>input_sequence_80045
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------------------------------------------------------ATGTGCAAGGTTATCAACACGGTCCA
GTCGCTCGCCTGGCTGCGCCGTGCCGTGCGACGGTGGTGCTCCCGCGCGTCGGCCTCAGTGCGGCCCAACAAGAACATGC
------TG------GAAGCCGCGGTGCCGGCGGGGCACGTGGCGGTGCGCGTGGAGGGCCGCGGCGACGGGGAGTCGTCG
TCGAGGCGGTTCGTTGTGCCGGTGGCGCAGCTCAGCCACCCGGCGTTCCGGGAGCTCCTCCAGCAGGCGGAGGAGGAGTA
CGGTTTCCCGTCGGCCTCCGGCCCCCTAGCGCTCCCCTGCGACGAGGACCACCTCCGCGACGTCCTCCGCCGCGTCTCGT
CCTCCGACTCCGAGGAGCGTGGCTGCTTC---CGCCGCCGCGGTGCCATGGCCGCGCCGCACGATGACTCGCGGCCGCTG
CTGCAGGGGGTGGCCGCGGAGAAGCTCGTCTCGTGA--------------------------------------------
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>chr2D_1_TraesCS2D01G493900
CATTGGAGCCCTTTATTTTGAATAGTGCCAAAATTAAATTTTGAAGTTTCAAAAAATTCCAAAAATAACTCCACACGTTC
ATATGGATGTATGTTACACATGTGCAAATTTTAATGATGAAATAAGTAACCATGTGAGCTACACAAATGACAAAATCGTG
ATTTCAGAAAGATGAACAGTGCAGGTATTATTCACTATTTAGATATCATCATTTTGTCATTTTTGCATAGCTCACATGTT
TACTTGTTTCACCACCAAAGTTTATACATGTGTAATATTCATCCATATGATCATGTAGAATTCTTTTCGGGATTTTTTTA
AAATTTTAGATGTGATTCTTAAACTATTTAAAATAAAGTCCTCCAATACACCCGTGTTCCAGAAATCCACTCTCCATATA
TTCATTCTTACAAACCAAAGTGTTCCAAAGAAAGAATTCTTTAAAAATCCTGTATAAAATTCCTACAAACCAAAAGAGGC
GAGATAGTGAGGTTGTTCTTCTCGAGTGAGGTTGGGAAGAAGGAAGAAAGAAGAAAGAAAAAAACGACTGATGCAACATA
AAATTTCAAATACCTGAAAAAAATAGCAAAACAGAGAATGTTTTCTTGTCAGAAAGATTAGTTGAA---ATATTTTGTGA
ACT-GTCCATGTCGAATCGCCTCCAACAGAAAG----------TTACTTGTATCATGTGAATTTGTGGAACAAAGGGCTG
TAGGCATCGATCACACTTCACTCGTCTCAGTTTCACCAGAAATGAAAAATGATACTACAAACCGCTTTACTGC----ACT
GCTAGTGCTATGCTACTGCTAGGTCTCACATGCAAGACACACGACACACGTCCATGTCATCACGGATCCACGGTGCGGCG
CCGGTTCCGTGCCACTCCTGCAATTTTTTACCAACTCC-AGTGGCCGATCCCGAGCCCCGGGGCTATATATTTTGCACCC
CGTCTCCATCCGC-------------------------------------------------------------------
---AAGCAAAGCCAGATCGTCC-----CTTCAGTCCGATAAGTCAAGCTGAAGCATGTGCAAGGTTATCAACACGGTCCA
GTCGCTCGCCTGGCTGCGCCGTGCCGTGCGACGGTGGTGCTCCCGCGCGTCGGCCTCAGTGCGGCCCAACAAGAACATGC
------TG------GAAGCCGCGGTGCCGGCGGGGCACGTGGCGGTGCGCGTGGAGGGCCGCGGCGACGGGGAGTCGTCG
TCGAGGCGGTTCGTTGTGCCGGTGGCGCAGCTCAGCCACCCGGCGTTCCGGGAGCTCCTCCAGCAGGCGGAGGAGGAGTA
CGGTTTCCCGTCGGCCTCCGGCCCCCTAGCGCTCCCCTGCGACGAGGACCACCTCCGCGACGTCCTCCGCCGCGTCTCGT
CCTCCGACTCCGAGGAGCGTGGCTGCTTC---CGCCGCCGCGGTGCCATGGCCGCGCCGCACGATGACTCGCGGCCGCTG
CTGCAGGGGGTGGCCGCGGAGAAGCTCGTCTCGTGACTCGTGA----TCGATCATTCGTTCGTACAC-----CTCTGTAC
ATTGCACAAGCGGGATAGCCGTGTCCATTTGGAGAGCGAAGTAGTATTGCACCGGCACCATGGTGCCCTTTATTTTGAAA
ATAAAAATAAAAACATATTTAGAAGTTTTAAAGTAATTTGAAGAAAATTCTGTGAAACTTGCATGTGTTCACTATGGATC
CATAAGATTTTGATTTGAAAAAAAATATATAAGCTGTACAAAAAGAAAACAAAATTTCATCCCCAAAAAATAGGCCCATT
AAAAACTACATATTTGTTCCCCGCAAAAAAAACTTACACATTTGTCTTTTCTTTTTACGTCACGTGTGAAAGTAAAATGT
TGTGAAATTTTGCACATACGTAATATACATGTGCATGTGTGTTTACAAAAAAAATTCAATTTTTTTGCGTTGTAGAAAAT
AGTTTTTTTTTAAACGGGCACCATGGTGCCCATGCACAACTTGCAATTTCCGTGTCCATTTGGTCCCTAAGGCTTGATTG
GATGGCTTGATTGCATTTTGTTGGAGGGGGGCTCCCCCCTTGGACGACTTGATTGCATTCTATTGCAACTCGATGGAAGA
ACTATTATGGCCTAAACGATTAACTGGTAATGAGGTTCAGATACATGCCGGGAACATAGTAAATGTTACTATACTGATTA
TCAATGTATCACCTTTGTGATTATTTTCATAATTTATTTTAGAGTTTTCTGTACTCTAGCCTATTGCATAATGCTAGTTG
CAAAAGGGAGTTGTTCATAGAAGAACATTTGTTCTTCATTGTAATGAATAACTAAAAGGGCATAGTCTTATTATGAATAG
GATGTATGTTCTGAATATTGACAACAAAATTAAAATATCCATAACACTGACGCTAAATGTCTCAAGACTAAACGTACCAC
ATATGTGTGGCACCGCATTAGTCACATTGAGAAACCAACATGGAGAAATTATATAGTGATGGATTTTGAATTCATCTGAT
TATAA
>chr2B_589
AAACGAGAAATGA-------------------------------------------------------------------
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----------------------------------------TTTTCTTGTGGGGAAGATTAGTTCAA---ATACTTTGTGA
AG-AGTCTACTTCGAATCGCCTCCAACAGAAAG----------TAACGTCTATCATGTGAGTTTGTGAAA----------
TAGACATCGGCCACACTTCACTCGTCTCACTTTCACCCG-------AAATGATACTACAACCCGCTTTACTGCATAGACT
GCTAGTGCTATGCTACTGCTAGGTCTCACGTGCGAGACACACGACACACGTCCAAGTCATCACGGATCCACGGT------
---------------TCCTGCAATTTCC-GCCAACTCCAAGTGACCGAGCCCGAGCCCCGGGGCTATATATTG-CCACCC
CGTCCCGCTCTCCAGATACTCCATCCCACCCCACGACCCGCCATATGCAAGCTCAAAGAGTCGAGACAGAGAACAGCGGA
GCAGAGCTAGCCCAGAG---------------------------TCG-ACAACCATGTGCAAGGTCATCAGCACGGTCCA
GTCTCTCGCCTGGCTGCGCCGCGCCGTGCGACGGTGGTGCTGCCGAGCGGCGGCCTCAGTGCGGCCCGTAAAGGACATGC
------TG------GACGCCGCCGTGCCGGCGGGGCACGTGGCCGTGCGCGTTCAGAGCCGTGGCCAAGGGGAGTCGTCG
TCGATGCGGTTCCTGGTGCCGGTGGCACAGCTGAGCCACCCCGCGTTCCGGGAGCTCCTCCGGCAGGCGGAGGAGGAGTA
CGGCTTCCCGTCGACCTCCGGGCCCCTCGCGCTCCCCTGCGACGAGGCCCACCTCCGCGACGTCCTCCGCCGCGTCTCGT
CGTCTGACTCCGACGACCGCCCCTCCTTCCCTTGCCGCCGCGGCGTCATGGCGGCGCCGCACAATGACTCGCGGCCGCTG
CTGCAGGGGGTGGCCGTCGAGAAGCTCGTCTCGTGATCGATCGG-------TCGTTCGTTCGTGCGCCCAGACTCTGTAC
ATTGCAGAGGCGGGACAGCCGTGTCCATTTGG------------------------------------------------
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>chr2D_597
AATGTTCTTGTATGTGA---------------------------------------------------------------
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----------------------------------------------------AAAGATTAATTCACCAGATATTTTGTGA
ACAAGTCTACGTCGAATCGCCTCCAACAGAAAACAGAAAGTAATAACCTCTATCATGTGAATTTGTTAAACAGAGAGCTG
TAGACATCGATCACACTCCACTCGCCTCACTTTCACCGG-------AAGTGATACCACAAACCGCTTTGCTGC----ACT
GCTAGCGCTATGCTACTGCTAGGTCTCACGTGCCAGACGCACGACACACGTTCAAGTCAGCACGGGTTCACGGTGCGGTG
CCGGTGCC-----ATTCCTGCAATTTCC-GCAAACTCC-AGTGGCCGATCCCGAGCCCCGCCGCTATATAGTCTGCATCC
CATCCT------------------------CTCA-------------------------------------AGCAGCAGA
ACAAAGCAAACCCAGATCGTCG-----CTTCAGTCCGGTCTGTCAAGCTCGAGCATGTGCAAGGTCATCAACACGGTCCG
GTCGCTCGCCTGGCTGCGCCGCGCCGTGCGGCGGTGGCGCTCCCGAGCGGCGGACTCGGTGCGGCCCAACAAGGATGTGC
TCGAGTTG------GACGCCGCGGTGCCGGCGGGGCACGTGGCGGTGCGCGTGGAGGGCCGCGGCGACGGGGAGCCGTCG
TCGAGACGGTTCGTTGTGCCGGTGGCTCAGCTGAGCCACCCGGCGTTCTGGGAGCTGCTCCGGCAGGCGGAGGAGGAGTA
TGGCTTCACGTCGGCCTCCGGCCCCCTCACGCTCCCCTGCGACGAGGACCACCTCCGCGACGTCCTCCGCCGCGTCTCGT
CCTCCGACTCCGAGGAGCGCGGCTGCTTC---CGCCGCCGCGGTGCCATCGCGGCGCCGCACGATGACTCGCGGCCGCTG
CTGCAGGGGGTGGCCGTGAAGAAGCTCGTCTCGTGATCGATCATCGGTCGATCGTTCGTTCGTA----------------
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>chr2A_661
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------------------------AACACAAAG----------TAACCTGTATCATGTGAACTTGTGAAACACAGAGCTG
TAGACATCGATCACACTCGACTCGTCTCACTTTCACCGG-------AAATGATACTACAAACCGCTTTACTGC----ACT
GCTAGTGCTACGCTACTGCTAGGTCTCACGTGCAAGACACACGACACACGTCCAAGTCAGCACGGGTTCACGGTGCGATG
CCGGTGCC-----ATTTCTGCGATTTCC-GCCAACTCC-AGTGGCCGACTCCGAGCCCCGCCGCTATATATTCTCCACCC
CGTCCCGCTCTCCAAATACTCCATCCAATACTCA-------------------------------------AGCTGCAGA
ACAAAGCAAACCCAGATCGTCTTCAGACTTCAGTCCGGTCAGTCAAGCTCAAGCATGTGCAAGGTCATCAACACGGTCCG
GTCGCTCGCCTGGCTGCGCCGCATCGTGCGGCGGTGGCGCTCCCGAGCGGCGGCCTCGGTGCGGCCCAACAAGGATGTGC
------TCGAGCTAGACGCCGCGGTGCCGGCGGGGCACGTGGCGGTGCGCGTGGAGGGCCGCGGCGACGGACAGTCGTCG
TCGAGGCGGTTCGTTGTGCCGGTGGCGCAGCTGAGCCACCCGGCGTTCTGGGAGCTGCTCCAGCAGGCGGAGGAGGAGTA
CGGTTTCCCGTCGGCCTCCGGCCCCCTCGCGCTCCCCTGCGACGAGGACCACCTCCGTGACGTCCTCCGCCGCGTCTCGT
CCTCCGAAACCGAGGAGCGCGGCTCCTTC---CGCCGCCGCGGTGTCGTGGCGGCGCCGCACGATGACTCGCGGCCGCTG
CTGCAGGGGGTGGCCGTGAAGAAGCTCGCCTCGTGATCG-----------------------------------------
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>chr2B_691
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----------------------------------------------------------------GTGAAACAGAGCGCTG
TAGAGATCGACCATAGTTCACTCGCATCACTTTCACCAGAAATGAAAACTGATACTACAAACCGCTTTACTGC----ACT
GCTAGTGCTATGCTACTGCTAGGTCTCACGTGCAAGACACACGACACACGTCCATGTCATCACGGGCTCACGGCGCGATG
ACGGTGCC-----ATTCCTGCAATTTCC-ACCAACTCC-AGTGGCCGATCCCAAGCCCCGGCGCTATATATATG-----C
CGTCCCGCTCTCCAAATACTCCATCCCATCCA----------ATCCGCAAGTTCACGAAGGCAAACAGCAGCAGAGCGCA
CAGCTAT------AGGTCGTCG-----CTTCAGTCCAATCCGCTTCG-TCAAGCATGTGCAAGGTCATCAACACAGTCCA
GTCGCTCGCCTGGCTGCGCCGCGCCGTGCGACGGTGGTGCTCCCGCGCGTCGGCCTCAGTGCAGCCCAACAAGAACATGC
------TG------GACGCCGCGGTGCCGGCCGGGCACGTGGCGGTGCGCGTGAGGGGCCGCGGCGACGGGGAGTCGTCG
TCGAGGCGGTTCGTTGTGCCGGTGGCGCAGCTGAGCCACCCGGCGTTCTGGGAGCTGCTCCAGCAGGCGGAGGAGGAGTA
CGGTTTCCCGTCGGCCTCCGGGCCCCTCGCCCTCCCCTGCGACGAGGACCACCTCCGCGACGTCCTCCGCCGCGTCTCGT
CCTCCGACTCTGAGGAGCGCCCCTCATTCCGTCGCCGCCGCGGCGTCGTGGCGGCGTCGCACGATGACTCGCGGCCGCTG
CTGCAGGGCGTGACCATGAAGAAGCTCGCCTCGTGATCGATCGG-------TCGACCGTACG----CCTG--CTCTCTAC
ATTGCAGAAGCGGGATCGCCGTGTTCATTT--------------------------------------------------
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>chr2A_753
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----------------------------------------------AAATGATACTAGAGCCCGCTTTACTGC----AGT
GCTAGTGCTATGCTACTGGTAGGTCTCACGTGCAAGACACACGACACACGTCCATGTCATCACGGGCTCACGGCGCGATG
ACGGTGCC-----ACTCCTGCAATTTCC-GCCAACTCC-AGTGGCCGATCCCGAGCCCCGGCGCTATATATACGCT-CCC
CGTCCCGCTCTCCAAATGCTCCATCCCATCCA----------ATCCGCAAGTTGAATCGTCGC-----------------
-------------------TCG-----CTTCAGTCCAATCCGCTTCG-TCAAGCATGTGCAAGGTCATCAACACCGTCCA
GTCGCTCGCCTGGCTGCGCCGCGCCGTGCGGCGGTGGCGCTCCCGAGCGGCGGCCTCGGTGCTGCCCAACAACGATGTGT
T---------------------GGTGCCGGCGGGGCACGTGGCGGTGCGCGTGGAGGGCCGCGGCGACGGGGAGTCCTCG
CCGAGACGGTTCGTTGTGCCGGTGGCGCAGCTGAGCCACCCGGCGTTCTGGGAGCTGCTCCAGCAGGCGGAGGAGGAGTA
CGGTTTCCCGTCGGCCTCCGGCCCCCTCGCGCTCCCCTGCGACGAGGACCACCTCCGCGATGTCCTCCGCCGCGTCTCGT
CCTCGGTCCCCAAGGATCGCGGCTGCTTC---CGCCGCCGCGGTGCCATGGCGGCGCCGCACGATGACTCGCGGCCGCTG
CTGCCGGGGGTGGCTTTGAAGAAGCTCGTCTCGTGATTAATCGTAGGTCGATCGTTCGTTCGTA----------------
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>chr2D_997
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--------------------------------------------------AAGCATGTGCAAGGTCATCAACACGGTCCA
GTCGCTAGCCTGGCTGCGCCGCGCCGTGCGGCGGTGGCGCTCCCGAGCAGCGGCCTCGGTGCGGCCCAACAAGGATGTGT
T---------------------GGTGCCGGCCGGGCACGTGGCGGTGTGCGTGAGGGGCCGCGGCGACGGGGAGTCGTCG
TCGAGGCGGTTCGTTGTGCCGGTGGCGCAGCTGAGCCACCCGGCCTTCTGGGAGCTGCTCCAGCAGGCGGAGGAGGAGTA
CGGTTTCCCGTCGGCCCCCGGCCCCCTCGCGCTCCCCTGCGACGAGGACCACCTCCGCGACGTCCTCCGCCGCGTCTCGT
CCTCCGACTCTGAGGAGCGCCCCTCCTTTCGTCGCCGCCGTGGCGTCGTGGCGGCGCCAAGCGATGACTCGCGGCCGCTG
CTGCAGGGGGTGGCCGTGAAGTAGCTCGCTTCGTGATCGATCGT-------TCGTTCGTTCGTACGCCTG--CTCTCTAC
ATTGCAGAAGCGGGATAGCCGTGTTCATTTG-------------------------------------------------
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>chr2A_997
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--------------------------------------------------AAGCATGTGCAAGGTCATCAACACGGTCCA
GTCTCTCGCCTCGCTGCGCCGCGCCGTGCGACGGTGGTGCGACCGAGCGGCGGCCTCGGTGCGGCCCGTAAAGGACATGC
------TG------GACGCCGCCGTGCCGGCGGGGCACGTGGCCGTGCGCGTTCGGGGCCGCGACGACGGGGAGTCGTCG
TCGAGGCGGCTCGTGGTGCCGGTGGCGCAGCTGAGCCACCCGGCGTTCCGGGAGCTGCTGCGCCAGGCGGAGGAGGAGTA
CGGCTTCCCGTCGGCCTCCGGGCCCCTCGCGCTCCCCTGCGACGAGGACCACCTCCGGGACGTCCTCCGCCGCGTCTCGT
CGTCTGACTCCGAGGAGCGCCGCTCATTCCCTCGACGCCGCGGCGTCATGGCGGCGCCGCACGATGACTCGCGGCCGCTG
CTGCAGGGGGTGGCCGCCGAGAAGCTCGTCTCGTGATCGATCGG-------TCGTTTGTTCGTGCGCCCAGACTCTGTAC
ATTGCAGGAGCGGGATAGCCGTGTCCATTTGG------------------------------------------------
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>SNPs
S--S-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS------------S----------------
--S----S-S----------------------------------S--S-------------------S----S--S----
---S-------------------------S--------------------------------------------------
-----------------------------S------------------------------------------------S-
-----S--SSSSS-------------SSS---------------------------------------------------
----S-SS--SS--------------------------------------------------------------------
----------S----------S-----------------S---------S---------------S--------------
---------------------S----------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------S-----------------------------------------------
---------------------------S----------------------------------------------------
-------------------S--------------------------------S---------------------------
------------------------------------S-SS-S-----------S-----------S--------------
------S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_907
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-------CGTGCCACTCCTGCAATTTT-----------------------------------------------------
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>reverse_2488
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-------TGGCACCGCATTAGTCACAT-----------------------------------------------------
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