>input_sequence_80073
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-ATGGACGCTGACGCCCAGGCGCCGGAGGCACCGTCGTCGCCGCCGCCGCCCCGGTCCGCCCGGTCGAGGCCGTCGAGCT
GGAGCAGCAGCGGCAGCTCCGAGTACACGAGCCTCCGGGACGTGCTCTCGGAGCTGGGCAA---CGGCGGCGGCGGCGGC
AGCTCCTCCGACCTCCACGACTTCGACACCTCCAACATCCCCATCCGCAACCAGCTGCTCAAGCACGCCGCGTCCGCCTA
CCTCCAGTCCGCCATCGTCGTCACGCCGCGCGAAAGGGGCTGCCTGAGCAGGGCCTGGCGCCGCCGCTGCCGCATCCTGC
TCCGGCCGTGCCCCGAGTGCGAGTGCGACGTGGACGTCGACCCCGTCCGCCGCTGCGCCGCGGCGTTGGCCGGCTCGGTG
CGCCGCGTCCTTGCCTCCCTCTGCGGCTGCGTCGCCTGCGTGTGGACGTAG-----------------------------
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>chr5B_1_TraesCS5B01G377000
GTAAACCCCACGTCCGAGTCGTCACGATCCAAAAGAATTGAAAACTGTTCAGTCCGTCAATTATTAATTAATGACTCATT
AATTTTTCCCGAGCAGCAAAAATATAGACAACGTGCATAACTCTTTCCTCGGCTCGGCTCAATCCCGCAACCCGCGTCGC
GTCGTGACGAGGAGGAGGAGCGCGCGTGTAGATCTCCTCTTCTCATGCTCATACAAGTGGTAGAAGAGCTCACCTTATAA
AGAGGTGCAACTCTTTCTCAACTTATGAGGTGGGACTAAACTTTAGGCTCACTCACTCCACTCACATGTGTGCATGAATG
GGCCAAGAGAATTTTAAAATTTTAATTGGGCTTTTGCCCAATAGCCCACCAGCAAATTCCAACATGCTCATCAGCGAGGT
GGTGAGCGATTATT--TATAACATAGTTGGACAAGCAGGAAAGTATATGTTTCAGGCTGAAATGAAACAACGATGGCGAA
CACCTTGGTAAAAGTTGTGCTTGAAGTTTTGCTTCATACTATCT-------------------------TAGTGTGAGTA
GCGACGTTGCCCACTACTGTCTACTAGGGCACTCAAATTCAGCTCAGAGAGTGTCCAAGCAGCACTGATATTCTTGTTAC
ATATGCGAGTGCCCATTGGTTTCCAGTA---ATTCCTAT-GGTATCAAAAAACAGTA---TGTTTTCCCCGTCACGCTGA
TCATGCAGTAGGGTTCCCTGCTATTATTGTCTGTC----TTCATTTGCCAGCTTTGGCCAGGTCCT-CCTACATTTAGGC
ATTGCCGTTAGAAAATAGAAGCACGCTAATCAGTCCAAGTG-TTTAACCTCGTTTTCCTTTCCTTCTCATCCCTTTATAT
TTATCAAATTAAATTATAAGGGCATGAGATTCTGAAACAATCGCCGGGATCGAGATTCCGAGGTTAACAATCGCCGTTGC
TCTTCAAAAGAATCTT-GCAAGAATCAGATACAAGCGCTCGACCTGAAAGTTAACCAATCGCATGGACCTTGGTGACGAC
GATGGACGCTGACGCCCAGGCGCCGGAGGCACCGTCGTCGCCGCCGCCGCCCCGGTCCGCCCGGTCGAGGCCGTCGAGCT
GGAGCAGCAGCGGCAGCTCCGAGTACACGAGCCTCCGGGACGTGCTCTCGGAGCTGGGCAA---CGGCGGCGGCGGCGGC
AGCTCCTCCGACCTCCACGACTTCGACACCTCCAACATCCCCATCCGCAACCAGCTGCTCAAGCACGCCGCGTCCGCCTA
CCTCCAGTCCGCCATCGTCGTCACGCCGCGCGAAAGGGGCTGCCTGAGCAGGGCCTGGCGCCGCCGCTGCCGCATCCTGC
TCCGGCCGTGCCCCGAGTGCGAGTGCGACGTGGACGTCGACCCCGTCCGCCGCTGCGCCGCGGCGTTGGCCGGCTCGGTG
CGCCGCGTCCTTGCCTCCCTCTGCGGCTGCGTCGCCTGCGTGTGGACGTAGCGCGCACAGATGCACCGCTGCCCCACGGC
GGCATTGCACGAGACGAGCTGCCATCGTGACATCGTCGCTGGCGTTTGGCCATGCATGCATGCATGCATGCTGATGTTTT
AATTACTACGCTGAACATGACTGCTTCGTGTATGTGCACGTAGGCATGATTTTGCTCTTTGCATTCTTAATTAGAATCGC
G---ATGGTGTCTGATAC------TACGACCGTACATATCTAGACGTGGGACTGTTT-AACTTCAATTTGTTGGAGATGT
AAATTATTATGATCTGCAATAGCTGTCGAACCTTCCCTGCTAGGGGTGGCATTTGCAAAAGTTTTTGCTGACGGTTTCTT
GAGAGATGCATGGCATTTTCTTCAGACACGCATGTCAGTATCTGCAAAGA-------------------------AAAAT
TAAAGGCAAAAAC--GAACAGAAACTGTCATCGTTTGATCTCGCGTCGCAACTAACGCTTTCAGCAAAATGCGTTTCTTG
AGAGATTTGTGACGTTTGATCTCGCGTCGCAACTGGCATTTGCAAAAAAAAAAATGTGTTTCTTGAAACGAAATGTGTTT
GATCTCACCTCGCAACTGGCATTTGCAAAAAACAAAAAAAATTGCTGGCGGTTTCTTCAGAGACGCGTGGCATTTTCTTT
TGAGACGCATGTCAGTTTATGCGCGGGAAATTTTGACGCAAAAACGATCAGAATTGTCATCGTTTGATCTCGTGTTGCAA
CTAAAATTTTCAGAAAAAATCGTTCGTTTGCCATCCCCTTCCTAGGTAACGTCAGTCAGATAACATTACAGATTATTATT
GCCTGAGATTCTTTATTACCTTTGTTAAATCAAATATGGATTGGCGGATCGTGGATGGAGGGCTCGTCCTTTGTTTCCTT
CAAAGTAATCCGGCTTTAGGACATAAGGGGAGAAGCTTCTTCTCCCTGCAAAAAAGAGAGGAGGAGAAGCTTCTCAGGCT
TTTGGGTGTTAACAATGAAGGAGAAATAAGTGTGTAAATTGGTTTCAA
>chr5D_383
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--------------------------------------------------------------CATGCTCATCAGCGAGAC
GGTGAGCGATTATATGTATAACATAGTTGGACAAGCAGGAAAGTATATGTTTCACGCTGAAATGAAACAA---------A
CACCTTGGTAAAAGTTGTGCTTGAAGTTTTGCTTCATACCATCTTGGTGTTCTGTTTCCTTCTTTCCCGTAGTGTGAGTA
GCGACGTTGCCCACTACTGTCTACTAGGGCACTCAAATTCAGCTC--AGAGTGTCCAAGCAGCACTGATATTCTTGTTAT
ATATACGAGTGTCCATTGGTTTTCAGTT---TTACCTATTGGTATCAAAAAAAC--AGTATGTTTTCCCTGTCACGCTGA
TCATGCAGTAGCGTTCCCTGCTATTATTGTCTGTC----TTCATTTGCCAGCTTTGGCCAGGTCCTCCCTACATTTAGGC
ATTGCAGTTAGAAAATAGAAGCACGCTAATCAATCCAAGTG-TTTAACCTCGTTTTCCTTTCCTTCTTATCCCTTTATAT
TTATCAAATTAAATTATAAGGGCATGAGGTTCTGAAACAATCGCCGGGATTGAGATTCCGAGGTTAACAATCGGCGTTGC
TCTTCAAAAGAATCTTTGCAAGAATCAGATACAAGCGCT----CTGAAGGCTAACGAATCGCATGGACCTTGGTGACGAC
GATGGACGCTGACGCCCAGGCGCCGGAGGCACCGTCGTCGCCGCCGCCGCCCCGGTCCGCCCGGTCGAGGCCGTCGAGCT
GGAGCAGCAGCGGCAGCTCCGAGTACACGAGCCTCCGGGACGTGCTCTCGGAGCTGGGCGGCGGCGGCGGCGGCGGCGGC
AGCTCCTCCGACCTCCACGACTTCGACACCTCCAACATCCCCATCCGCAACCAGCTGCTCAAGCACGCCGCGTCCGCCTA
CCTCCAGTCCGCCATCGTCGTCACGCCGCGCGAAAGGGGCTGCCTCAGCAGGGCCTGGCGCCGCCGCTGCCGCATCCTGC
TCCGGCCGTGCCCCGAGTGCGAGTGCGACGTGGACGTCGACCCCGTTCGCCGCTGCGCCGCGGCGTTGGCCGGCTCGGTG
CGGCGCGTCCTCGCCTCCCTCTGCGGCTGCGTCGCCTGCGTGTGGACGTAGCGCGCACAGGTGCACCGCTGCCCCACGGC
GGCATTGCACGAGACGAGCTGCCATCGTGACATCGTCGCTGCCGTTTGGCCATGCATGCATGCATGCATGCTGATGTTTT
AATTATTACGCTGAACATGACTGCTTCGTGTATGTGCACGTAGGCATGATTTTGCTCTTTGCATTCT-----------GC
G---ATGGTGTCTGATACGAATCATACGATCGTACATATTTAGACGTGGGGCTGTTT-AACTTTAATTTGTTGAAGCTGT
GAATTATTATGGACCCC------TGGCGAACGTTTGCTGTGAGGGGTGGCATTTGCGAATGTTTCTTTTTTCTCTC----
----------TCGCAGTTTATTCAGAGAAGCATGTCATTTTGTTCAAAGATGTGTGATAGTTTCTAGGAAAAAGTAAATT
TTAAGCCAAACAT--GAGCAGAATCTGCCATCGTTTGATCTCGCGTCGTAACTAAAACTGCTAGCAAAATGCGTTT----
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>chr5A_529
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---------------------------------------------------------------------------GAGTA
GCGACGTTGCCCACTACTGTCTACCGGGGCACTCAAATTCAGCTCAGAGAGTGCTCAGGCAGCACTGATATTCTTGTCAT
ATATGCGAGTGCCCATTGGTTTTCAGTTATTATTCCTAT-GGTATCAAAAAACAGTAGTATGTTTTCCCTGTCACGCTGA
TCATGCAGTAGCGTT----GCTATTATTGTCTGTTTCCTTTCATTTGCCAGCTTTGGCCAGGTCCTCC-TACATTTAGGC
ATTGCCGTCAGAAAATAGAAGCACGCTAATCAATCCAAGTGCTTTAACCTCGTTTTCCTTTCCTCCTTATCCCTTTATAT
TTATCAAATCAAATTATAAGGGCATGAGGTTCTGAAACAATCGCCGGGATTGAGATTCCGAGGTTAACAATTGGCGTTGC
TCTTCAAAAGAATCTT-CCAAGAATCAGATCTAAGTGCT----CTGAAGGCTAACGAATCGCATGGACCTTGGTGACGAC
GATGGACACTGACGCCCAGGCGCCGGAGGCACCGTCGTCGCCGCCGCC---CCGGTCCGCCCGGTCGAGGCCGTCGAGCT
GGGGCAGCAGCGGTAGCTCCGAGTACACGAGCCTCCGGGACGTGCTCTCGGAGCTGGGCAA---CGGCGGCGGCGGCGGC
AGCTCCTCCGACCTCCACGACTTCGACACCTCCAACATCCCCATCCGCAACCAGCTGCTCAAGCACGCCGCGTCCGCCTA
CCTCCAGTCCGCCATCGTCGTCACGCCGCGCGAAAGGGGCTGCCTCAGCAGGGCCTGGCGCCGCCGGTGCCGCATCCTGC
TCCGGCCGTGCCCCGAGTGCGAGTGCGACGTGGACGTCGACCCCGTC--------CGCCGCGGCGTTGGCCGGCTCGGTG
CGGCGCGTCCTCGCCTCCCTCTGCGGCTGCGTCGCCTGCATGTGGACGTAGCGCGCACAGGTGCACCGGC----------
------------------------------CATCGTTGCTGCCGTTTGGCAATGCATGC--------ATGCTGATGCTTT
AATTACTACGCTGAACATGACTGCTTCGTGTATGTGCACGTAGGCATGATTTTGCTCTTTGCACTCTTAATTAGATCGCG
ATGCATGGTGTCTGATG---------CGACCGTACATATTTAGACGTGGGGCTGTTTTAACTTTAATTTGTTGGAGCTGT
GAATTATTATGGACTCCAATAGCTGGCGAATGTTCGCTCTAAGGGGTGGCATTTGCAAAAGTTTATGCTGGCGGTTGCTT
GAGAGACGCATGGCATTTTCTTGACAGACGCATGTCAGTTTCTGCGAAGG-------------------------AAATT
TTGAGGCAAAAAAACGAGGAGAACCTGTCATCGTTTGATATCGCGCCGCAACTAACACTTTCAGC---------------
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--------------AAAATTCGTTCGTTTGCCATCCCCTTCCCAGGAAACGTCAGT-AGATAGCATTACGGATTATTATT
GCCTGAGATTCGTTATTGCCCTTGTTAAATCAAATACAAATTGGCGGATCGTGGATGGAGGGCTCATCCTTCTTTTCATT
TAAAGTAATCCGGCTTTAGGACACAAGCGGAGAAGCTTCTCCCCA---CAAAAAAGAGAGGAGGAGAAGCTTCTCATGCC
TTTGGGTGTTAACAATGGAGAAGAAAAGAGTGTGTAAAT---------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------SS
-------------S----------------------------------------S---------------SSSSSSSSS-
---------------------------------------S----------------------------------------
-------------------------------------------------------------------------------S
----------------------S----S-----------------------------------------S----------
-----------S--------------------------------------------------------------------
--------------------------------S----------------------------------S------------
----------------------------S---------------------S----------------------S------
---------------------------------------SSSS-----S-S----S------------------------
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---------------------------------------------S----------------------------------
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--S--------S------------------------------------------------S-------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------------------------------SSS--
---------------------------------------S----------S------------S------------S---
S----------SS--S---------S-----S---S---SS-----------------------S-----S-----S---
------S-------------------S------------S--------------------------------------S-
-S----------S----S-----S--------------------------------S-------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----S-----------------------S---S---------S-----S------S----------
-----------S-----S--S---------------SSS--------------------------S-----SS----S--
S----------------------S---S------------S-S-SSSS----------------------------S--S
-----------------S--S-----SS-----------SSSSSSSSS
>forward_305
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---------------------------------------------GGCTCACTCACTCCACTCAC---------------
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>reverse_2168
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-------CATGTCAGTTTATGCGCGGG-----------------------------------------------------
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