>input_sequence_80062
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------AT-------------------GACGA---TGGCCGCACGCCTGATGCTGGTGGCGGCGCTGCTGTGCGCGGCGG
CCGCGGCCGCCA---CGGCGCAGCAGGCGACCAACGTGCGGGCGACGTACCACTACTACCGGCCGGCGCAGAACAACTGG
GACCTGGGCGCGCCCGCGGTGAGCGCCTACTGCGCGACCTGGGACGCCAGCAAGCCGCTGTCGTGGCGGTCCAAGTACGG
GTGGACGGCGTTCTGCGGCCCCGCCGGCGCCCACGGGCAGGCGGCGTGCGGCAAGTGCCTCCGGGTGACGAACCCGGCGA
CGGGGGCGCAGATCACGGCGAGGATCGTCGACCAGTGCGCCAACGGCGGGCTGGACCTGGACTGGGACACCGTCTTCACC
AAGATCGACACCAACGGGATCGGGTACCAGCAGGGCCACCTCAACGTCAACTACCAGTTCGTCGACTGCCGCGACTAG--
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>chr3D_1_TraesCS3D01G524700
AAACTCTACGTCATGCTTGTTTTGTATTGATTGTGG----GGTACACAGTACAGGATGATCTACCTCGAGATCGTATAAA
TAAGCTTTAGTCTAAAAACCTTGCCTCTACAGACTAAACCCCTCGGCTTATGTAGGCACC-GGGGTATCTAGACTTACAA
GTATGTCAACTACAACTAGGGATAACATGCTGATCATTTAAATACGCCTTGAAGTGTACGCCAAGTCTTCATAGCATTAC
ATCTTGAGTACGCTGCGGGCCAGGGCATGCGTGGCCCATTCTTCGGTCG-----------TCGGCTCTGCCCAACAATGG
CGGGCCGACGTGGTGTAGACCCACTAATTTAGGACACCGTCATCAGG----TGCTTCAGATCTATGAGGAGTTCAACGGT
GATAATTGTGGTTCCAGGGCGCTGGTCCTTAGAGGCATGTGCACGAAGACTTTTCG-GTTGTCTTCACAAGGTCAAGCCA
GCTCAGGTAGGGGAGCGGCGATAGCGGCGCATCACCTGCTCGTTCTGAAGGCAATAGTGGTTGTTGATGGTCTGGGAATC
TCAATGTA-TTTTTTGTTATATTTGAGATGTTTTGTATTTTCGATGAA-TTTTTTAAATAAATCGGATCCTTTTCTTTCC
CG-AGAAAATGAGAACTTGCTCCACGCAGGAGATATTTCTCTTC---TACCATTAATGT----GGCTTGCAACTACAACC
GCACAGATTTGTGGAAAGTGACACTTGCGAGAGCTGACAAGCTAGGTGGCGGAACTACTTGAATTGTACCCACGTGGTTG
TGAGTAGTGCATGCAACTGACTTCCGGTCTGTGGAAAATGCATGGAAGCTTGTAGATTTCCAC-AAGGAAGAGAAGAAAA
GTTATGCCAACATAACATGTGAGACGCCGCGTCCGTCCCTCCCATCTCTATATAAACTCATCATCCGCGAAAGAGCAGTT
CCCATCCCATCCAGTTTCAGCTAGCAACACGT--------------CACAAACACACAAACTAGCTATAGCAGGTTGTCA
CTGATCAT-------------------GACGA---TGGCCGCACGCCTGATGCTGGTGGCGGCGCTGCTGTGCGCGGCGG
CCGCGGCCGCCA---CGGCGCAGCAGGCGACCAACGTGCGGGCGACGTACCACTACTACCGGCCGGCGCAGAACAACTGG
GACCTGGGCGCGCCCGCGGTGAGCGCCTACTGCGCGACCTGGGACGCCAGCAAGCCGCTGTCGTGGCGGTCCAAGTACGG
GTGGACGGCGTTCTGCGGCCCCGCCGGCGCCCACGGGCAGGCGGCGTGCGGCAAGTGCCTCCGGGTGACGAACCCGGCGA
CGGGGGCGCAGATCACGGCGAGGATCGTCGACCAGTGCGCCAACGGCGGGCTGGACCTGGACTGGGACACCGTCTTCACC
AAGATCGACACCAACGGGATCGGGTACCAGCAGGGCCACCTCAACGTCAACTACCAGTTCGTCGACTGCCGCGACTAGAT
TATGTA-TCCGTCGATC-----AAAGGCTAGCTTGCTATGATAAGAATAAGAGGCTAGCT----------TAGCTACGAG
TGAGC--TCAGACTGGTCGATGCTGTTGAATAAAAGCTAGCACGTGATGCTGCATTGTA-------TACGTGTATACAAT
ACGTACATGGAATGAAATAAAGTGGATCAAATCAAACGGGTTATATATTCATGTGTGGATTTTACTACGAGTTTATTATG
AACCAGTT---------------------------------CATATTTTGGATTTGCTAATTCTCA----TCTATATGAA
AACTAACAGTCTCATTTAACTACTACTAGTCTCTCTGTTCCATAATTTTTGTCGTGGTGCCATAATTGTTGTCGTTAAAC
TAAAACCACGATAAGAATTATGAAACGGG--GAGCAGATCATTTGATTA-TCAAACGAAAATGGGCAAGCATTTTCCCCA
TAAAACGAAATGGTGTAGGAGCTAGATGAGAATTCTTTAATCTCGTCTAGAC----------------------------
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--------------------------------------------------------GAGAGCTAGCAACATCGTTAATAT
TTCTCGTCTTTCTCTGCGCTCCTAA-GAAACAGAGGCAGCCGGGTAAAAGCAGTAGTACGTCCAAATCACGTACGTGCAC
CGATTGCACGACTAGTTGGTCAAATTTCTGAAGCTTACGCAGAATTCAAGTAGTAGTAACAACGGAAACAGCCAG----T
CGTACAGTTTGGAGCAGTATTGTTTAGACCACACGCCAGTCGT-------TCATACAGACCGCCGATTCCTTTCATAAC-
AAACTAATCCTGAAGCGTGGAATCGTCAGGTCCGAGAAGCCGGCTTGGGGTTGGGGGAATGCACTAGACCCGTA------
---------------------CGTCATCTTCTTCTGGATGCATGTGGGACGGGTCAAGCTTTCCGGCCCGTCTCTATCCA
AGCCAAAATCCAGCCGATATTTTTCTGGATGCTACTGCGTATTTGCTGTTGGAATTCCACGGCGTGGCCTCAAAAATCTT
GGCGTGATTGATGGCCCCAGGCGTGTAAGGGTGTCATCCTGCTTCAAGATATTGCGGTGGAATTTTG
>chr3B_1
AAACTCTACGTCCTGTTTGTTTTGTATTGATTGTGGATGGGGTACAAAGTACATGATGATCTACCTCGAGATCGTATAAA
TAAGCTCTTGTCTCAAAACCTTGTCTCTATAGCCTAAACCCCTTGGCTTATGTAGGCACCAGGGGTATCTAGGGTTACAA
GTATGCCGACCACAATTATGAT--------------------TACGCCTTGAAGTATACGACAAGTCTTCGGAGGATTCC
ATCTTGAGTACGCTGCTGGCCAGGGCATGCGTGGCCCATTCTTCGGTCG-----------TTGGCTTGGCCCAACAAAGG
TGGGCTGATGTGGTGTAGACCCACTAATCCAGGACACTGTCATCAGG------CTACAGATCTATGAGGAGTTCAACAGC
GATAATTGCGGTTTCAAGGCGTTGGTCCTTAGAGTTACGTGTAAGAAGACTTTCCAAGTTGTCCTAAGAAGGTCAAGCCA
GCTCAGGTAGGGG-GCGGCGACAGCGGCGCATCACCTGCTCGATCTGAAGGCAATAGTGGTTGTTGATGATCTCGGAATC
TCAATGTATTTTTTTGTTATGTTTGAGATGTTTTGTATTTTTGTAACTTTTTTTTTAATAAATCAGATCCTTTTCTTTCC
CG-A-AAAATGAAAACTTGCTGCGCGCAGGAGATATTTTTCTTC---TCGCATTTCATGAACCAGCTTGCAAGTGCAACC
GCACAGATTTGTGGAAAGTGACGCTTGCGAGAGCTGACAAGCTAGGTGGCGGAACTAGTTAAAGAGTACCCACGTGGTTG
TGAGTAGTGCATGCAACTGACTTTCGGTCTGTGGAAAATGCATGGAAGCTTGTAGATTTCCACGAAGGAAGAGAAGAAAA
---ATGCCAACATAACATGTGAGACGCCGCGTCCGTCCCTCCCACCCCTATATAAACTCATCATCGGCGCAAGAGCAGCT
CCCATCCCATCCAGTTTCAGCTAGTAACACAGG--------------------ACACAGAGTAGCT-AGCTAGGTTGTCA
CCGATCACCTAGTGTGGTGGACTCGACGACGA---TGGCGGTAAGGCTGACGCTGGTGGCGGCGCTGCTGTGCGCGGCGG
CGGCGGCGGCGGCGGCGGCGCAGCAGGCGAGCAACGTGCGCGCGACGTACCACTACTACCGGCCGGCGCAGAACAACTGG
GACCTGGGCGCGCCGGCGGTGAGCGCCTAC--------------------------------------------------
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>chr3B_4
---CTCTATGTCCTACTTGTTTTGTATTGATTATGGATGGGATACAAAGTATATGATAATCTACCTCGAGATCGTATAAA
TAAGCTCGAGTAT-AAAACCTTGTCTCTAAAGGCTAAACCCCTCGACTTATGTAGGCACCAGGGGTATCTAGGGTTATAA
GTATGATGACTACAACTAGGGATAACATGCCGATCATTTAAATACGTCTTAAAGTGTACGACAAGTCTTCGGAGGATTCC
ATCTTGAGTACGTTACGAGACAGGGCATGTGTGGCCCATTCTTCGGTCG-----------TCGGCTCTGCCCAACAATGG
TGGACCGATGTGGTGTAGATCCACTGATTCAGGACATCGTCTTCAGGTACCTGCTTTAGATCTATGAGGAGTTCAACGGC
GATAACGGCGGTTTCAGGGCGCTGGTCCTTAGAGGCTCGTGCACAAAGACTTTCCG-GTTGTTCTTAGAAGGTCAAGCCA
GCTCAGGTAGGAAAGCGACGACAGAGGCACACCAACTGTTTGTTCTGAAGGCAATGGTGGTTGTTGATGATCTCGGAATC
TCAATGTAATTTTTTGTTATCTTTGAGATGTTTTGTATTTTTGATGATTCCTTTTTGATAAATCGGATCCTTTTCTTTTG
AAAA-AAAAGAAAAACTTGCTCCACTTCCGAGATATTTTTCTTCCAGTAGCATTCATGGGGCGGGCTTGCAAGTGCAACC
GCACAGATTTTTGGAAAGTGACGCTTGCGAGAGCTGACAAGTTAGGTGGCAGAACTAGTTAACTAGTACCCACGTGGTTG
TGAGTAGTGCATGCAACTGACTTTCGGTCTGTGGAAAATGCATGGAAGCTTGTAGATTTCCACGAAGGAAGAGAAGAAAA
---ATGCCAACATAACATGTGAGACGCCGCGTCCGTCCCTCCCACCCCTATATAAACTCATCATCC--------------
------------AGTTTCATCCAGCAGCAAATCCAAGACACACACACACACACACACAAACTAGCT-TAGCAGGTTGTCA
CTGATCACC----GTGGTCGACGAGAAGACGACGATGGCGGTAAGGCTGATGCTGGTGGCGGCGCTGCTGTGCGCGGCGG
CGGCGGCGGCC---GCGGCGCAGCAGGCGAACAACGTGCGCGCGACGTACCACTACTACCGGCCGGCCCAGAACAACTGG
GACCTGGGCGCGCCGGCGGTGAGCGCCTACTGCGCGACCTGGGACGCCAGCAAGCCGCTGTCGTGGCGGTCCAAGTACGG
GTGGACGGCGTTCTGCGGCCCCGCCGGCGCCCACGGGCAGGCGGCGTGCGGCAAGTGCCTCCGGGTGACGAACCCGGCGA
CGGGGGCGCAGGTGACGGCGAGGATCGTGGACCAGTGCGCCAACGGCGGGCTGGACCTGGACTGGGACACCGTCTTCACC
AAGATCGACACCAACGGGGTCGGGTACCAGCAGGGCCACCTCAACGTCAACTACCAGTTCGTCGACTGCCGCGACTAGAT
GAAATG---------------AAAGGGTAAGCAAGCTATGATAAGAATAAAAGGCTAGCTAGTAGCGGGCTAGCTACGAG
TGAGCACTGAGACTGATCCATGCTGTTGAATAAAAGCTACCACGTGTTGCTGCATTGTA-------TACGTGTATACAGT
ACGTACATGGAAGGAAATAAAGTGGATCGTT----------------TTCATGTTTGGATTTTACTACAAATTTATTATG
AACCAATACATGGGCGGATTTGGGCCCCAGGCAGCCCAGGCCATATTTCGAATTTGCTAACTCTCGTACGTCTATATGAG
AACTAACAAAGCCTCAT--------------------------------------------------------------C
TAAAACCACAACACGAATTATCAAACGGACAGAGTAGATCATTTGATTAATCTAACAATAAAGAGCTAGCATTTCCATGG
-AAAACCAAATGGCGTCGGAGCTAGATGAGAATTCCAGAATTCTTTAATTCTCATTTACTCCATCTGTCCCAACGTAATT
CATCTTTTCAAACTACATTAGTGTAAAAAAAAGTATTACTTCCTCTGTCTCAAAATAAGTGATTCAACTTTGTAGTGACT
TTGTATTAAAGTTAGTACAAACTTAAGTCATTTATTTTGGGACTGAGGGAGTAGATGAGAGCTAGGAACACCGTTAATGT
TTCTGGTCTTTCTCTGGCGCTTCTGTGAAACAGGGGCAGCCGGATAAAAGCAGTAGTACGTCCAAATC----ACGTGCAC
CGATTGCACGACTTGTTGGTCAAATTTC-----------------------AGTAGTAACAACGGAAACAGCCAGCCAGT
CGTACAGTTTGGAGCAGTATTGTTTAGACCACACGCCAGTCGTTCACAAATCACAGAGACCGCCGATTCCTTTCATAACA
AAACTAATCCTGAAGCGTAGAATCGTCAGGCCCGAGCAGCCGACTTGGGGTTGGGGGACTGCACCAAGACGTCGCTCTGG
AGATATTGATCTTACTAGACCCGTCATCTTCTTCTGGATGCATATGGGGCGGGTCAAACTTTGCGGCCCGTCTCTATCCA
AGCCAAAATCCAGCTGAATTTCTTCTGGATGCTACTGCGTATTTGTTGTTGGAATTCCACGGCATGGCCTCAGAAATCTT
GGCGTGATTGAAGGGCCCAGGCGTGCAA-GGTGCCACCCTGCTTGAAGATATTGCGGTGGAAATTTG
>chr3A_171
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---------------CTAGGGATAACATGCCGATCATTCAAAAACGCCTTGAAGTGTACGACAAGTCTTCGGAGGATTCC
ATCA----TACGCTGCGGGCCAGGGCATGTGTGGCCCATTCTTCGGTTGTCGGTGGGTCCTCGGCTCGGCCCAACAATGG
CGGGCTGATGTGGTGTAGACCCACTAATCCAGGACACTGTCATCAGGT----GCTTCAGATCTATGAGGAGTTCAACAGC
GATAATTGCGGTTCCAGGGCGTTGGTCCTTAGAGACACGTGCACGAAGAC-TTCCG-GTTGTCCTCAGAAGGTCAAGCCA
GCTCAGGTAGGGGAGCAACGACAGCGGCACATCACCTGCTCGTTCTGAAGGCAATAGTGGTTGTTGATGGTCTCGGAATC
TCAATGTA-TTTTTTGTTATGTTTGAGATGTTTTGTATTTTTGATGATTCTTTTTTAATAAATCGGGTCCTTTTCTTTCC
CG-A-AAAATGAAAACTTGGTCGATGACTGAGATATTTCTCTTC---TACCATTCATGT----GGCTTGCAACTGCAACC
GCACAGATTTGTGGAAAGTGACACTTGCGAGAGCTGACAAGCTAGGTGGCAGAACTAGTTAAAGAGTGCCCACGTGGTTG
TGAGTAGTGCATGCAACTGACTTCCGGTCTGTGGAAAATGCATAGAAGCTTGTAGATTTCCAC-AAGGAAGAGAAGAAAA
GTCATGCCAACATAACATGTGAGACGCCGCGTCCGTCCCTCCCACCTCTATATAAACTCATC---GGCGAAAGAGCAGTT
CCCATCCCATCCAGCTTCAGCCAGCAGCAAGTCCAAT------ACACACACCCACACAAACTAGCT--AGCAGGTTGTGA
CTGATCACC----GTGGTCGACGAGACGACGA---TGGCCGCACGCCCGATGCTGGTGGTGGCGCTGCTGTGCGCGGCGG
CGGCGGCGGCCA---CGGCGCAGCAGGCGACCAACGTGCGGGCGACGTACCACTACTACCGGCCGGCGCAGAACAACTGG
GACCTGGGCGCGCCCGCGGTGAGCGCCTACTGCGCAACCTGGGACGCCAGCAAGCCGCTGTCGTGGCGGTCCAAGTACGG
GTGGACGGCGTTCTGCGGCCCCGCCGGCGCCCACGGGCAGGCGTCCTGCGGCAAGTGCCTCCAGGTGACCAACCCGGCGA
CGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAACGGCGGGCTGGACCTGGACTGGGACACCGTCTTCACC
AAGATCGACACCAACGGGATCGGGTACCAGCAGGGCCACCTCAACGTCAACTACCAGTTCGTCGACTGCCGCGACTAGAT
TACGTTCTCCGTCGATCGATCAAAGGGCTAGCTAGCTATGATAAGAATAAAAGGCTAGCTAAA---------------AG
TAAGT--TGAGACTGATCCATGCTGTTAAATAAAAGCTAGCACGTGATGCTGCATTGTATACGTGTTACGTGTATACAGT
ACGTACATGGAACGAAATAAAGTGGAACAGACCAAACGGGTTATCTATTCATGTATGGATT-------------------
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>SNPs
------------S---------------------------------S------S--------------------------
------S------S---------S-----S--S---------------------------------------SS------
-----S-S----------------------S-----------------------------S---------SS--S---S-
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--------S--------------------S-------------------------------------------------S
--------S----------------------------S---------------S---------S---S------------
---------------------S---------------------------------------------------S------
--------------------S--------------------S-----S-------S------------------------
----S-------S-----------------------------------------S-------------------S-----
---------------------------------------------------------S--S---S---------------
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--S-----------------------------------------S-----------------------------------
--------------------------------------------------S---------------S-------------
-------S------------------------------------------------------------------------
-S-----S------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
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--S--S------------------S--------S----------------S-----------------------------
--------S------S--S-----------------------------------------------------------S-
------------S----------------S-S------------S---------S-------------S-S---------
-----S-S----------------------------------------S-S---------S----S-------------S
--------SSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
---------S-S-S-------S------S-----S-----------------S---S-S--S-S--S-------S-SSSS
S-----S------S--S------------------SSS---SSSS-SSSSSS----------------------------
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-----------------------------------------------------------------S----S-------S-
----S-----------SSSSSSSSS--------S---------S------------------------SSSS--------
-------------S--------------SSSSSSSSSSSSSSSSSSSSSSS-----------------------------
-----------------------------------------------------S-S------------------------
------------------S-----------S-----S-----S---------------S-----S-SSS-SSSS------
-------------------------------------------S----S--------S----S-----------------
--------------S--SS--S-----------------------S-----------------S--------S-------
-----------S--S----------S--S----S--S-------S-----------------S----
>forward_154
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------------------------------------------------------AGGCACCGGGGTATCTAGAC------
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>reverse_2263
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----------------------TAAGAAACAGAGGCAGCCGG--------------------------------------
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