>input_sequence_80047
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ATGTTCCTCAGCAAGTCTCCGCACCAGGACG---TTTACCTCTGGCTGTCGCACAACAACCTCACTGGGCCCATCCCGGC
AGACTTCGGCGCCGTGAATTTCACGCACCTCGACCTGTCGCGCAACGACCTGACCGGCGACGCGTCGGGCCTCTTCGGCC
GCGGGAAGGAGCTGCAGTACATCGACCTGTCCCGCAACACCTTCTATTTCGACCTCTCAGGCGTGGTG---CTCCCGGAG
CGGCTCTACTTCGTCGATGTGAGCCACAATGCCATCCAAGGCAGCATCCCGGCGCAGGTCGCGAGCATGTCCAACCTGAA
CTTCTTCAACGTCAGCTACAACAGGCTCTGCGGCCCTGTGCCCGCCGGCGGTAACATGGCGAGGTTCGATCTCTACAACT
TTCAGCACAACAAGTGCCTCTGTGGTGCTCCCCTCCCTTCATGCAAGAAATAG---------------------------
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>chr3A_1_TraesCS3A01G459300
AAGTAGAGATTGAATACATGCAATTATACTTGTTAGAAAGGCAGCGTGTTGAACAATTGCATGAATTTTTTCCAAAAAAA
AAAAGAATCCATGCAATTGTACTGGTCAGAGAGGCAGCGTGTTGGACACTTTGACCAGTCGTCCATTTGGTGCCGATTTG
CCAAACACATCGCATGTGAGGGGTAAAAGCTAGCTGTATTAACTCTGTATTATATGCACCTTATTCT----------TGA
TGTGATCCATGTTTGGTCTTCTTCTCTGACTAGTTAGATACCACTCCATTACACTAGGAGTATGCTGCAATGCTTAGGAG
TAGGTCCAAGTGCATTAGTTAAGC-GTACAAATATGCAGCATGGGACGG----------AGAC-GAGGATG---------
GAAGTGGACACGCATAGCATCAAAGCTACACACACAGACACAGCCGACAGGATGAGGATCCACTCACCCGCTCTGCTCGT
CCTCCTCCTCTGCTCTC---------TCCTCGCCGGCGCGGCCAACGCCGAGCCCTCTCCGGAACCAACGTACAAGGACT
GCCACCCAGGCGACAAGGCGGCGCTGCTCGCCGTCAAGGCCGCCTTCGGGGAGGCCTATGACTTCGCGTCCTGGAAGCCC
GACAACCCCTGCTGCGACTGGTAGGACGTCACCTGCGACCGCTTCACCGGCCGTGTCGTCGGCCTCGCCATCTTCCAGGA
CGCCAACCTCACGGGCACCATCCCCACCGCCCTTGCCGGCCTCCTCCACCTGGAGGACCTCACCCTGCGCCACCTCCCGG
GGCTCTCGGGCCCCATACCGCCGGCCATCGGCAAGCTCTCCAACCTCTCCAGCCTCCGCATCTCCTGGACGGCCGTGTCC
GGCCCAATGCCGTCCTTCCTGGGCGCACTCAAGAAGCTCAACTTCCTCGATCTCTCCTTCAACTCTCTAAGCGGCGCCAT
CCCGGCGTCGCTGGGGACCATCCCCAATCTGCGCGGCATCAACCTCAGCCGCAACCGCCTCACCGGCGACATCCCCCCCG
ATGTTCCTCAGCAAGTCTCCGCACCAGGACG---TTTACCTCTGGCTGTCGCACAACAACCTCACTGGGCCCATCCCGGC
AGACTTCGGCGCCGTGAATTTCACGCACCTCGACCTGTCGCGCAACGACCTGACCGGCGACGCGTCGGGCCTCTTCGGCC
GCGGGAAGGAGCTGCAGTACATCGACCTGTCCCGCAACACCTTCTATTTCGACCTCTCAGGCGTGGTG---CTCCCGGAG
CGGCTCTACTTCGTCGATGTGAGCCACAATGCCATCCAAGGCAGCATCCCGGCGCAGGTCGCGAGCATGTCCAACCTGAA
CTTCTTCAACGTCAGCTACAACAGGCTCTGCGGCCCTGTGCCCGCCGGCGGTAACATGGCGAGGTTCGATCTCTACAACT
TTCAGCACAACAAGTGCCTCTGTGGTGCTCCCCTCCCTTCATGCAAGAAATAGATGGAA---------------------
TTAT----------------------------------------------------------------------------
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-------------------------------------------------------------CTGGTGGGTTTGGCAGAAT
AAT------------GCTATTTTCTATGTCAATCAATTCGACTAATGTC---GCCCTGGAATAAGAGTTATGCAGAAATA
AAGTCAAGATGGCTATG--TGTGGCGATGAAGTTGTCAGCTAGATTTAGCACTTCCTGTGTTTTAACTGTCCGACATCAT
GATTCATCTG-------GTGTATGC-AAAGATCCTTGATGGTTTGACCAAAGTCAGGTTAATTTCCTTTATTTTTTTTAC
AATAGCTATATGTAAGTTGACCGAATTTACAATTAGGATAAGTCAGTTTTATGCGAGGAGGGACGATTGGAGAAGAAGAA
AGATGAAGAAGAAATAGAAGGACAGTCGTTGGATGTTGTATCTTAATCTAAAGGCCCAGAAAACCGACTTCCCCAAAATT
AATTTTCAGACGACTTACATATAGTCGGCCCTTTTTTTCCGAGGAAATAGTATAGATTTCACCTCTCAACTTCTGTTGAA
CTACACATTTCAATTCTTCTATACTTCTCCGATACTTTAGACCTTCAACTCGCACCTAGCAGTGTTTTTGTGCAGTCATG
GCCCCTTAGATGGTTTTTATCGCCCTCTGATCAAAATCGAACATTAATCTAGTCGATAGTGACATACTCAGACCCTTCTT
TCCAAATGAGAACCATATTCTTTTTTTCCCGCAAAAGAAAGGAAAACCATTTTACACAGAAGTGCCATCGTCAATACACA
TTTCACTATTATTTTATCATGAGACTACAAACAAGGTGATAAGTTTACCAAAATGACTAAGAAGATATGTACAAGTGCCC
GCTTCCTTCCCTCTTTTCCCAAATGCACGCAACCTTGATCAGTCCTTTCTATGGTTGTTTTTTTTTTGCGGGGAAATACT
TTGTATTACTCAAATAGTAGGATTACACTCAACATGACATTGTTCGACGACCTCATCAGGTCCTGATGAGTTATTTACCC
AAAACCACCACATTTAAGGCTAGGGTAACAACTTGA
>chr3D_1
AAGTAGAGATTGAATATATGCAATTATACTTGTTAGAAAGGCAGCGTGTTGGACAATTGCA------------------A
AAAAAAATTCATGCAATTGTACTGGTCAGAGAGGCAGCGTGTTGGACACTTTGACCAGTCGTCCATTTGGTGCCGATTCG
CCAAACACATCGCATGTGAGGGGTAAAAGCTAGCTGTATTAACTCTGTATTATATGCACCTTATTCT----------TGA
TGGATCCG-TGTTTGGTCTTCGTCTCTGACTAGTTAGATACCACTCCATTACACTAGGAGTATGCTGCAATGCTTAGGAG
TAGGTCCAAGTGCATTAGTTAAGC-GTACAAATATGCAGCATGGGACGG----------AGACGGAGGATG---------
GAAGTGGACACGCATAGCATCAAAGCCACACACACAGACACAGCCGACAGGATGAGGATCCACTCACCCGCTCTGCTCGT
CCTCCTCCTCTGCTCTC---------TCCTCGCCGGCGCGGCCAACGCCGAGCCCTCTCCGGAACCGACGTACAAGGACT
GCCACCCAGGCGACAAGGCGGCGCTGCTCGCCTTCAAGGCCGCCTTCGGGGAGGCCTACGACTTCGCGTCCTGGACGCCG
AACAACCCCTGCTGCGACTGGTATGACGTCACCTGCGACCGCTTCACCGGCCGTGTCATCGGCCTCGCCATCTTCCAGGA
CGCCAACCTCACGGGCACCATCCCCACTGCCCTGGCCGGCCTGCCTCACCTGGAGGACCTCACCCTGCGCCACCTCCCGG
GTCTCTCGGGCCCCATACCGCCGGCCATCGGCAAGCTCTCCAACCTCTCCAGCCTCCGCATCTCCTGGACGGCTGCCTCG
GGGCCCGTGCCGTCCTTCCTGGGGGCGCTCAAGAAGCTCAACTTCCTCGATCTCTCCTTCAACTCGCTCAGCGGCGCCAT
CCCGGCGTCGCTGGGGACCATCCCCAACCTGTCCGGCATCAACCTCAGCCGCAACCGCCTCACCGGCGCCATC-CCCCCG
ATGTTCCTCAGCAAGTCTCCGCACCAGGACG---TTTACCTCTGGCTGTCGCACAACAACCTCACAGGGCCCATCCCGGC
AGACTTCGCCGCCGTGAATTTCACGCACCTCGACCTGTCGCGCAACGACCTGACCGGCGACGCGTCGGGCCTCTTTGGCC
GCGGGAAGGAGTTGCAGTACATCGACCTATCCCGCAACGCCTTCGATTTCGACCTCTCAGGCTTGGTG---CTCCCGGAG
CGCCTCTACTTCGTCGATGTGAGCCACAATGCCATCGATGGCAGCATCCCCGCGCAGGTCGCGAGCATGTCCAACCTGAA
CTTCTTCAACGTCAGCTACAACAGGCTCTGCGGCCCTGTGCCCGCCGGCGGTAACATGGCGGGGTTCGATCTCTACAACT
TTCAGCACAACAAGTGCCTCTGCGGTGCTCCCCTCCCTTCATGCTAGAAGTAGATGGAA---------------------
TTAT----------------------------------------------------------------------------
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-------------------------------------------------------------CTGGTGGATTTGACAGAAT
AAT------------GCTATTTTCTCTGTCGATCAATTCGACTAATGTC---TCCCTGGATTAAGAGTTATGCTGAAATA
AAGTCAAGATGGTTATG--TATGGCGGTGAAGTTGTCAGCTAGATTTAGCACTTCCTCTGTTTTAACTGTCCCACATCGT
-ATTCATCTC-------GTGTATGC-AAAGATCCTTGATGGTTTGACCAAGGTCAGGTTAATTTCCTTTA--TTTTTCAC
AATAGCTATATGTAAGTTGACCGAATTTACAATTCGGATAAGTCAGTTTTATGCGAGGAGGGACGATTGGAGAAGAAGAA
AGATGAAGAAGAAATAGAAGGACAGTCGTTGGAT-------CTTAATCTAAAGGCCCAGAAAACCGACTTTCCCAAAATT
AATTTTCAGACGACTTACGTATAGTCGGCCCTTTTTTCCCGATGAAATAGTATAGATTTCACCTCTCAACTTCTGTTGAA
CTACAAATTTCAATTCTTCTATACTTTTCCGGTACTTTAGACCTTCAACTCGCACCTAGCAGTGTTTTTGTGCAGTCATG
GCCCCTTAG-----------------------------------------------------------------------
---------------------------------------------ACCATTTTACACAGAAGTGCCATCGTCAATACACA
CTTCACTATTATTTAATCATGAGACTACAAATAAGGTGATAAATTTACCAAAATGACTAAGAAGATATGTACAAGCGCCC
GCATCCTTCCCTCTTTTCCCAAATGCACGCAGCCTTGATCAATCCTTTCTATGGTTGTT---------------------
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>chr3B_90
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---------CATGCAATTGTACTGTTGAGAGAGGTAGCGTGTTGGAC--------CAGTCGTCCA----GTGCCGATTCG
CCAAACACATCGCATGTGAGGGGTAAGCTAG-------------CTGTATTATATGCATCTTATCCTCAGCTCTTCTTGA
TGGATCCAT--GTTTGGCTTCTTCTCTGACTGGTAAGATACCACTCTTCAATGCTCATT------------------GGG
TAGGTCCGAGTGCATCGACGAGTCTGCACATATATGCAGCATGGGACACACGAAGACGAAGACGGAGGGCGCAGCACACC
CAAGTGGACTCCCATCACATCAAAGC--CACACACACACACAGCCGACAGGATGAGGATGCGCTCACGCGCTCTGCTCGT
CCTCCTCCTCTGTTCTC---------TCCTCGCCTGCGCGGCCAACGCCGAGCCCTCTCCGGACCCGACGTACAAGGACT
GCCACCCAGGCGACAATGCGGCGCTGCTCGCCGTCAAGGCCGCCCTCGGGGAGGCCTACCACTTCGCGTCCTGGACGCCC
GACAGCCCCTGCTGCGACTGGTACGACGTCACCTGCGACCACTTCACCGGCCGCGTCGTCGGCCTCGCCGTCTTCCAGGA
CGCCAACCTCACGGGCACCATCCCCAGCGCCCTCGCCGGCCTCCCCCACCTGCAGGACCTCACCCTGCGCCACCTCCCGG
CGCTCTCGGGCCCCATACCGCCGGCCATCGGCAAGCTCTCCAACCTCTCCAGCCTCCGCATCTCCTGGACGGCCGTGTCG
GGCCCCGTGCCGTCCTTCCTGGGCGCGCTCAAGAAGCTCACCTTCCTCGAGCTCTCCTTCAACTCGCTCAGCGGCGCCAT
TCCGGCGTCGCTGGGGACCATCTCCAACCTGTCCGGCATCAACCTCAGCCGCAACCGCCTCACCGGCGCCATC-CCCCCG
ATGTTCCTCAGCAAGTTTGCGGAC---CAGG---TCTACCTCTGGCTGTCGCACAACAACCTCACGGGACCAGTCCCGGC
CGGGTTCGCCTCCGTGAACTTTGCGCACCTCGACCTGTCGCGGAACGACCTGACCGGCGACGCGTCGGGCCTCTTGGGCC
GCGGGAAGGAGTTGCAGTACATCGACCTGTCCCGCAACGCCTTCGATTTCGATCTCTCAGGCGTGGTG---CTCCCGGAG
CAGCTCTACTTCGTCGACGTGAGCCACAATGCCATCCATGGCAGCATCCCGGCGCAGGTCGCCAACTTGTCCAACCTGCA
GTTCTTCAACGTCAGCTACAACAGGCTCTGCGGCCCCGTGCCGACCGGCGGGACCATGGCGAGGTTCGATCTCTACAACT
TTCAGCACAACAAGTGCCTCTGTGGTGCTCCCCTCCCTGCATGCAAGAAATAGATACAACTGTCCGCTGGACATGAAACA
TTAT----------------------------------------------------------------------------
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-------------------------------------------------------------CAGGTGGGTTTGGCAGAAT
GAT------------GCTATT-TCTGTGTCGATCAACTCGACTAATGTC---TCTCTGGATTGAGAGTTGTGCTGAAATA
AAGTCAAGATGGTTATG--TATGGCGGTGAAGTTGTCAGCTAGATTTAGCACTTCCTCTGTTTTAACTGTCTCACATCAT
GATTCATCTG-------TTGTAGGGGAAAGATCCTTG-------------------------------------------
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>chr3D_240
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---------TGGTTGGTCTTCTTCTCTGACTAGTTAGATACCACTCCAATATATAGATGCTTC-----------------
--------AGTGCATCGATGAATCTGTACATATATGCACCATGGGGCACACAGAGACGCT------GGGTGCAGCACACC
GAAGTGGACTCAAATCACATTAAAGC--------CACACACAGCCGACAAGATGAGGATGCACTCACACGCCTTGCTCGT
CGTCCTCCTCTGCTCTC---------TCCTCGCCGGCGCGGGCAACGCCGAGCCCTCTCCAGACCCGACCTACAAGGACT
GCCACCCGGGCGACAAGGCGGCGCTGCTCGCCTTCAAGGCCGCCCTCGGGGAGCCCTACCACTTGTCGGGGTGGACATCC
GACAGCCCCTGCTGCGACTGGAACGGCGTCACCTGCGACCACTTCACCGGCCGCGTCGTCAGCCTCGCCGTCTTCCAGGA
CGCCAACATCACGGGCACCATCCCCAGCGCCCTCGCCGGCCTCCCTCACCTGCAGGACCTCACCTTGCGCCACCTCCCAT
TGCTGTCGGGCCCTATACCGCCGGCGATCGGCAAGCTCTCCAACCTCTCGAGCCTCCGCATATCCTGGACGGCCGTGTCG
GGCCCCGTCCCGTCCTTCCTGGGCTCGCTCAAGAAGCTCACCTTCCTCGAGCTCTCCTTCAACTCGCTCACCGGCGCCAT
CCCGGCGTCGCTGGGGACCATCCCCAACCTGTCCGGCATCAACCTCAGCCGCAACCGCCTCACCGGCGCCATC-CC---G
ATGTTCCTCAGCAAGTCTGCGGAC---CAGG---TCTACCTCTGGCTGTCGCACAACAACCTCACGGGGCCCCTCCCGGC
CGGGTTCGCCGCCGTGAACTTCGCGCACCTCGACCTGTCGCGGAACGACCTGACCGGCGACGCGTCGGGCCTCTTCGGCC
GCGGGAAGGAGTTGCAGTACATCGACCTGTCCCGCAACGACTTTGATTTCGACCTATCGGGCGTGGTG---CTCCCGGAG
CAGCTCTACTTCGTCGACGTGAGCCACAATGCCATCCATGGTAGCATCCCGGCGCAGGTCGCCAACTTGTCCAACCTGCA
GTTCTTCAACGTCAGCTACAACAAGCTCTGCGGCCCCGTGCCGACCGGCGGTAACATGGCGAGGTTAAATCTCTACAACT
TCCAGCACAACAAGTGCCTCTGCAGTGCTCCCCTCCCTCCATGCAAGAAATAGATAGAA---------------------
ATACAACAAATGACTTTGACAGAGTAACGAGATGTTGGTATTGCCATGTCGATCAATTCGACTGTACATTGATGTCTCTC
TGGATTAAGAGTTGTGCTGAAATAAAGTCAAGATGATTATGCTTTCCACCAGTGTAGCAGTGAATTTATAGATATACTGT
GTCGAACTAACATGGTCTTTCTATACCATTGAAAAATGCACACTTTTAATAAGCATCATGTTGGACACTTTCCCTGTCAA
ACATGCATGCATGGACTGATGAACACATAGAAACACCAAGAGTTGATGATGATGTTCATGTCGCTACTGACGGCATGTGG
GTTGGATGCAGCCATTGTGGTGAATTATTCCTCGTTGAATCCGTTTGCACGCGTCAGCGAGGAGCAAATGCAGCATGTTT
GACCAGTCATCCAGTTGGCACTGCCACTTCGCCAAACACATTACTTGCGAGGGGCGAAAAAACGCCACCCAACCCGAGCT
GGCAAACTCGGCCCAAACGTCCGGACTGACCGGCACCCCTATATCCAGCTCATATATATGTGGGACGGATATACAGACGC
TCAGACGCATTTGGACGCGTCCGACACGTCTTCTTGATGAATGGGGCCGAGCTAAAACCCGTAGAGGTCCAACGGGCGCT
TCCTCCGGTTTAGGTGAGGACCGTCTGCTTCGCTGTACCACCCAAGGAACCAAGTCCGGCTATTTAAGTCGGACGGCAAG
GTAACCCTAGCCTCGTCCCATTCTCACCCCTCTCGGTCGCGCCACTGCTTCCCCCTCCTCTCCCTAGTCCACTTCGAACC
GAGGTATGCCGATGCTGCCATGGTCCACAGCAAGATTACCTACTACAACTTATTGACTCCTGAGCTCCAAGCGGAGATCC
AGACGGCTACAACAGGCTCTGCACAACTTTCAGCACAACAAGTGCCTCTGCGGTGCTCCCCTCCCTCCATACAAGAAATA
GATAGAAATACAACAAGTGACTTTGATAGAGTAATAACGAGATGTTGGTATTGCCATGTCGATCAATTCGACTGTACATT
GATGTGTCATATGTATGGAGAACACATTTTACTCATTTCAAATATTGGTCCTCAATTTAAAAAAAAACTTCTACTTCAGG
AAACTACTTTCCCTAATTTCTAAAAACTATCACCTTAGAAAAACAATTTCACTCATTTCAGAAAACACATTGCGCTCATT
TTGCAAAACTAATTTTACTGCGGATTTACGAAATATATTGAAACGTACTTCACTCATCACAAATATCAATTTCCAACATT
GAAAAATTCAGTTTCACACAAAATATTGGTTATATTCCACTTTTTGCAAATACCTTATTTCACTTATTTCAGAAAACACA
TTACACTCACTCAATTAAAATACTATATTTCACTTGTTTCTGTCGCTACTAACGGAATGTGGGGTGGATGCTTCCATTGT
GATGAATTGTCGGCGAGTCAGCAAATATGCAGCATGTTTGACCAGTCGTCGAGCGACCAGTCGGCAGTGCCACTTCGCCA
AACACATCGCTTGCGACCAGTCGGCAGCTGTAGTCTGTAGAATGTAGATGCATCTTATCCTCAGCTGATCTTCTTGGTGG
ATCCATGGTTGGTCTTCTTCTCTGACTAGTTACATAATACCACTACAAAAGTAGGTGGTCCGAGTGCATCGACGATCCAG
TCTGTATACATATATGCACACAGAGACGTAGGGCGCAGCACACCCAACTGGACTCACATCACATCGAAGCCACACTCAGC
CGACAGGATGAGGATGCACTCACACGCTTTGTTCGTCCTCCTCCTCTGCTCTCTCCTCGTCGGCGCGGCAACCGCCGAGC
CCTCTCGGGAGCTTACTTACAAGGATTGCCACCCTGACGACAAGGCGGTGCTGCTCGCCTTCCCGGACTCCTGGTCCTCG
TCATGGGCGCCCGACACACTCTGCTGCGACTGGTTCGCCGTCGCCTGCGACCGCTCCACCGGCCGCGTCGTGGGCTTCTC
CGTCTTCCAGGACCCCAGCTTCACGGGCACCATCCCCAGCACCATTGCCGGTCTCACCCACCTGGAGGACCTCTTCCTGC
ACCACCTCCCGGGGCTGTCGGGCCCCATACCGCCGGCGATAGGCAAGCTCGCCAACCTCTCCAGGCTCGAAATCTCATGG
ACGGGGGTGTCTGGCCCCGTGCCGTCCTCCCTGGGCAAGCTCAAGAAGCTCACCCAGCTCGACCTCTCCTTCAACTCGCT
CAGCGGCGCCATCCCGGTGTCGCTGAGGACCATCCCCGGCATCACCCTCAGCCGCAACCGCCTCAGCGGCGCCATCCCCC
AGATGTTCCTCAGCGAGTCCGCGGGCCAGGACGTCTACCTCGACGTGTCGCACAACAACCTCACCGGTGCCATCCCGGCC
GCGTTCGCCGCCGTGAACTTCACGCACCTCGACCTCTCGCGCAATGGCCTGACCGGCGACGCGTCGGGCCTCTTCGGGCG
CGGCAAGGAGCTGCAGTACATCGACCTGTCCCGCAACGCCTTCGATTTCGACCTGTCAGGCGTGGTGGTGCTCCCGGAGA
AGCTCTTCCACCTGGACCTGAGCCACAATGCCATCCATGGCAGCATCCCGGCGCAGGTCGTGGACGTGGCCAACCTGCTG
GCCTTCAACGTCAGCTACAATAGGCTCTGCGGCCCCGTGCCGACCGGCAGGAACATGGCGAGGTTCGATCTCTACAACTT
CCAGCACAACAAATGCCTCTGCGGTGCTCCCCTCCCTCCGTGCAAGAAATGAAGGAATTATCTGGTGGATTTGACAGAAT
AA----CGAGATGGTGGTATT-CATATGTCGACCAATTCGACTGTATTGATGTCTCTGGATCAAGAATTGTGCTGAAATA
AAGTCAAGATG---------------------------------------------------------------------
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>chr3B_370
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GAAGTGGACTCACATCACATCAAAGC--------CACACTCAGCCGGCAGGATGAGGATGCACTCACATGCGCTGCTCGT
CCTCCTCCTCGGCTGTC---------TCCTCGCCGGCGCGGCAACCGCCGAGCCCTCTTGGGAGCTTACTTACAAGGATT
GCCACCCCGACGACAAGGCGGTGCTGCTCGCCTTCCCGGAGTCCTGGTCCT---------------CGTCATGGGCGCCC
GACACACCCTGCTGCGACTGGTTCGCCGCCGCCTGCGCCCGCTCCACGGGCCGCGTCGTGGGCTTCTCCGTCTTCCAGGA
CCCCAACTTCACGGGCACAATCCCCAGCGCCATAGCCGGTCTCACCCACCTGGAAGACCTTTTCCTACACCACC-CCCGG
GGGTATCGGGCCCCATACCGTCGGCGATAGGCAAGCTCACCAACCTCTCCAGGCTCGAAATCTCATGGACGGCCGTGTCG
GGCCCCGTGCCGTCCTCCTTGGGCAAGCTCAAGAAGCTCACCCAGCTCGACCTCTCCTTCAACTCGCTCAGCGGCGCCAT
CCCGGTGTCGCTGGGCGCCATCC---------CCGGCATCACCCTCAGCCGCAACCGCCTCAGCGGCGCCATC-CCCCAG
ATGTTCCTCAGCGAGTCCGCCGGCCAGGACG---TCTACCTCGACGTGTCGCACAACAACCTCACCGGCCCCATCCCGGC
CTCGTTCGCTGCAGTGAACTTCACGCACCTCGACCTCTCGCGCAACGCCCTGACCGGCGACGCGTCCGGCCTCTTCGGGC
GCGGGAAGGAGCTGCAGTACATCGACCTGCCCCGCAACGCCTTTGATTTCTACCTGTCAGGCGTGGTGGTGCTCCCGGAG
AAGCTCTTCCACCTGGACCTGAGCCACAATGCCATCCATGGCAGCATCCCGGTGCAGGTCGCGAACGTGGCCAACCTGCT
GGCCTTCAACGTCAGCTACAACAGGCTCTGCGGCCCCGTGCCGGCCGGCGGGAACATGGCGAGGTTTGATCTCTACAGCT
TCCTGCACAACAAGTGCCTCTGCGGTGCTCCCCTTCCTCCGTGCAAGAAATAGATGGAT---------------------
TTAT----------------------------------------------------------------------------
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-------------------------------------------------------------CTGCCGGGTTTGACAGAAT
AA----CTAGATGTTGATATT-CATATG---------TCGACTGTATTGATGCCTCCGGATTAAGAATTGTGCTGAAATA
AAGTCAAGATGATTATATATAGAGAGGTGAAGTTGCCGGCTAGCTTTGATACTTCCTCTGTTTT----------------
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>chr3A_371
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-AAGTGGACTCCCATCACATCAAAGC------CACACACACAGCCGACAGGATGAGGATGCGCTCACGCGCTCTGCTCGT
CCTCCTCCTCTGCTCTC---------TCCTCGCCGGCGCGGCCAACGCCGAGCCCTCTCCGGACCCGACGTACAAGGACT
GCCACCCAGGCGACAAGGCGGCGCTGCTCGCCGTCAAGGCCGCCCTCGGGAACGCCTACCACTTCGCGTCGTGGACGCCC
GACAACCCCTGCTGCGACTGGTACGACGTCACCTGCGACCACTTCACCGGGCGCGTCGTCGGCCTCGCCGTCTTCCAGGA
CGCCAACCTCACGGGCACCATCCCCACCGCCCTCGCCGGCCTCCCACACCTGCAGGACCTCACCCTGCGCCACCTCCCGG
CGCTCTCGGGCCCTATACCGCCGGCCATCGGCAAGCTCTCCAACCTCTCGAGCCTTCGCATCTCCTGGACAGCCGTGTCG
GGCCCCGTGCCGTCCTTCCTGGGCGCGCTCAAGAAGCTCACCTTCCTTGAGCTCTCCTTCAACTCGCTCACCGGCGCCAT
CCCGGCGTCGTTGGGGACCATCCCCAACCTGTCCGGCATCAACCTCAGCCGCAACCGCCTCACCGGCGCCATC-CCCTCG
ATGTTCCTCAGCAAGTCTGCGGAC---GAGG---TCTACCTCTGGCTGTCGCACAACAACCTCACGGGACCAGTCCCGGC
CGGGTTCGCCGCCGTGAACTTTGCGCACCTCGACCTGTCGCGCAACGACCTGACCGGCGACGCGTCAGGCCTCTTTGGCC
GCGGGAAGGAGTTGCAGTACATCGACCTGTCCCGCAACGCCTTCGATTTCGACCTCTCGGGCGTGGTG---CTCCCGGAG
CAGCTCTACTTCGTCGACGTGAGCCACAATGCCATCCATGGCAGCATCCCGGCGCAGGTCGCCAACTTGTCCAATCTGCA
GTTCTTCAACGTCAGCTACAACAGGCTCTGCGGCCCTATACCCACCGGCGGGAACACGGCGAGGTTCGATCTCTACAACT
TTCAGCATAACAAGTGCCTCTGCGGTGCTCCACTCCCTGCATGCAAGAAATAGAT-------------------------
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>chr3D_387
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-----------------CATCAAAGC--CACACACACACACAGCCGACAGGATGAGGATGCGCTCACGCGCTCTGCTCGT
CCTCCTCCTCTGTTCTC---------TCCTCGCCGGCGCGGCCAACGCCGAGCCCTCTCCGGACCCGACGTACAAGGACT
GCCACCCAGGCGACAAGGCGGCGCTGCTCGCCTTCAAGGCCGCCCTCGGGGAGGCCTACCACTTCGCGTCGTGGACGCCC
GACAACCCCTGCTGCGACTGGTACGACGTCACCTGCGACCACTTCACCGGCCGCGTCGTCGGCCTCGCCGTCTTCCAGGA
CGCCAACCTCACGGGCACCATCCCTAGCGCCCTCGCAGGCCTCCCCCACCTGCAGGACCTCACCCTGCGACACCTCCCGA
GGCTCTCTGGCCCCATACCGCCGGCCATCGGCAAGCTCTCCAACCTCTCCAGCCTCCGCATCTCCTGGACGGCCGTGTCT
GGCCCCGTGCCGTCCTTCCTGGGCGCGCTCAAGAAGCTCACCTTCCTCGAGCTCTCCTTCAACTCGCTCAGCGGCGCCAT
CCCGGCGTCGCTGGGGACAATCCCCAACCTGTCCGGCATCAACCTCAGCCGCAACCGCCTCACCGGCGCCATC-CCCCCG
ATGTTCCTCAGCAAGTCTGCGGAC---CAGG---TCTACCTCTGGCTGTCGCACAACAACCTCACGGGACCAGTCCCGGC
CGGGTTCGCCGCCGTGGAGTTTGCGCACCTCGACCTGTCGCGCAACGCCCTGACCGGCGACGCGTCCGGACTCTTCGGCC
GCGGGAAGGAGTTGCAGTACATCGACCTGTCCCGCAACGACTTCGATTTCGACCTATCGGCCGTGGTG---CTCCCAGAG
CAGCTCTACTTCGTCGACGTGAGCCACAATGCCATCCATGGCAGCATCCCGGCGCAGGTCGCGAGCTTGTCCAACCTGCA
GTTCTTCAACGTCAGCTACAATAGGCTCTGCGGCCCAGTGCCGACCGGCGGCAACATGGAGAGGTTTGATCTCTACAACT
TTCAGCACAACAAGTGCCTCTGTGGTGCTCCCCTCCCTGCATGCAAGAAATAGATAGAACTGTCCGCTGGACATGAAACA
TAAT----------------------------------------------------------------------------
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-------------------------------------------------------------CCGGTGGGTTTGGCAGAAT
GAT------------GATATT-TCTATGTCGATCATTTGGGCTAATGTC---TCCCTGGATTAAGAGTTGTGCTGAAATA
AAGTCAAGATGGTTGTG--TGTGTCGGTGAAGTTATCAGCTAGATTTAGCACTTCCTCTGTTTTAACTGTCTGACATCAT
GATTCATCTGTGATCTGTTGTAGCGGAAAGATCCTCGATGGTTGGACCAAGGTCAAATTATTTTTCTTTG-TTTTTTCAC
AATTGCTATATGTAAGTTGACTGACTTTTCA-------------------------------------------------
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>chr3B_402
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--------------------------------CACAGACACATCCGACAGGATGAGGATGCACTCG--CGCT---CTGCT
CGTCCTCCTCTGCTCTT---------TCATCGCCGGCGCGGCCAACGCCGAGCCCGATCCGGAACCGACCAACTAGGACT
GCCACCCAGGCAACAAGGCGGCGCTGCTCGCCGTCAAGGCCGCCTTCGGGGAGGCCTACGACTTAGCGTCCTGGACGCCC
AACAACCCCTGCCGCGACTGGTACGACGTCACCTGCGACTGCTTCACGCGCCGCGTCATCGGCCTCGCCATCTTCCAGGA
CGCCAACCTCACGGGCACAATCCCAAGCGCCCTCGCCAGCCTCTCCCACCTGCAGGACCTCACCCTGCGCCACCTCCCAT
TGCTGTCGGGCCCCATACCGCCGGCCATCGGCAAGCTCTCCAACCTCTCGAGCCTCCGCATCTCCTGGACGGCCGTGTCG
GGCCCAATGCCGTCCTTCCTGGGCGCGCTCAAGAAGCTCAACTTGCTCGATCTCTCCTTCAACTCGCTAAGCGGCGCCAT
CCCGGCGTCGCTGGGGACCATCCCCAATCTGCTCGGCATCAACCTCAGCCGCAACCGCCTCACCGGCGCCATC-CCCCCG
ATGTTCCTAAGCAAGTCTCCGCAC---CAGGACGTTTACCTCTGGCTGTCGCACAACAACCTCACAGGGCCCATCCCGGC
AGACTTCGCCGCTGTGAATTTCACGCACCTCGAGCTGTCGCGCAACAACCTGACCGGCGACGCGTCGGGCCTCTTCGGCC
GCGGGAAGGAGTTGCAGTACATTGACCTGTCCCGCAACGCCTTCGATTTCGACTTCTCAGGCGTGGTG---CTCCCGGAG
CAGGTCTACTTCGTCGACGTGAGCCACAATGCCATCCATGGTAGCATCCCGGCGCAGGTCGGGAGCGCCGCCAACCTGCA
CTTCTTCAACGTCAGCTACAACAGGCTCTGCGGCCCTGTACCCACCGGTGGG-ACACGGCGAGGTTCGATCTCTACAACT
TTCAGCACAACAAATGCCTCTGCGGTGCTCCCCTCCCA-CATGCAAGAAATATATGGAA---------------------
TTAT----------------------------------------------------------------------------
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-------------------------------------------------------------CTGGTGGGTTTGGCA----
----------------------TCTATGTCGACCAATTCGACTAATGTC---TCCCTGGATTAAGGGTTATGCTGAAATA
AAGTCAAGATAGTTATG--TGTGGCGATAAAGTTGTCAGCTAGATTTAGCACTTCCTCTGTTTTA---------------
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>chr3A_404
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----------------------------------CACACACAGCCGACAAGATGAGGATGCACTCACACGCC---CTGCT
CGTCCTCCTCTTCTGCTCTCTCCTAGTCCTCGTCGGCCCGGCCAACGCCGAGCCCTCTCCGGACCCGACCTACAAGGACT
GCCACCCGGGCGACAAGGCAGCGCTGCTCGCCGTCAAGGCCGCCCTCGGGGAGCCCTACCTCTTGTCGGGGTGGATACCT
GATCGCCCCTGCTGTGACTGGAACGGCGTCTCCTGCGACCACTTCACCGGCCGAGTAGTCAGCCTCGCCGTCTTCCAGGA
CGCCAACATCACGGGCACCATCCCCAGCGCCCTCGCTGGCCTCCCCCACTTGCAGGACCTCACCCTGCGCCACCTCCCAT
TGCTGTCGGGCCCTATACCGCCGGCGATCGGCAAGCTCTCCAACCTCTCGAGCCTCCGCATCTCCTGGACGGCCGTGTCG
GGGCCCGTTCCATCCTTCCTGGGCGCGCTCAAGAAGCTCACCTTCCTCGAGCCCTCCTTCAACTCGCTCACCGGGGCCAT
CCCGGCGTCGCTGGGGGCCATCCCCAACCAGTCCGGCATCAACCTCAGCCGCAACCGCCTCACGGGCGCCATC----CCG
ATGTTCCTCAGCAAGTCTGCGGAC---CAGG---TCTACCTCTGGCTGTCGCACAACAACCTCACGGGCCCCCTCCCGGC
CGGCTTCGCCGCCGTGAACTTCACGCACTTCGACCTGTCGCGCAACGCCCTGACCGGCGACGCGTCGGGCCTCTTCGGCC
GCGGGAAGGAGTTGCAGTACATGGACCTGTCCCGCAACGACTTCAATTTCGACCTATCAGCCGTGGTG---CTCCCGGAG
CAGATCTACACCGTCGACCTGAGCCACACTGCCATCCATGGCATCATCCCGGCGCAGGTCGCGAGCGCCGCCAACCTGAA
TTTCTTCAACATCAGCTACAATAGGCTCTGCGGCCGCGTGCCGACCGGCGGGAACATGGCGAGGTTCGATCTCTACAGCT
TCCAGCACAACAAGTGCCTCTGCGGTGCTCCCCTACCTCCATGCAAGAAATAGATGTAA---------------------
TTATA---------------------------------------------------------------------------
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----------------------------------------------------------TATCTTATGGGTTTGACAGAAT
AATTAACGAGATGTTGATATT-CATATGTCAACCAATTCGACTGTATTGATGTCTCTGGATCAAGAATTGTGCTGAAATA
AAGTCAAGATGACTATATATAGGGAGGTAAAGTTGCCGGCTAGCTTTGGTACTTC-TCTGTTTTTA--------------
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------------------------------------
>SNPs
----------------S----------------------------------S---------SSSSSSSSSSSSSSSSSS-
----S---S---------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--SSSS-SS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------------------------S----------------S----
-----------------------S--------------------------------------------------------
---------------------------------S----------S-----------------------------------
-------------------------------------------------------------------------------S
--------------------------S--------------------------------------S--------------
--------------------------------S-----------------------------------S----S------
-----------------------------------------------------------------S--------------
--------S-----------------------------------------------------------------------
--------------------------------------S-----S-----------------------------------
--------------------------------------S-----------------------------------------
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----------------------------------------------------S-------S------------S------
---------------------------------------------------------S----------------------
--------------------------------------------------S-------------------S------S--
----------------------------------S---------------------------------------------
----------------------------------SSSSSSS-----------------------------S---------
------------------S------------------S----S-------------------------------------
-----S--------------------S----S------------------------------------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
S-------------S----------------S----------S--------------------------------S----
--S----------------------------S---------S-----------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_159
--------------------------------------------------------------------------------
-----------------------------------------------------------CGTCCATTTGGTGCCGATTT-
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>reverse_1245
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--------------------------------------------TATTTCGACCTCTCAGGCGTG---------------
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>forward_1106
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----------------------------------------------TGTCGCACAACAACCTCACT--------------
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>reverse_5241
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----------------------------------------TGTTCGACGACCTCATCAGG--------------------
------------------------------------
