCATGA
ATTGATTGCCAAAATACACACTTCCAGTGTCTACATGTGAGATCGAGATATTTCTGGCCGATGCAGCATTCGAGCAGGGC
AGCAGGGGAATGCATGACATAATGCCAATGTAATCATCAGGAATGCCATAATGAGATATTACACATAGCAGGAGATAAAT
ACATAAAACGGAAGCAAGCCAAATAAAATGTCTTTTTCAAAGAAAGAAAACAAATAAAATGTTGTACTGGGAAGTGAATG
AATGCATAAAATTGAAGCAAAAAAATGCAATTACATGAGACGAGGGGCGGCAAGAACCTCTCTGATTGCTCATTTGCAAG
ACCAGGAAAAAAAGGGGGGAGCCATCCGAGAGAGGATC-TTTTTTCCTCACTCCATGCTCCACCACATAGAGAACACAC-
-TGAATTGCTGCAGCTCAATGGTTGATCATATACAT-GACACGCAGACAGGAGTTTAAGCAAACCCATCAGAAATGCGAG
GCAACAAAAAATGTTACAGACAGAGACATGCACAAAATAAATGACCGGGTGTCGAGTCGCCATGAAGAACTTTGGCTTAA
ATCTGCACCGGTGCGACCATAGGTTGTTATTCCCGTGAAGCTGCCATTTCTGGGGGATGAACTGCAGTGGGACAAGTATG
GGGTTAATGGTTCTGCAGAGACTTGACATATCAAATTAAACAATACGTAGCTCAAAAAAGAATTTCCCATTATCCAGTTT
CTAAGAACTGAAATAGGCAAAGTGGCTGCATTATTGTGACTCTTGGCTCAGGTGGGT--TGATAATCTTGTTGATGAAGC
TGTTTTTAGATATTTGG--GTGTTTGGCTAACTGCCTT-TTTTCATGACCCAGTTTCATAAAGGGATATAG
>chr7A_681
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---------------------------------------------ATGCACGCAAGGATCTCTTCATTTGTTACGAACCC
GTACTACTACCGACCCCTTCAAATCAGTGGAAT---------GGTCGCTCTCGCCGCC---------GCTG---------
---CTGCTATGTTAACCACCAGAGAAGCGTCAGTTGAGGCTTCAATCAGTCAGACAAACTGAACCTAATCATCAGAACGG
TCCACTTCAGCTCAAAAACTTCGAGGCGGAGGCAGTACTGTGCACGCAACCACAAGAGACATAAAC-CGAATCATGCCAC
ACGCAGCTCCACTCCAGCGCCCCTCAGCTCACGCCCATTCCAAGCTCGGCTCCTAGCTAGGCTAAGCGGCATGCGTTTCG
CCATGTCGCCCGACAGCCTCCTCCTCTTCTACGCCGCCGCGGCGGCCGTCACCGCCGCCTTCGGCCTCTTCTCGCTGTAC
AAGCACCTCGTGCGCCAACGGCGGCACCACCCCAGCGCGGACGCACCGGACGGGGACATGGAGGAGCGCCGGCCGCTCGC
GGTGACCACGGTGGCGTCCAGCATTCTCCCGCCGTTCATGTACAACCGGCTCGTCCGGCACAGCGGCAAGGGCGACGACG
CGGGCTCGACGGAGTGCGCGGTCTGCCTCGGCGCCATCCGGGTCGGCGCCATGGCCAAGCTGCTGCCGGCGTGCGCCCAC
GTGTACCACGTCGAGTGCATCGACCTGTGGCTCGCCGCGCACTCGACGTGCCCTCTCTGCCGGTGCACGGTCGGCGGTGA
TCGCTCGGCTCAGGACCTTGCTTGCCTCTCACCTGCATAGATTGATCGACCATCACATCCGCAAGA------GATATCTC
TGTACAG-CT----------------TTTTTCTGAACTTCGAGATAAAACCTGCATGTATGCCG------GTGTATATAT
ATAGTGTGAACTGTAGACTCGTGTGTTTCACTTGGAGTTGC-------ATCTCAGCCATCAGGATCCCATGAAGGCATGA
ATTGATTGCCAAATTGTACACTTCCAATGTCAACATGTGAGACCCAAATATTTCAAGTCGACGCAGCATTCGAGCAGGGA
--------AATGCATGACATAATGTCAATCTAATCATCAGGAATGTGATAATGAAATATAACAGATAGCAGGAGATGAAT
ACATAAAACCGAAGCGAACCAAATAAAATGT---------------------------------AGTA-GGAGATGAATG
AATGCATAAAG----------AAAATGCGTGTACATGAGGCGACGGG-GGCAAGAACCCCTCTGATTGCTCAGTTGCAAG
ACCAGGAAAAAAAGGGGGGAAGCATCA-AGAGAGGATCTTTTTTTCCTCACTCCACGCTCCATCACATATGGAAAACACA
ATGCATTGCTGCAGCTCAATAGTTTATCATATACATAGACATGCAGACAGGAGT-TAAGCAAACCCATCAGAAACGCGAG
ACAACAAAAATTGTTGCAGACAGAGATATGCACAAAATAAATGACCAGGTGTTGAGTTGCCATGAAGAACTTTGGCTTAA
ATCTGCACCGGTCCGACCATAGGTTGTTATTCCTGTGAAGCTGCCATTTCTGGGGGATGAACTGCAGTGGGACAAGTATG
GGGTTAATGGTTCCGCAAAGACTTGACATG-----TTAAACAATATGTAGCTCAAAAAAGAATTTTCCATGATCCAGTTT
CTAAGAATTGAAATAGGCAAACTGGCTGCATTATCGTGACTCTTGGCTCAGGTGGATTATGATAATCTTGTTGGTGAAGC
TGTTTTGGGATATTTGGGTGTGTTCGGCTAACTGCCTT-TTCTCATGAC-----TTCAAAAAGGGATATA-
>SNPs
-S-SSSSSSSS----------------------------------------------S-----S----------------
----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S--------S------S
-----S----SSSS--SSSS---------------------------------------S--S----SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SS-----------S-S
-----------S-------------S----------S-------------------------------------------
-----S---S--------S----------------SSSSSS---------------------------------------
------------------------------------------S-------------------------S--SSSSSSSSS
SSS---S---------------------------------------------------------S------------SS-
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-------------------------------------S--SSS----------------S--------------------
------------------------------------S-------------------------------------------
---------S-----------------------S-----------------------S------------S---------
S----S------------------------S--------------------------------S----------------
-S------S---------------------S-------------------------------------------------
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----------------------------------------------------------------S-----S--------S
----------------------------------------------------------------SSSSSS----------
-----------S-------------------------------S-----------S---------------------S--
-S---S--------------S-----------------------------------------------------------
-----------S--------------------S-------------S---------------------------S-----
--------------------S----------------S-------S------------SSS-SS----------------
-------S----S-------------------------------------------------------------------
-------------SS-----------------------------------------------------------------
----------------S---------------------------------------------------------------
-------S------------------------------------------------------------------------
------------S--S------------------------------------------------------S---------
-------------------------------S--------------------------S--------S-----S------
---------------S----------------S--------------------------------------S--------
--------------------------------------S--------------------------------
>forward_676
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----------------AATACGAGCCATGCGCCTAG--------------------------------------------
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>reverse_2416
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---------------AGCAAAGTGGCTGCATTGTC---------------------------------------------
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