>input_sequence_80005
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---------ATGGAGAACGGACAGCCGCAGCCTCCTCCAGGTGACGATCTCGATCCACACATCTCAAAATATCATCTCCA
TGTCGAAGAACAGA--CCACTGGCTAATTCATCAGTGAGCTGTAAATGATCTATCTATCTATCTCAGCTCTAATTTTCTT
GCGCTTGATCAATTGCTGCATAGGCTACCCGACGGTGGACCCGAAACAGCAGGCAGGCGGCAGGAGGAGATGCTGCTGCG
GGCCGTGGCGCCGCAGGACCAAGCA---GCGTGGGCGTGGGGAGACCAGCTTCATCGAAGGATGGTGCGCGCATGGGCAT
GGCTAAAAACGCCCACCATATTTTCCTTCTATCATTTCAATCTCATTTTGGTTTGCTCACCCTGCCGTTTTTCTCCTTGA
TTCGTTTTCTCCAGCCTTGCCGCGCTCTGTTGCTGCTGGCTTTGCGAGCTGTGCTGCGATTGA-----------------
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>chr1A_1_TraesCS1A01G233300
CTAGTGTGTCTGTCCTTTGGACCTTATCAAGACGACTTCACGACTGTCTACTATAACAAGGGTTTGCTGGCTTTGGTGAG
GGAGGGGCGATGGCAGCGGTACGCCTTCTGCTTGTTTCCGTGCTTGTAGTCGTTGCTAGGTGGTCTATGGATATAGA-GT
AATTTATATTACTTGTAGTC--------------GTAATGTTTGATGAATAGAGCGGAAGTTTTGCAACAACAACAAGAG
AGCAG----------AATGGGTTGGGTGATAGACAGCATGGGACTGTGGTCGGGCGACCTGTTGGAACACGATAGCGCGG
GAGTGTTTGGCCGGTGGAATATATCAAGCACACTTCCCAACTTTATATCCTAGAAGAAGAAAAGGGGTACATATACCCCC
ACCACACGAATGTGTCGACATTGACAGGCGATCACGCTTACATTAAAAAGCAAACAAATCGGGAAAAAGGTTCAAACGGA
ATAGCTGTAGCCTTTCACGTGGCAGAACAAAGGTGCAAAGTCTAGACATTCGACATGGACGGAAGAAATCGGAACGTCAG
AGCCGGGCGGGAACCTATTCTATTCCCTCCTCGGCCGGCCATGCAGCGGCTGCATGCACACGCATCCTCTGAACTCTGCA
CATGGTCGGTGACGCTACGCCGCCGATATCCCCCGTCCGGAG----TAGCCGAGT-----TCGACCTCCGTCGACGAACC
GACAAAGAGGACTGATCGAACATGATAGTAGATCTCTTACTTGTCAATCTTGTTATTCGCTAGGTCAGCCCACGCATGCG
CGCACGCACGTCCACGTTCCTTTCTGCCTGCTTTTAGAATAGGGGAATAAT----AAGCCCAAACGAATGAATTGGAAAT
GGAAGTAATTCACATGCGGGAAAGTATATCGATCGATCGAGGGAGGCACAGCCACCATGCGTGCACATATATATAACCAT
ATATCTTAGCTACATATG-----------TAGTTGCATGCATAGCTCGAACGAACAAAGGATCAATCCGAGATCGATCGA
TCCGTCGATATGGAGAACGGACAGCCGCAGCCTCCTCCAGGTGACGATCTCGATCCACACATCTCAAAATATCATCTCCA
TGTCGAAGAACAGA--CCACTGGCTAATTCATCAGTGAGCTGTAAATGATCTATCTATCTATCTCAGCTCTAATTTTCTT
GCGCTTGATCAATTGCTGCATAGGCTACCCGACGGTGGACCCGAAACAGCAGGCAGGCGGCAGGAGGAGATGCTGCTGCG
GGCCGTGGCGCCGCAGGACCAAGCA---GCGTGGGCGTGGGGAGACCAGCTTCATCGAAGGATGGTGCGCGCATGGGCAT
GGCTAAAAACGCCCACCATATTTTCCTTCTATCATTTCAATCTCATTTTGGTTTGCTCACCCTGCCGTTTTTCTCCTTGA
TTCGTTTTCTCCAGCCTTGCCGCGCTCTGTTGCTGCTGGCTTTGCGAGCTGTGCTGCGATTGAAGGGGATCCATGCAGCA
TG---CATGCCCACGGTTACAGTCTTACAGGTCACCACAGGCTCTAGCTGCGGCTCTACGTCGTCGGAGCTCTCACATAA
ATAATTCAGTCTTGCTCTGTTAGATGTTCTACGTCATGACCTAGTCCTTTGTGATCTAGTACAAT----------ACGCG
TAGTTATCTTGCATCGTATCAAGGCCCTGTATCTTTTGTATCATCAAATTATCTCATTATCTGTATTCGACATATACTTA
TATTCGAGGTCGTCTTGCGATTTTGAGACCCAGCTTTTAATGTGCAATGCCGCAATGGTCATGCTTAATAGGGTCACGAA
CAAAGTTTTAAATAGACGGCTATAGCCACGCTATAACAATTTGATTAGGGTGCCGCTAAATGGTGTTTATTTACAATTGT
CTGGTAAAATTACAAAATAACAGGCTATATCGCTATTGCTGTGCTATAGCTGTTTGAT---GATGTCGCTATTTGGAATG
GCCCGCGGTTTAAAACT---------AATGGATGTTGAACTCTCATTACAACTTTAAGAAGTATGCATAGGAGATCGAAA
TTTCATGCGAAAGATGAACTATTTTCAATGAAATTTCAACATTACAAATACACCTGTCGAGGCAGATTCATTCTGAAATC
AGCTTCCCTTTTTCTTCTCTCTTCTTTATTAAAACTGACT-----GGCATCCATGCTTGGCTTTACTTGGCAATGCTGAA
TAAACAATAATAT---GTGGTTGTGCAGATCAATGGATGCAAAGGCCGAGGGTTGACCTCCTCAACCCTCCTTCTCGATA
AAAATGCGCAAGTGCAAATGTGCAGTAGTCATGCTCATTAGGGC-ACGGATGGATGGTGAACTCTAGTTATTTTCTTGTA
AGATATTTTTAGGTGATAGAAATTTCCTGCAAAAGATTAGTTCTTTTCAACAAAATTTCAGCATTCTAAGCAAAAGTAAA
TATAAACAAACCTGGTTAATGTCAAGAGTATCACAAATTTATCTATGTTAACTCCAA
>chr1D_4
GTGTGC---CTGTCCTTTGGGCCTTAGCAAGACGAATTCTCAACTGTCTATTACAACAA-GGTTTGCCGGCTTCGGTGAG
GGAGGGACGATGACGGCGGCACGCCTTCTGCTCGTTTCCGTGCTTGTAGTCGTCGATAGGTGGTCTACGGATATAGATGT
AATTTCTACTACTTATGGTGTTCTTTTTACCTTTGTAATGGTTGATGAATAGAGTGAAAGTTTTGCAACGACAAAAAAGG
AAAAAGAAGAAGCAAAATGGGTTGGGTGATAGACAACATGGGACTGTGGTCGGGCAGCCTTTGGGAACACGATAGCGAGC
GAGTGTTTGGTCGGTGGAATATATCAAGCACACTTTGCAACTTTATATCCTAGAAGAAAAAAGGGGGTACATATACCCAC
ACCACACGAATGTGTCGACATTGACAGACGATCACGCTTACATTAAAAGGCAAACAAATCGCGAAAAGT-TTCAAACGGT
ATAGCTGTAGCCTTTCACGTGGCAGAACAAAGGTGGAAAGTCCAGATATTCGACATGGACGGAAGAAGTCGGAACGTCAG
AGCCGGCCGGGAAACTATTCTATTCCCTCCTCTGCCGGCCATGCAGCGGCTGCATGCACATGCATCCTCTCGAGTCCGCA
CGTGGTCGGTGACGCTACGCCGCCGAGATCCCCCGTCCGGAGTACGTAGCTGAGT-----TCGACCTCCGTCGACGAACC
GACAAAGAGGACTGATCGAACATGATAG---ATCTCTTACTTGTCGATCTCGTTATTCGCTAGGTCAGCCCACGCATGCG
CGCACGCACGTCCACGTTCCTTTCTGCCTGCTTTCGGGATTGGGGAATAATGTATAAACCGAAATGAATGCATTAGAAAT
AGAAGTAATTCACATGCGGGAAAGTATAACGATCGATCGAGGGAGGCACGG---CCATGCGTGCACATATATATACATGC
CGCTGTCTGTCCATCTATCTACATAGTACTAGTTGCATACACAGCTCGAACGAACAAAGGATCAATCCAAGATCGATCGA
CCCGTCGATATGGAGAACGGACAGCCGCAGCCTCCTCCAGGTGACGATCGATCTATCA--ATCCCAAAACATCATCCCCA
TGTCGAAGAACACA--CCACTGGCTAACTCTTCAGTGAGTCGTCAATGATCTATCT----ATCTCAGCTCTAATTTTCTT
TCACCTGATCGATTGCTACATAGGCTACCCGACGGTGGACCCGAAACAGCAGGCCGGCGGCAGGAGGAAATGCTGCTGCG
GGCCGTGGCGCCGCAGGACCAAGCCTGCGCGTGGGCGTGGGGAGACCAGTTTCATCGAGGGATGGTGCGCGCATGGGCAT
GGCTAAAAACGCCCACCCTATTTTTCTTCTTTCATTTCAGTCTCATTTTGGCTTACTCACCCTGGCGTTTTTCTCCTTAA
TTCGTTTTCTTCAGCCTTGCCGCGCTCTGTTGCTGCTGGCTTTGCGAGCTGTGCTGCGATTGAAGGGGATACATCATACA
TGCACCATGCCCACGGTTACAGA--------TCACCATAGGCTCTAGCTGCGGCTCTACGTCGTCGGAAATCTTACATAA
TTAATCCAGTCTTGCACTGTTAGATGTTCTACGTCA-----------TTTGTGATCTAGTACAAT----------ATGCG
TAGATATCTTGCATCGTGTCAAGGCCCTGTATCTTTTGTATCATCGAATT--------ATCTGTATTCGACATGTACTTA
TATTCGAGGTCGTCTTGCAATTTCGAATCCCAGCTTTTGATGTGCAA--------TGGTCATGCTTAATCGGGTGATGAA
CAAAATTTTAAAAAGCCCGCTATAGCCATGATATAACAGTTTGATTGGGGTGCCGCTAAATGGTGTTCATTTACAATTGT
C-GGTAAAATTACAAAATAACAAACTATATCGCTATTGTTGCGCTGTAGCTGTTTGAGCAGGATGTCGCTATTTGGAATG
GCCTGCAGTTTGAAACTATTTTGACGAATGGATGTTGAACTCTCATTACAGTCTTAAGAAGTATGCATCGGAGATAGAAA
TTTCATGCGAAAGATGAACTATTTTCAATGATATATCAACATTACAAATTCACCCGT-GAGGCAGATCCATTTTGAAATC
AGGTTTCCCTTTTCTTCTCTC----TTTTTAAAACTGACTTGTTTGGCATCCATGCTTGGTTTTACTTGGCAATGTTGAA
TAAACAATAATACTACGTGGTTGTGTGGATCAATGGATGCAAAGGCCGAGGGTTG---------ACCCTCCTTCTCGATA
ATAATGTGCAAATGCAAATGTGCAATAGTTATGCTCAATAGGGCGACGGATGGATGGTGAACTCTAGTTATTTTCTTGTA
AGATATTTTTAGGTGATAGAAATTTCCTGCGAAAGATTAGTTCTTTTCAACAAAATTTCAGCATTCTAAGCAAAAGTAAA
TATAAACAAACCTTGTTAATGTCAAGAGTATCACAAATTTATCTAGTTAACTC----
>chr1B_5
-TGTGC---CTGTCCTTTGGGCCTTAGCAAGACGACTTCTCGACTGTCTGCTACAACAA-GATTTGCTGGCTTCGGTGAG
GGAAGGGCGACGATGACAGCACGCCTTCTACTTGTT----------------------GGTGGTCTATGAGTATAGATGT
AATTTATATTACTTCCTGTGTTCTTTGTACCGTCATAATGTTTGATGAATAGAGCAGAAGTTTTGCAACAACAAAAAAA-
---------AAGCAAAATGGGTTGGCAGATAGACAACATGGGACTGTGGTCGGGCAGCCTGTGGGCACACGATAGCGCGC
GAGTGTTTGGTCGGTGGAATATATCAAGCACACTTTGCAACTTTATTATCCTAGT-AAAAAAAGGGGTACATAGACCCAC
ACTACACGAACAAATCG----------------------ACATTAAAAGGCAAACAAATCGCGAAAAGT-TTCAAACGGT
ATAGCTGTAGCCTTTCGCGTGGCAGAACAAAGGTGCAAAGTCTAGACATTCGACATGGACGGAAGAAATCGGAACGTCAG
AGACGGCCGGGAACCTATTCTATTCCCTCCCCGGCCGGCCATGCAGCAGCTGCATGCACACGCATCCTCTGAGGTCCGCA
CATGGTCGGTGACGCTACGCCGCCGAGCTCCCCCGCCCGGAGTACGTAGCTTAGCTGAGCTCGATCTCCGTCGACGAACC
GACAAACAGGACTGATCGAGCATGATAG---ATCTCTTACTTGTCAATCTCGTTATTCGCTAGGTCAGCCCACGCATGCG
CGCACGCACGTCCACGTTCCTTTCTGCCTGCTTTCGGAATTGGGGAATAATATATAAGCCGAAATGAATGAATTGGAAAT
ACAAGTAACTCACATGCGGGAAAGTATATGGATCGATCGAGGGAGGCACAG---CCATGCGTGCACATATATATACATGC
CGCTGCCTGTCCATCTATCTACA------TAGTTGCATACACAGCTCGAACGAACAAAGGATCACTCCGAGATCGATCGA
TCCGTCGATATGGAGAACGGACAGCCGCAGCCTCCTCCAGGTGACGATCGATCTATCA--ATCCCAAAACATCATCTCCA
CGTCGAAGAACACGCGCCACTGATTAATTCTTCAGTGAGTTGTACATGATCTATCTATATATCTCAGCTCTAATTTTCTT
TCACTTGATCAACTGCTGCATAGGCTACCCGACGGTGGACCCGAAACAGCAGGCCGGCGGCAGGAGGAAATGCTGCTGCG
GGCCGTGGCGCCGCAGGACCAA------------GCGTGGGGAGACCAGTTTCATCGAAGGATGGTGCGCGCACGGGCAT
GGCTAAAAACGCCCACCGTTTTCTTCTTCTTTCATTTCAGTCTCATTTTAGCTTACTCACCCTGGCGTTTTTCTCC----
TTCGTTTTCTTCAGCCTTGCCGCGCTCTGTTGCTGCTGGCTTTGCGAGCTGTGCTGCGATTGAAGGGGATGCATGCAGCA
TG---CATGCCCACGGTTACAGA--------TGACCGCAGGCTCTAGCTGCGGCTCTACGTCGTTGGAGATCTTACATAA
TTAATTCGGTCATGCTCTGCTAGGTGTTTTACGTCA-----------T----GATCTAGTCCTATGTGGTCTACAATGCG
TAGATATCTTGCATCGTATCAAGGCCTTGTATCTTTGT---------ATCATCGAATTTTCTGTATTTAACATATACTAC
CTAT---GGTCGTCTTGCGATTTTGAGTCCCAGCTTTTGATGTGCAA---------------------------------
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-----------GTGCAAATGTGCAATGGCCATGCTTAATAGGGCGATGAACAAGGTTTTAGAT-----------------
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>SNPs
S-SSSSSSS-----------S-----S------------S-------------S-----S-------------S------
------------S-S----S---------------------------------S-S------------------------
--------------S-S--S------------------------------------------------------S--S--
-SS-S------------------------------S-------------------SS-----S----------------S
----------S------------------------SS---------------------S-------------------S-
---------------------------S--------------------S------------S-----SSS---------S
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------S------------------------------------------------------------------S--S---
--------------------------S-----------------------S-----------------------------
----------------------------SSS-------------------S-----------------------------
----------------------------------SS----S-------------------S---S---------------
S--------------------------------------------------SSS---------------------SSSSS
SSS-S-SS-SSSSSSSSS--------------------S--S--------------------------------------
-------------------------------------------------SSSS-SSSSSS---S-----S----------
------------S-----------------S--------S------------------S---------------------
S-S---------------------------------------------------S-------------S-----------
------------------------S------------------------S------------------------------
-----------------S------S-----S--------S-----------S--S---------S-------------S-
----------S-----------------------------------------------------------S---------
----------------------SSSSSSSSS--------------------------------------S---S------
S-----------------------------------SSSSSSSSSSS-----------------------------S---
---S-----------------------------------------S-------SS-------------------------
---------------------------S----------S--------SSSSSSSS--------------S----S-S---
----S-------S--S-S----------S-S-------S-------S--------------------S------------
-S--------------------SS--------------S--S---S-----------S----------------------
---S--S----S--------------------------------------SSS---------------S------S----
-------------------------------S--S--------------S----S--S---------S----S-------
--S--S--S------------SSSS--S--------------------------------S--------------S----
------------S------------SS----------------------------SSSSSSSSS----------------
-S----S-----------------S------------S------------------------------------------
------------------------------S-------------------------------------------------
-------------S-------------------------------SS-S-SSSSSSS
>forward_136
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------------------------------------TCCGTGCTTGTAGTCGTTGC------------------------
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>reverse_1551
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------------------------------GTCACCACAGGCTCTAGCTG------------------------------
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