>input_sequence_80035
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----------------------------------------ATGGCGCAACGGGGCGATCCATCTGCATCAAGCTCAAAGG
GGAAGGACAGACTGGAGGCACTTATGAAAGAGCTTGCTCTGAAGGATGATGACCTTGATGATGTGGTCTTTGACGAGGGT
GATGCTCCAGCGGAGGAGGACCTGCGGTGGATGATCCTAGCTCGTGTTCATATGGACAAGAGTTTTAGCACATACTGGTT
CTTTCGCAATATGAGATCAGCTTGGGACCTGGCGAGGCCGGTCAAGATCAAAACACTTGAGAAAAACTTGTTTCAGATGC
AGTTCAATTGCTTGGGCGATTGGGAGAAGGTGACCCAAGGAGGGCCGTGGCACTTCAGGGGAAACCCGGTGGTTATTGCT
CTATATGATGAATACACAAAACCATCGTCCATTGAGCTCTTCACTTTTGAAGTCTGGGCAAGAATACTTGATCTTCCAAT
GGCATAA-------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G365000
ATTTGGGGGCCTGTGGACCGGTTGTGTGGTGCGTAGGATGGGCTGCTCCGGTCCAAACCTGGCCACATGGGCCGGCCCAA
CCCGGCATGGCTGTAAAAGGGCTTGGCACAGCCATGCTTCTAGGTTGGCCCATATGTCGGGTACGCGTGCTTCTGGGTCG
GCCCGTGTGCCTGGGCTGTGAGGCTAGGCTCATGTGATTTTATTTTAAATTTTTAAACAACCCAAAAGGCCGAAATAGCA
AGCAGGTCGGACCGACACATTCGGCTAATGTGTTGTGCTTGGGCCTCGATGCAAGGCACGCGTGTCGGCATGGCATGACC
CATTTATAAACGGGCCGCGTGAACTATGTTGGCCCAGATGGCCAGGTTTGACGCACGGGTCGTGTCGTGCTAGCCCGAAG
GCCTTGTCACGTGGATCGGTCTGGCACCACACGGCTGCTGGTCGGCCTGTGTTGCTTTTCAGCTTTGTGGGCCTCCAAGC
CTTTTGTTTTTAAAAATTAAAAAAACTAATAAATAAATGCATGAAAATCTAGAAAATTAAAAAAAATATAGGAAAATCTT
TAAAAAATAGGGGGGAAATCCTAGTTAATACTTACAAGCCAAATGGGTCGCATGCGACATCGGGCCATGTCATGCCGGCC
CGCAATTAAAAGGGTCGTGTTGTGCCCGACCTTAAGGCCCGCCTTTCGGGGTCGGCCTTGTTCGTGGTGAGCCGAAGGTC
GGCCCAACCCTTTTAATCACATGTCGTACCGAACCAAAATTACATGCACGTGGGCCGGACTTCAAGGCACATCCGCCAAC
TTTACTTTGGGCTAATGGCATCGACGACACGACGCTCCCAGACGTCACTTCTTTTCATTTGGCGACTCCGGGGTAGTCTT
GGACTGCTACCCGGCCTTGGGGCGAATCCGATTGGGGTAGGGGTTAGGGTTTTTTGATATCTCCCGGGGCTGTGAGATCA
TTGAGATCGATCCGTTGTCTGTTTCCCTTCGGCGTCGATCATGGCGCAACGGGGCGATCCATCTGCATCAAGCTCAAAGG
GGAAGGACAGACTGGAGGCACTTATGAAAGAGCTTGCTCTGAAGGATGATGACCTTGATGATGTGGTCTTTGACGAGGGT
GATGCTCCAGCGGAGGAGGACCTGCGGTGGATGATCCTAGCTCGTGTTCATATGGACAAGAGTTTTAGCACATACTGGTT
CTTTCGCAATATGAGATCAGCTTGGGACCTGGCGAGGCCGGTCAAGATCAAAACACTTGAGAAAAACTTGTTTCAGATGC
AGTTCAATTGCTTGGGCGATTGGGAGAAGGTGACCCAAGGAGGGCCGTGGCACTTCAGGGGAAACCCGGTGGTTATTGCT
CTATATGATGAATACACAAAACCATCGTCCATTGAGCTCTTCACTTTTGAAGTCTGGGCAAGAATACTTGATCTTCCAAT
GGCATAACATGGAAAGATAAAGGCTCTAGCATCGAAGATTGGTGAGTATGTTGATGCTGAACCATCCTCATTCGATTTCG
AAGGCAACTTCTACCGGGTTCGAGTACGT-CTTGATGTTCGTAATCCTCTGAAAAAAGCCACATCTTTGATTCGTGGCGG
AGAGAGGGAGATCTTCGCTGTGAAATATGAGCGTTTGCTGGACTGGTGCCAAGTTTGTGGCATGATGGGCCATGAATTTA
AAGAACACGGGGATGGGGTGAATCCTCCTTCTGCTCTTGTCTTCAGGAATTTGCGCGCCCCAGCGATTACAACTTGGGGG
ACACGCAGGCGTAATGACATGCAAAAGGCAAATAATCAGCCCAGAAACACTGAAGAGAACCCACAATACGTAGGTGCTGA
TGGCCAAGGTGCATAGGACATTGACATGGAGGTGGCCGACCCTAACCGAAAGCGCGGCTCTGAGCAGGTTGTTAACCAGT
CAGGGACGGGGATGGAGCTGGTGATTGTTGAGAAGGCCAAAGGGGGCGTTATTCGTCCTAGCCCGCCACCTAAGCAAGAT
CCTAAGAGGTCCAAAATGTCGCTGATGACGGAGAAGGGACTTTCAGAGAAGAATATCAACAACAATGTGAAGAAGGTACC
GATCGGTGGAGGTGGAAAAGGTAATGATGGGCGTTTGGCGGCCTCCCCGGCGAAGGACCGCCGGTCCCAATGAATATTTT
CTGCTAGAATTGTCGAGGGATTGGCAACTGATAACCCACAAGTATAGGGGATCGCAATAGCTTTCGAGGGTAGAGTATTC
AACCCAAATTTATTGATTTGACACAAGGGGAGCCAAAGAATATTCTCAAGTATTAGCAGCTGAGTTGTCAATTCAACCAC
ACCTGGAAACTTAGTATCTGCAGCAAAGTGTTTAGCAGCAAAGTAATATGATAGTGGTGGTAACGGTAACAAAAGAGTAA
TGAAAGCAAAGTAATATTTTTGGTATTATGTAGTGATTGTAACAATAG
>chr5A_861
GGCTGA--------------------------------------------------------------------------
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-----------------------------------------------------------------CTCCGGGGCAGTTTT
TGACTGCTTCCCGGCCTTGGGACGGATCCGTTTGGGGTAGGGGTTAGGTTTTTCTGTTATCTCTCGGGGCTGGGAGGTCT
GCGAGATCGATCTACAGTCTGTTCTTCTTCGGCGTCGATCATGGCGTGTCAGGGTGATCCATCTGCATCTGGCTCAAAGG
GGAAGGATAAGCTGGAGGCACTCATGAAAGAGTTAGCTCTGAAGGACGATGACCTTGATGATGTGGTTTTCGATGAGGAT
GATGCCCCAGCGGAAGAGGACCTGCGTTGGATGATCCTATCTCGTGTTCATATGGACAAAAGTTTCAGCACATATTGGTT
CTTTCGCAATATGAGATCAGCTTGGGACCTGGCAAGGCCGGTTAAGATCAAAACACTTGAGGAAAACTTGTTTCAGATGC
AGTTCAACTGCTTGGGCGATTGGGAGAAGGTTACCCAAGGAGGGTCGTGGCACTTTAGGGGAAACCCGGTGATTATTGCT
CCGTATGATGGATACACCAAGCCATCGTCCATTGAGTTGTTCACTTTTGAAATCTGGGCAAGAATACTTGACTTTCCAAT
GGCATACCACGGCAAGATAAAAGCTCTAGCATCAAAGATCGGCGAGTATGTTGATGCTGAACCATCCTCGTTCGACTTTG
AAGGCAATTTCTACCGGGTACGAGTACGT-CTTGATGTTCGGAATCCGCTGAAAAAAGCCACATCTTTGATTCGTGGCGG
AGAGAGGGAGATATTCGCCGTGAAATATGAGCGTTTGCCGGACTGGTGTCAAGTATGCGGCATGATGGGCCATGAATTTA
AAGAACATGGGGATGGGGTGCATCCTCCTTCTGCTCTTGTTTTCAAGAATTTGCGAGCCCCGGCTACTACAGCATGGGGG
ACACGTAGGCGTAATAACGTGCAAAAGGCGAAAAATCAGTCCAGAAACTTTGAAGGGAACTCACAGTCCGTAGATGCTGA
TGGCCAAGGTACAGAGGATATCGACATGGAGGTGGTTGACCAGAACCGTAAGCGCTCATCTGATCAGGT-----------
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>chr7A_861
GGCTGA--------------------------------------------------------------------------
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-----------------------------------------------------------------CTCCGGGGCAGTTTT
TGACTGCTTCCCGGCCTTGGGACGGATCCGTTTGGGGTAGGGGTTAGGTTTTTCTGTTATCTCTCGGGGCTGGGAGGTCT
GCGAGATCGATCTACGGTCTGTTCTTCTTCGGCGTCGATCATGGCGCGTCAGGGTGATCCATCTGCATCAGGCTCAAAGG
GGAAGGATAAGCTGGAGGCACTCATGAAAGAGTTAGCTCTGAAGGACGATGACCTTGATGATGTGGTTTTCGATGAGGAT
GATGCCCCAGCGGAAGAGGACCTGCGTTGGATGATCCTATCTCGTGTTCATATGGACAAAAGTTTCAGCACATATTGGTT
CTTTCGCAATATGAGATCAGCTTGGGACCTGGCGAGGCCGGTTAAGATCAAAACACTTGAGGAAAACTTGTTTCAGATGC
AGTTCAACTGCTTGGGCGATTGGGAGAAGGTTACCCAAGGAGGGCCATGGCACTTTAGGGGAAACCCGGTGATTATTGCT
CCGTATGATGGATACACCAAGCCATCGTCCATTGAGTTGTTCACTTTTGAAATCTGGGCAAAAATACTTGACTTTCCAAT
GGCGTACCACGGCAAGATAAAAGCTCTAGCATCGAAGATCGGCGAGTATGTTGATGCTGAACCATCATCGTTCGACTTTG
AAGGCAATTTCTACCGGGTACGAGTACGT-CTTGATGTTCGGAATCCGCTGAAAAAAGCCACATCTTTGATTCGTGGCGG
AGAGAGGGAGATATTCACCGTGAAATATGAGCGTTTGCCGGACTGGTGTCAAGTATGCGGCATGATGGGCCATGAATTTA
AAGAACATGGGAATGGGGTGCATCCTCCTTCTGCTCTTGTTTTCAAGAATTTGCGAGCCCCGGCTACTACAGCATGGGGG
ACACGTAGACGTAATAACGTGCAGAAGGCGAAAAATCAGTCCAGAAACTTTGAAGGGAACTCACATTCCGTAGATGCTGA
TGGCCAAGGTACAAAGGATATCGACATGGAGGTGGTTGACCAGAACCGTAAGCGCTCATCTGATCAGGT-----------
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>chr5D_869
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--------------------------------------------------------------------CGGGGCAGTCAC
AGACTGCTACCTGGCCTTGGTACGGATATGGACTGGGAAGATGTTAGGGTTCTTTGATATCCCTCGGG-CGGGCGGGTCC
AGGAGATTGATCTGTTTCCTGTCTCATCCTCGCGGC---CATGGCGTGTCGGGGCGACTCATCTGCGATGGGCTCCAAGG
GGAATGATAAACTGAAAGTCCTCGTGAAGGAGCTAGCTCTGAAGGATGATGACCTCGATGATGTGGTCTTCGAGGAAAGT
GATGCACCAGCGGAAGAGGATCTACATTGGATGGCCTTGGTTCGTGTTCATATGGACAAAAGCTTCAGCACATATTGGTT
CTTTCGCAATATGCGAACAGCCTGGGATCTGGTGAGGTCGGTCAAGATCAAAACCCTTGAGGAAAACTTGTTCCAGATGC
AGTTTAACTTCTTGGATGATTGGGAGAAGGTTACCCAAGGTGTTCCGTGGCACTTTAGGGGGAACCCGGTGATCATCGGT
CTGTATGATGGATACACCAAACCATCGTCCATTGAGCTCTACACTTTTGAAATCTGGGCAAGAATAATCGATCTCCCAAT
TGCGTATCATGGAAAGATCAAGGCACTAGCATCGAAGATCAGCGAGTATGTTTATTCGGAACCATCTTCCTTCGACTTCG
AAGGCAACTTATGCAGGGTTA-GGTATGA-CTCGATGTGCGTAACCCTCTAAAAAAAGCAACGTCTCTGGTCCGTGGCGG
AGAGAGGGAGATCTTCGGGGTGAAGTATGAGCGTTTGCCGGACTGGTGCCAAGTTTGTGGCATGATGGGCCATGAATTTA
AGGAGCATGGTGATGGGGTGCATCCCCCCTCTACTTTAGTTTTCAAAAACTTATGTCCCCCAGCGACCACTGCATGGGGA
ACACGTCCCCGCAACAACATGCAAAAGGGG-AAAAACAGTCCAAGAATTCTGAAGAGAACTCACATGATGTGGGCACCAA
TGGCCATGAGCAAGAGGACGTCGACATGGTGGTGCCCGATCCAAACCGCAAGC---------------------------
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>chr7A_1013
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----------------------------------------------------GGCGATCCAGCGGCTTCTAGATCAAAAG
GAAAGGGCAAGTTGGAGGAGATGATGAAAGAGCTGGCCCTGAAGGTAGATGACCTCGATGACGTTGTTTTTGAGGAAGAT
GACGCCCCGGCAGAGGTGGATCTCCGCTGGATGATCTTGGTTAGAGTCCTTATGGACAAAGGGTTTAGCGCTTATTGGTT
CTTTCGCAACATGAGAACAGCCTGGGACCTCGCTAGACTGGTGAAAATCAAAACCCTAGAGGAAAATCTCTTCCAGATGC
AATTTAACTGCCTGGGTGATTGGGAGAGAGTTACACAAGGGGGACCTTGGCACTTTCGAGGAAACCCGATTATCATTGCC
CCATATGATGGATTCACGAAGCCAACTGAGATAGAGCTCTATAAGTTTGAGATCTGGGTTCGAATCATTGATCTACCGAT
TGGTTATCATGGGAAAATCAAGGATCTTGCGGCTAAGATTGGCGAGTTCGTGGATTCTAAGCCATCTTCTTTTGACTTTG
AAGGGAACTTCTAGAGAGTTA-GGGTTCACCTTGATGTGAGAAACCCTCTCAAGAAAGCGATCTCGCTGATCCGCGGAGG
AGAGAGGGTGATCTTTGCGGTAAAGTACGAGCGTTTACCAGACTGGTGCCAAGTTTGTGGCATGATGGGTCACGAGTTCA
AGGAGCACGGGGATGG----------------------------------------------------------------
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>chr2B_1037
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----------------------------------------------------------------------------AAGG
GCAAGGGCAAGCTGGAAGATCTAATGAAGGAATTGGCTCTCAATGAAGATGACCTGGACGATGTGATCTTCGAGGAAGAG
GATGCCCCGGTGGAGGAGGACCTCTGGTGGATGATCTTAGTTCGAGTTCACATGGACAAGGGTTTTAGTACATATTGGTT
CTTTCGCAACATGAAGACAGCCTAGGACCTTGCTAGGACAGTCAAGATCAAAACCTTGGAGGAAAATCTTTTCCAAATGT
AGTTTGATTGCTTGGGGGATTCAGAGCAGGTCACCAAGGGAGGACCATGGCACTTCAAGGGAAATCCTGTGATTATTGCC
CCGTATGATGGTTATACAAAACCATCCTCAATTGAGCTCTTCAAATTCGAGATCTTGGCAAATATTATTGACCTCCTGAT
TGCTTTCCATGGCAAAGTGAAGGCGCTGGCCTCCAAGTTCGGTGAATTTGTCGAGTTAAAGCTGTCGACCTTTGACTTCG
AAGGGAATTTCTACAGGGTCGGGGTCAGG-CTGGATGTGCGAAACCCTCTGAAAAAAGCTAACCCGCTGATTCGAGGGGG
CGAGAGACAGATGTTTGCCGTCAAGTATGAACATCTACCGGACTGGTGTCAAGTTTGTGGCATGATGGGCCATGAATATA
AAGAACATGG----------------------------------------------------------------------
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>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------
S--------------------S--S-----S--------------------------------S--------S---S--S
SS----------S------------S---------------------SS-------------------------------
---------S------------S-----------S--------------------------------------S------
-----S--------------------------------------------------------------------S-----
-------------------------------------------------------------S------------------
-------------------------------S---------------------------------------S--------
----------S----------------------------------------S----------------------------
------S--------------------------------------------------------------S-----S----
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------------------S-------------------S-----------------------------------------
--------------------S-------------------S----S---------S----------S----S-S------
-----S---------S-------------S--S------S--------S-----------S----S--------------
----------S--S-------S--------------------S-----S------SSS-----S-----SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_132
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--------------------------------CATGCTTCTAGGTTGGCCCA----------------------------
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>reverse_1962
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-----------------------------------------GGGGGCGTTATTCGTCCTAG-------------------
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