>input_sequence_80043
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-------------------------------ATGCCTCACCACCACGGCGCGCTCCCCGACGAGGAGGCCCCGTCGCCAC
GGCCCTCCGCGGCCGGCTGCTACACCTTCCTCCGCTCGGCCGCCTCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTC
GAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGTCGGCACGACGGGGAAGGCGAGGAGCGTGTTCCACGTGGA
CCCGGCGGTGCTGGAGGCCGAGCCGGTGCGCAGGTTGGTGGCCGCGGCGGGAAGGCGCACCGCGGGCGGCGCGGTGGCGG
TGACCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCGGAG
ATCGTCGAGTTCTACTCGGAGGAGGAGGACGACGAGGAGCACCACGACGACGGCCACGGGTTCAAGCTCAAGCGCTAG--
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>chr2D_1_TraesCS2D01G165400
ATTGTCTTATAGTCTCAAATGGGCCAATAGCGTGTTGCACGGTTGCCTCTTCGTCATTGGAGCCCGCCAATCATTGCTAA
TCATGGATAAGATGGCATCAAAGCCATGGTCATAACGAACCATCGCCCTAGAGAAGAAACCATCGAAGACGTTACCACCG
AAAGATCCAAGATCCCAACCTCCAAACAAGCTGACAAGCCTCACTCCGG-ACCGAAGGTCACACCTA------------G
GAGGCAAAGCGAAGCTGCCCTCGCCACCATGTTGACAAACCCTGTAAACCCTAACTCAACGACCAGAGAGACTAACATGA
ATCTACGCCAATTGAGCCATCTACACGACCGCAACCGACACTGTTGAGATGAGGAGACTCAAGAAAACATTATTGACCAG
ATCGGCACCGTCGCCACCAACCTACTAAAAACTCCAAAGCGAAGGGAGGGGGAGAACTCCATTCAGTAGG----------
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--------------------------------------TCGGGGCCTCCCTGCACTCCATTCAAGTCAATGAAGGAGG--
---GATGACCTACAAACGGATGA---GGTGTGGCGGCGCAGTGTGCCCAGAAAAATCTCAATGCGTTTTAATAATGTAAA
ATGTGTGAAATGAGATAAAAAAATATTTGCGTCGAAGTAAGGCAGTAGAGCGTATATATGAATGGATTATGACATCAAGC
AGGTTTCTAGGTGGCCGATCCTATCAGTTTATGAGCAACAAAAACAACGACCCCATGTCGATCGAGAGAGGGAAAACGAA
AGGAAAACCAAAAGTAAACGCAAAAGCCAC-CTTCCCTGATCCG-ATCCATTCCGGCACAACCCCCCACCCGGGTGGTAA
CTCGACCGTTAGTTCCAAACCCTCCGTCCAACATAAAAGGACTTCCACCACGCAACGCAACGCCCCCGATCGCTTCGCTC
TCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCACCAGCTTACCTCCGGGTTGCCCAGTTCCAGTTCCAGTTT
CAGCAGGCCAAGAGCAAGAAACCCGGCAACAATGCCTCACCACCACGGCGCGCTCCCCGACGAGGAGGCCCCGTCGCCAC
GGCCCTCCGCGGCCGGCTGCTACACCTTCCTCCGCTCGGCCGCCTCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTC
GAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGTCGGCACGACGGGGAAGGCGAGGAGCGTGTTCCACGTGGA
CCCGGCGGTGCTGGAGGCCGAGCCGGTGCGCAGGTTGGTGGCCGCGGCGGGAAGGCGCACCGCGGGCGGCGCGGTGGCGG
TGACCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCGGAG
ATCGTCGAGTTCTACTCGGAGGAGGAGGACGACGAGGAGCACCACGACGACGGCCACGGGTTCAAGCTCAAGCGCTAGTT
----AAGCCTCTTCA-AGCTATAAATTCGATTCATCT---AATGATGATTCTCATCGTATTACGCACGTACGTGTACACC
ATAGCATGTACTACTACTCCGTGCAGTAATCCGATCATCCTCTAGTACGTACACTAATTAAGCT-------------GCA
TGATCCACGCA--------------TGTGTCCGTGGATCGATTCAACTGG---ATGCAGGTTCATAGCGCGAAAGAGCGT
GGAACCTGGTTGATTACT---TTATGTACGCTTATTATTGG-GTTAATAAATAATGTGATGATGGAAGAAACATTTGTTT
GCAACAAACACATGATGGA-----CACTTGATGTCTGGCATCCA--CT---GCAGATTCTCTTGCGAGCCTGCTGCTTTT
GGCCGTCGCCTAGGTGCGTAGAACTGCAACACCCGCCGTGGCGACGGATTTCCGAGCACGACGACTCTTGGTGAAAAAGA
GTCGATGGACCGGACGTGGCAACTACCCTGAGCGG-----------------TC--------GTGGATGGCCTCAGTGTC
AATGATCAGTAGTGTGGCAGGGGCAGGCAGGAGGCCACATGGATGATGGGCAGACGGTGTCGGCCGGCCAGCCGGAGCAT
CCCAAGTGCCAAGGTGTGCCTCCA--ACCAGCACGACGCTCCGTCGCCGGTAGGCTCCCCGGCCGGCGGCGGCGGGCCAG
GTAGGTGCTGCTGCAGCGCTAGCTAGCCGACGTGCGGGGGCGAAAATTGTTGCTCCCGGGTCGATGTCGTCGAGGCGTAT
CTGTGATGGATTGGATCGGTTGCCTAGGCCCCAA-----TCAAATCAAACAGAATGCAGGCGATGTACTTAAGGCTTAAA
GCGACACGAGACGTGACGACAGCCGCCGGATATGCGACGAGGTC---GC-----TGCCTGAATATGTTAAGCCTGCCTGC
G----TGC----ATGATCTTCCACGGAAGGTGCATTACATATGCAGCAGGCCTCGTCGCCATCCCTTCGTCTCTACGGGA
TCAGCTACGGCTATATACAGCTTACTTACTTACCCAGCACCTACCTTGCGATGCAGAC
>chr2B_1
ATTGTCTTTG-GTCCCAAATGGGTCGATGGCGTGATGCGCTGTTGCCTCTTCATCATTGGAGTCGGCCAATCATTGCTAA
TCGTGGATAAGATGACATCAAAGTCATGGTCATAACGGATCAGCGCCCTAGAGAAGAAACCGTCGAAGACGTCGCCGCCG
GAACAGCCAAGATCCCAACCTCCAAAGAAGCTGACAAGCCTCACTTTAGCACCGAAGGCCGCACCTACATGATTGGATAG
GAGGCAAAGGGAAGTTGCCCTCGCCACCATGTTGACAAACCCCGCAAACCCTAACTCAACATCTTGAGAGACTAGCATGA
ATCTACGCCAATTGAGCCATCTACATGACCACAACCGACAATGTTGAGATGAGGAGACTCGAGAAAACGTTATTGACCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGATCGGGGCCTCCCTGCACTCCATTCGAGTCAATGGAGGAGGGA
AATGACGACTCACAAACAGAGGA---GGTGTGGCGGCGCAGTGTGCCATG-AAAATCTCGATGCATTTTAATAATGTGAA
ATG---------AGATAAAAAAATATTTGCATCGAAGTAAGGCAGTAGAGCGTATATATGAAGGGATTATGACACCAAGC
ACGTTTCTAGGT---CGATCCTATCAGTTTACGAGCAACAAAAACAACGACTCCATGTCGATCGAGAGAGGGAAAATGAA
AGGAAAACCAAAAGTAAACGCAAAAGCCCAGCTTTCGTGATCCGGATCCGTCCCGAAGAAACCCCCC-----GGTGGTAA
CTCGACCGTTAGTTCCAAACCCCCCGTCCAACATAAAAGGACTTCCAGCACGCAACGCAACGCCCCCGATCGCTTCGCTC
GCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCGCCAGGTTACCTTCGGCTTGGCCAGTTCCTCCC-------
--GCAGGCCAAGAGCAAGAAACCCCGCAGCAATGCCTCACCACCACGGCGCACTCCCCGACGAGGAGGCCCCGTCGCCGC
GGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCCGCCGCATCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTC
GAGTCGGCGTCCGTCGGCGTCGACGTCGTGAGGGTGGAGGTGGGCACGACGGCGAAGGCGAGGGGCGTGTTCCACGTGGA
CCCGGCGGTGCTGGAGGCCGAGCCGGTGCGAAGGTTGGTGGCCGCGGCGGGGCGGCGGACCGCGGGTGGCGCGGTGGCGG
TGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCCGAG
ATCGTCGAGTTCTACTCGGAGGAGGAGGACGAGGGCCAGCACAAA------GGCCACGGGATCAAGCTCAAGCGCTAGTT
----AAGCTTCTTCAAGC---TAAAATCGATTCGTCT---AGCGATGATTCTCATCGTATTACGGACGAACGTGTACACC
ATAGCATGTACTACTACTCCGTGTAGTAATTCGATCATCCACTAGTACGTACACTAATTAAGCTGCTAGCCAGGGATGCA
TGGTCCACACA--------------TGTGTCTGTGGATCGATTCAACTGGATCATGCAGGTTCATAGCGCGAAAGAGCGT
GGAACCTGGTTAATTTCTTTATCATGTAAGCTTATTATTAAGGTTATAAAT--ATGTGATGATGGAAGAAACATTTGCTT
ACAACAAACACATGGTGGGAGGGTCACTTGGGTGGCATGGCATGCCCT---GCAGATTCTCTTGCGAGCCTGCTACTTTT
GGCCGTCGCGTAG----GTAGAACTGCAACACCCGCCGTGGCGACGGATTTCCGAGCATGACTCTTCGTGA--AAAAAGA
GTCGATGGACCGGACGTGGCAACTACCCTGAGGCGTGACCTGAGCTAGTCCATC--------GTGGATGGTCTCAGTGTC
AATGCGAAGTAGTGT------GGCAGGCAGGAGGCCACATAGATGATGGACAGACCGTGCCGGCCGGTCAGCCGGAGCAC
CCCAGGTGCCAGGGTGTCCCGCTCCGACCAGCACGACGCTCCGGCGCCGGTAGGCTTCCCGGCCGGCG--GGCGGGCCAG
GTGGGTGCTGCTGCAGCTAGCCGACG----CGCGCGCGGGGGCAACTTGTTGGTGGGTCGATGTCGTCGTCGAGGCGTAC
CTGTGATGGATTGGATCAGCTGCCTAGGCCCCAA-----CCAAATCAAACAGAATGCAGGCGATGTA-------CTTAAA
GCGACACGAGACGTGAC---AGCCGCCGGACATGCGACGAGGTCGCTGC-----TGCCTGAATATGTTAAGCCTGCCTGC
G----TGCGTGCTTGATCTTCCACGGAACGTGCATTACATATACAGCAGGCCTCGTCGCCATCCCTTCGTCTCTACGG-A
TCAGCCACGGCTATATACAGCTTACTTACTTACCCAGCACCTACCTTGCGATGCCGAC
>chr2A_458
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--------------------------------------TCGGGGCCTCCCTGCACTCCATTCAAGTCAATGGAGGAGGGA
AATGACGACCTACAAACGGAGGAGGGGGTGTGGCGGCGCAGTGTGCGCAT-AAAATCTCAATGCATTTTAATAATGTAAA
ATGTGTGAAATGAGATAAAAAAATATTTGCGTCGAAGTAAGGCAGTAGAGCGTATATATGAAGGGATTATGACACCAAGC
AGGTTTCTAGGTGGCCGATCCTATCAGTTTATGAGCAACAAAAACAACGACTCCATGTCGATCGAGAGAGAGAAAACGAA
AGGAAAACCAAAAGTAAACGCAAAAGCCAC-CTTCCGTGATCCGGATCCATTCCGGCAGAACCCCCCGCCCGGGTGGTAA
CTCGACCGTTAGTTCCAAACCCTCCGTCCAACATAAAAGGACTTC-ACCACGCAACGCAAGGCCGCCGATCGCTTCGCTC
GCTCACTCACGGAAGCCAAACACTTTGCCTCCGGCCGGCCGCCAGGTTACCTCCGGTCTGGCCAGTTCCTCCC-------
--GTAGGCCAATAGCAAGAAACCCCGCAACAATGCCTCACCACCACGGCGCGCTCCCCGACGAGGAGGCCCCGTCGCCGC
GGCCCTCCGCCGCCGGCTGCTACACCTTCCTCCGCTCGGCCGCCTCCCGCCGCGGCCACGGCCACGGATACCGGCGCCTC
GAGTCGGCGTCCGTCG------ACGTGGTGAGGGTGGAGGTGGGCACGACGGCAAAGGCGAGGAGCGTGTTCCACGTGGA
CCCGGCAGTACTGGAGGCCGAGCCAGTGCGCCGGCTGCTGGCCGCGGCTGGGCGCCGGACCGCTGGCGGCGCGGTGGCGG
TGGCCGTGGACGCGCTGCTGTTCGAGCACCTGCTCTGGCTGGCCGCCACCGACGGCGCGGCCGCCGACGACCTGTCGGAG
ATCGTGGAGTTCTACTCGGAGGAGGAGGAGGACGAGGAGCACCACGACGACGGCCACGGGTTCAAGCTCAAGCGCTAGTT
CATTAAGCTTCTCCAAAGCTATGAACTCGATCCGTTTACCAGCGATGATCCTCATCGTATTACGCACGTACGCGTACACC
ATAGCATGTACTACTACCCCGTGTAGTAATTCGATCGTCCACTAGTACGTGCACTAATTAAGCTGCTAGCCAGGGATGCA
TGATCCACATATGTGTCTTTGACTCTGTGTCTGTGGATCGATTCAACTGGAT---GCAGGTTCATAGCGCGGAAGAGCGT
GGAACCTGGTTAATTACT---TTATGTAAGCTTATTACTGAAGTTAAATAATAATCTGATGATGGAGGAAACATTTCTTT
AGAACACACACAGGATGAA-----CACTTGGGTGGTGCTATGTTACCGGCCGCAGATTCTCTTGCGAGCCAACTACTTTT
GGCTC-----------------------------------GCGACGGATTTCTGAGCACGATCGACTCGCCGTGGC--GA
GTTGTTCGACCGGACGTGGCAGCTACCCTGAGGCGTAACCTGCGTAGCTGGTCATCGGTGCTGTGGACGGTCTCAATGTC
AATGATCAA---TGT------GGCAGGCAGGAGGCCACATGGATGATGGGCAGACCGTGTCGGCCGGCCAGCCGGAGCAC
CCCAAATGCCAAGGTGCCCCGCCCACT--AGCACGGCGCTCCGTCGCCGGTAGTCTCCCCGGCCGGCCG-----------
---------------GCTAGCCGACG----CGCGCGCGGGGGCAACTTGTTGGGGGGTCGATGTCGTCGAGGCGT-GTAT
CAGTGATGGATTGGATCAGCTGCCTAGGGCCCAATCAAATCAAATCAAACAGAATGCAGGCGATGTA-------CTTAAA
GCGAGACGAGATGTGAC---AGCCGCCGGACATGCGACGAGGTCGCTGCCTGATTGCCTGAATATGTCAAGCCTCAAGCC
TGCCCTGCGTGCATGATCTTCCACGGAACGTGCATTACATATGCAGCAGGCCTCGTCGCCATCCCTTCGCCTCTACGG-A
TCAGCCACGGCTATATACAGCTTACTTAC----CCAACACCTACCATGCGATGCCGA-
>SNPs
--------SSS---S--------S-S--S-----S---S-S-----------S---------S-S---------------
--S-----------S--------S-------------S-S--S------------------S----------SS--S---
S--S-S--------------------S------------------SSS----------S-S-------------------
---------S----S---------------------------S-S---------------SS-SS---------S-----
-------------------------S----S---------S-------------------S-------S----------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
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-----------------------------------------------------------------------S--------
-----S--------------S-----------------------------S-------------S---------------
--------------------------------------------------------------S-----------S-----
---------------------------------------------------S----------------------------
------------------------------------S---------------------S--------S------------
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S---------------------------------------S----S----------S---S--------SSSSSSSSSSS
SS----------------------S-----------------------------------------------------S-
----------S---------------------------------------------------------------------
-----------------------------------------S----------S---------------------------
---------------------------------------------------SS----S----------------------
--S-----------------------------------------------------------------------------
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--------S----------------S-------S-------SS-------------------------------------
-----------------------S------S---------S---------------------------------------
--------S----------------------S------------------------------------------------
-----------S----------------S-----------S------S--------------------------------
S-----------------------------SSSSS--SS--SSS------------------------------S-----
---------S---SSSS---------------------------------------------SSS--S--SSS-------
--------------------------------SS------------------------------------S---------
---------------SSSSSS----------------------------------S-----------------------S
-----------------S--S--S---------------------------------------------S----------
--S--------------SSSSSSSS-SSSS--S---S---S-S--S------S-SSSSS-SS-SS---------------
-----------------S-S-----------------------------------------------SSSSSSS------
-----------------SSS----------S-------------------------------------------------
----------------------------S-------------------------------------------------S-
-----S------------------------------------------------S---
>forward_410
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----------------------------------------------------------------------TATTGACCAG
ATCGGCACCG----------------------------------------------------------------------
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>reverse_2521
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----------------------------------------CGAAAATTGTTGCTCCCGGG--------------------
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