>input_sequence_80080
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-------------------------------------ATGTCGATCTGCACGAGGATGGACGCGCCGCGCGGCGCCGCGC
TCGGGAAGCGGAAGGAGCGGGAGTACTCGTCTTCGTCGGAGCAGCGGCAGCCGCTGTTC---CCGCCGCCGCCGCCGCCC
GGGAGACAGGAGCTGCTGCGCAACAAGCCGCACCAACTGTCGCGGTTCGCCAACAAGTCCC---CCATGCCGACGCCGCC
TCCCCAGGGCGGGAGCAGCAAGCTGCTCGCCGGGTACCTGGCGCACGAGTTCCTCAAGTTCGGCACGCTCCTCGGGGAGC
GCCCCCCCGCGCCGGGCCGGAAGGAGACCGCCACGCCCCCGCCCGCACCAACACCCGACCCCGCGAGGAGGTACGCCGAG
GCGTCGATGCTGCTCATGGCGGGCGGCACCCGCATCCCCGGGGTTTTCAACCCGACGCAGCTCGGCTGCTGGCTCCGGAT
TAAGGAGTGA----------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G255600
CTCATGGGCAAGGGCATTTAGCTAGGGCATACATAGTTGTGGGGCCTACCTCCTAGGCCTTTCCCATCACGAGGGAAGCG
TGAGTGGTCCCCAATGAACATGTTGGCGGTCGGCACCTCCTCGTTGTAGGTCGTGCAATTCGGTGCTCCGCCCCACATAG
CTATCGCCT-CCCCATGTTCTCTCTTAGTATGCGGATGAAGGAGAAAAAGGAAGGAGACGACGTGGAAACAAACTTCGCA
CATGTGGGTGTA----AAATTGGTAAAGAAGGCACG---TCATACCGGGTAAACATCGATTATTCGGATCAAGTGGTCAT
AAGCGTGTGTCGCATGGAAAAACAAAAGAGCGGGCGGTTGCGCCTAGCAAATGCCACACTATCCCATCACCGAGATTCGT
GCAAGTCATCCGACGGTCGTCGTTGCGTCGCGCCTGAGAGGTAATGAGAGAACTTTTTTTAACGC-ATTTTTTAGGGTAA
TTCTTCAACGCAATTGAATGAGCTAATTACTGCATATAGCCCAATTGGACGATAATGTTAACCC----------------
--------------------------------------------------------------------------------
----------------------------------------------------AATTGCATGCCCACACGACGTATAGAAT
GACAACTGTACCCTCAGCCTTTCCAGAACCATTAATTACCCCCCACGCAAGGGGCAAACCCGCACGATGGCATTCTTGTT
ATTTATAGCGTACCCGATGGCAACTGCCAAACAGCTTGAATATAAATAGACCACCGCACCCGGCCACCCCGTCCTCCCTC
CGCTCCGCCTCATTCTGCAGAGAGCCCTCCCTCCCCTCCTCCCCCCTCTTTCCACCAAAATCTCCGCTTCGTTCGTCGCC
TTCTCTCTTTCTACCCCCTGTGATCGTACGGATTTGCTCTCCAGTGGGCCCCGCCGCACCCGCACAACTCCCTTCCTCTG
TAGCTTTTTAAACCAGTTTCCTTTTTCCTCCGCATATTTTCTTCCTTCCCCTGCCGCTATCGGCGATCCCGTCCGGCCGC
TGCAGTCGTGGCGGAGGCGCGCGTCGGGGCCCTCGGGATGTCGATCTGCACGAGGATGGACGCGCCGCGCGGCGCCGCGC
TCGGGAAGCGGAAGGAGCGGGAGTACTCGTCTTCGTCGGAGCAGCGGCAGCCGCTGTTC---CCGCCGCCGCCGCCGCCC
GGGAGACAGGAGCTGCTGCGCAACAAGCCGCACCAACTGTCGCGGTTCGCCAACAAGTCCC---CCATGCCGACGCCGCC
TCCCCAGGGCGGGAGCAGCAAGCTGCTCGCCGGGTACCTGGCGCACGAGTTCCTCAAGTTCGGCACGCTCCTCGGGGAGC
GCCCCCCCGCGCCGGGCCGGAAGGAGACCGCCACGCCCCCGCCCGCACCAACACCCGACCCCGCGAGGAGGTACGCCGAG
GCGTCGATGCTGCTCATGGCGGGCGGCACCCGCATCCCCGGGGTTTTCAACCCGACGCAGCTCGGCTGCTGGCTCCGGAT
TAAGGAGTGATGGAGGCACGACCGCGGTGGCGGTTCGCGTCCGGGTGCGTACCGCGTGCACGGCTCCCGAGGCGCGCGAC
CCGGCGGCGACGAGCCCATGCTTTTGGACATAGCAAGTGGTGGTGGTGGTGGTTACTTTGCCCAGATCCTTTTCCTTTTT
TCTATGTTCAGGTACTAT--AGTTGTTTCGTTTTAAGAATTTCATGTAGAGTTGATGGGAAACTAGCGGCACTAGAATTT
CATGGGGGTAGTAGTAC---TACTTTTTAACATGCGTCTCCGTCTCTGCTATGTGAGCTCTGTATCCGAAGGTGTTCGAT
GTGATCTCCGGCTACCGAGTATGGTTGATAATTGAAGTGCATGGAAATCCTTCGCTTGCATATGTTTAATAC--------
--------------------------------------------------------AGTGTAATTTTAACTAGTACTCCC
TCTGTAAACTAATATAAGAGTGTTTAGATCACTAAAATAGTAATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACA
TTGCTCCGAGATTAAATTGAGCAACGGCGGAGTGTCGGCTTTT---GTTGGCATCGCGTGTGGAAGCAACTTCCTTCAGG
GAGCTTTACGTTCAACGATTGTTCTAGTGATGTCGTTATTAATTACC---AGGCGATTTGATCAATACCCAACTCTGATT
TTGCACCGATGCCTCCCACAATGTACTGTGTCTCGATTGTCCCTTCATCTGGTGAAGAATCTGTTGCATTTGCTATCAAG
GCGATGTGCTGGCATGTTTTCATGACTGAAATTTTGACATTTTATT----------------------------------
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-------------------------------------------------------------------CATGATGAGGTGA
TTGCATGTTCTTATCAGAAAAAGAAAAGAAAGGAGGAGAGGGTGGCGACTGGCGACCTGGTCACCTGGGCACACCATTAT
GCATTTCTCAAG-----GAAACAAAAGAGTGAAACGTGGCAGTATTAGTCTTTGTTCTCATTTTCTTTTCTGGCTGAGAA
GTCATTGTTCTCCATTTCTCGTTCAATTTTCTGTCAATTCTTCTTGCATGCATGCAGAGGTGTCACAGCAG
>chr6D_2
-TCATGGGCAAGGGCCTTTAGCTTGGGCATACATAGTTGTGGGGCCTACCTCCTAGGCCTTTCCCATCACGAGG-AAGCG
TGAGTACTCCCCAATGAGCCTGTTGGTGGTCGGCACCTCCTCGTTGTAGGCCGTGCAATTCGGTGCTCCGCCCCACATAG
CTATCGCCT-CC-CATGTTCTCTCTTAGTATGCGAATGAAGGAGAAAAAGGGAGGAGACGACGTGGAAGCAAACTTCGCA
CATGTGGTTGTATGAAAAATTGATAAAGAAGGCGCG---TCATAGCGGGTCAACATCGATTAATGGGATCAAGTGGTCAT
AAGCGTGTGTCGCATGGAAAAACA--GGAGCGGACGATTGCGCCTAGCAA-TGCCACACTATCCCATCATCGAGATTCGT
GCAAGTCATCCGGCGGTCGTCGTTGCGTCGCGCCTGAGAGGTAATGAGAGAACTTTCTTCAACGCAATTTTTTAGGGTAA
TTCTTTAACGCAATTGAATGAGCTAATTACTGCATATAGCCCAGTTGGACGATATTGTTAACCTCATTGTATTTTTCTTT
CTTTGGGGGTCTTTTCGCATGTGTGTTGGGACACGTGTGGTCTCTCAGGGTCTTTCGACGATGCTGCGTCTGTGCTACAT
CTGTATCCGTTTCTGGATAAGGTTTAATGCAGTATTCTTCTCCAAAAAAAAAAATTGCATGCCCACACGACGTACGCAAT
GACAACTATACCCTCAGCCTTTCCAGAACCATTAATTACCCCCCACGCAAGGGGCAAACCCACACGATGGCATTCTTGTT
ATTTATAGCGTACCCGATGGCAACTGCCAAACAGC-TGAATATAAATAGACCACCGCACCCGGCCACCCCGTCCTCCCTC
CGCTCCGCCTCATTCTGCAGAGGAGAG-CCCTGCCCTCCTCCCTTCTCTTTCCACCAAAATCTCCGCTTCGTTCGGCGCC
TTCTCTCTTTCTCCCCCCTGTGATCGTACGGATTTGCTCTCCAGTGGGCCCCGCCGCACCCGCACAACTCCCTTCCTCTG
TAGCTTTTTAAACCAGTTTCCTTTTTCCTCCGCATATTTTCCTCCTTCCTCTGCCGCTATCGGCGATCCCGTCCGGCCGC
TGCAGTCGTGGCGGAGGCGCGCGTCGGGGCCCTCGGGATGTCGATCTGCGCGAGGATGGACGCGCCGGGCGGCGGCGCGC
TCGGGAAGCGGAAGGAGCGGGAATACTCGTCTTCGTCGGAGCAGCGGCCGCCGCTGTTC---CCGCCGCCGCCGCC---C
GTGAGACAGGAGCTGCTGAGGAACAAGCCGCACCAACTGTCGCGGTTCGCCAACAAGCCCC---CCATGCCGACGCCTCC
TCCCCAGGGCGGGAGCAGCAAGCTGCTGGCCGGGTACCTGGCGCACGAGTTCCTCAAGTTCGGCACGCTCCTCGGGGAGC
GGCCCCCCGCGCCGGGCCGGAAGGAGACCGCCACGCCCACGCCCGCACCAACACCCGACCCCGCGAGGAGGTACGCCGAG
GCGTCGATGCTGCTCATGGCGGGCGGCACCCGCATCCCCGGGGTTTTCAACCCGACGCAGCTCGGCTGCTGGCTCCGGAT
TAAGGATTGATGGAGGCACGCCCGCGGTGGCGGTTCGCGTCCGGGTGCGTACCGCGTGCACGGCTCCCGAGGCGCGCGAC
CCGGCGGCGACGAGCCCATGCTTTTGGACATAGCAAGTGGTGGTGGTGGTGGTTACTTTGCCCAGATCCTTTTCCTTTTT
TCTATGTTCAGGTACTAGA----TGTTTCGGTTTAAGAATTTCATGTAGAGTTGATAGGAAACTAGCGGCATCAGAATTT
CATGGGAGTAGTAGTACCAGTACTTTTTAACATGTGTGTCCGTCTCTGCTATGTGAGCTCTGTATCGGAAGGTGTTCGAT
ATGATCTCCGGCTACCGAGTATGCTTGATAATTGAAGTGCATGGAAATCCTTCGCTTGCATATGTA--------------
------------------------------------------------------------TAATTTTAACTAGTACATTT
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---CTCCGAGATTAAATTGAGCCACGGCGGAGTGTCGGCTTTTGTTGTTGGCATCGCGTGTGGAAGCAACTTCCTTCAGG
GAGCTTTACGTTCAACGATTGTTCTAGTGATGTCGTTATTAATTACTACTAGGCGATTTGAACCATATCCAACTCTGATT
TTGCACCGATGCCTCCCACATTGTACCGTGTCTCGATTGTCCATTTATCTGGTGAAGAATCTGTTGCATTTGCTAACAGG
GCGATGTACT----------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr6A_3
--CATGGGCAAGGGCCTTTAGCTGGGGCATACATAATTGTGGGGCCTACCTCCTAGGCCTTTCCCATCACGAGGGAAGAG
CGAGTACTCCCCAATGAGCCCATTGGCGGTCAACACCTCCTCGTTGTAGGCCGTGCAATTCAGTGCTCCGCCCCACATAT
CTATCGCCTCCC-CATGTTCTCTCTTAGTATGCGAATG---GAGAAAAAGGGAGGAGACGGCGTGGAAGCAAACTTCGCA
CATGTGATTGTATGAAAAATTGATAAAGAAGGCACATCATCATACTGGGTCAACATCGATTATTGGGATCAAGTGGTCAT
AAGCGTGTGTCGCATGGGAAAACAAAGGAGCAGACGATTGCGCCTAGCAAC-GCCACACTATCCCATCACCGAGATTCAT
GCAAGTCATCGAACCGTTGTCGTTGCGTCGCACCTAGGAAGTAATGGGAGAACTTTCTTTGACGCAATTTTTAAGGGTAA
TTTTTTAAGGCAATTGAATGAGCTAATTACTGCATATAGCCCAATTGGACGATAATGTTAACCC----------------
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----------------------------------------------------AATTGCATGCCCACACGACGTATACAAT
GACAACTATACCCTCGGCCTTTCCAGAACCATTAATTACCCCCCACGCAAGGGGCAAACCCACACGATGGCATTCCTGTT
ATTTATAGCCTACCCGATGGCAACTGCCAAACAGCTTGAATATAAATAGACCACCGCCCCAGGCCACCCCGTCCTCCCTC
CGCTCCGCCTCATTCTGCAGAGAGCCCTCCCTCCCCTCCTCCCCTCTCTTTCCACCAAAATCCCCGTTCCGTTCGGCGCC
TTCTCTCTTTCTCCCCCCTGTGATAGTACGGACTTGCTCTCCAGTGGGCCCGGCCGCACCCGCACAACTCCCTTCCTCTG
TAGCTTTTTAAACCAGTTTCCTTTTTCCTCCGCATATTTTCCTCCTTCCCCTGCCGCTATCGGCGATCCCGTCCGGCCGC
TGCAGTCG------------------GGGCCCTCGGGATGTCGATCTGCGCGAGGATGGACGCGCCGCGCGGCGGCGCGC
TCGGGAAGCGGAAGGAGCGGGAGTACTCGTCTTCGTCGGAGCAGCGGCAGCCGCTGTCCCCGCCGCCGCCGCCGCCGCCC
GGGAGACAGGAGCTGCTGCGCAACAAGCCGCACCAACTGTCGCGGTTCGCCAACAAGCCGCCTACCATGCCGACGCCACC
TCCCCAGGGCGGGAGCAGCAAGCTGCTCGCCGGGTACCTGGCGCACGAGTTCCTCAAGTTCGGCACGCTCCTCGGGGAGC
GGCCCCCCGCGCTGGGCCGGAAGGAGACCGCCACGCCCGCGCCCGCACCAACACCTGACCCCGCGAGGAGGTACGCCGAG
GCGTCGATGCTGCTCATGGCGGGCGGCACCCGCATCCCCGGGGTTTTCAACCCGACGCAGCTCGCCTGCTGGCTCCGGAT
TAAGGAGTGATGGAGG-ACGCGCGCGGCGGCGGTTCGCGTCCGGGTGCGTACCGCGTGCACGGCTCCCGAGGCGCGCGAC
CCTGCGGCGACGAACCCATGCTTTTGGATATAGCAAGTGGTGGTGGTTGTGGTTACTTTGCCCAGATCCTTTTCCTTTTT
TCTATGTTCAGGTACTACTCAGTTGTTTCGTTTTAAGAATTTCATGTAGAGTTGATGCGAAACTAGCGGCACTAGAATTT
CATGGGGGTAGTA-------TAGTTTTTAACATG----------------------------------------------
------------TACCGAGTATGCTTGATAATTGAAGTGCATGGAAATCCTTCGCTTGCATATGTTTAGTACGTACTCCT
TCCGTTTCAAAATAGACGACCCAACTTTATAGAGTCATCTGTTTTGGAAAGGAGGGAGTACAATTTTAAC---TACATTT
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---CTCCGAGATTAAATTGAGCAACGGCGGAGTGTCGGCTTTTGTTGTTGGCATCGCGTGTGGAAGCAACTTCCTTCAGG
GAGCTTTACGTTCAACGATTGTTCTAGTGATGCCGTTATTAATTACTACTAGGCGATTTGATCCATGTCCAACTCTGATT
TTGCACCGATGCCTCCCACATTGTACTGTGTCCCGATTGTCCCTTCATCTGGTGAAGAATCTGTTGCATTTGCTATCAGG
GCGATGTACTGGAATGTTTTCGTGACTGAAATTTTGCCATTTTATTCAGGGTGTGGCTAGATGAGACTTAACAAAGTTTC
AGCCAAGTGATAGAACATATAAAAGGAAAGAAAGAAAAACTTTAAAGAAAATTTTACACGGATCTCCACACAAGATCTAA
CGAATATGGCATCGAGTGAGACTTAATGAAGTCTCAGTCGACTGAGATTTAGCAATCTTGTTTTATCCATGATGAGGTAA
TTGCATGTTCTTATCAGAAAAAGAAAAGAAAGGAGGAGAGGGTGGCGACTGGCAACCTGGTCACCTGGGCACACCATTAT
GCATTTCTCAAGTCAAGGAAACAAAAGAGTGAGACATGGCAGTATTAGTCTTTGTTCTCATTTTCTTTTCTGGCTGAGAA
GTCATTGTTCTCTATTTCTCGTTCAATTTTCGGTCAATTCTTCTTGCATGAATGCAGAGGTGTCACAGCAG
>SNPs
S--------------S-------S--------------------------------------------------------
-----SS----------S-S------------------------------S-----------------------------
------------S---------------------S----------------S----------------S-----------
-------S--------------S---------------------------S-------------S---------------
--------------------------S------S--S-------------S-----------------------------
--------------------------------------------------------S-----------------------
-----S--------------------------------------------------------------------------
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----------------------------------------------------------------------------S---
-------S-----------------------------------------------------S------------------
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--------------------------------------------S------------------------------S----
------------S-------------------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------S------------------------S-----
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---------------------------------------------------------S-------------------S--
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-S------------------------------------S-----------------------------------------
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--------------------S-----------------------------------------------------------
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-----------------S--------------------------------------------------------------
----------------------------------S--S----------------------------S-------------
S----------------------S--------------------------------------------S-----------
-----------------------------------------------------------S----------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------------------------------------------
----------------------------------------------S----------------S---S------------
--------------------S---------------------------------------------------------S-
-------S----S--------S--------------S-------------------------------------------
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------------------------------------------------------------------------------S-
-----------------------------------------------------S--------------------------
--------------------------------S--S--------------------------------------------
------------S------------------S------------------S--------------------
>forward_98
------------------------------------------------------------------------------CG
TGAGTGGTCCCCAATGAA--------------------------------------------------------------
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>reverse_2148
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-------------------------------------------------------------------CGGAGGGAGTACA
TTGCTCC-------------------------------------------------------------------------
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