>input_sequence_79973
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----------------------------------------------------ATGGCTGCCGTCCTCACCCGCCCGACGC
CGGGCACGGTCCAGTGCTTCGGGCGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGGCTCATCAAG
GTGAACGGCGCCCCCATCGAGCTAATCCGCCCAGAGATGCTCCGCCTCAAGGCCTTCGAGCCCATCATGCTCGCCGGCCG
CTCCCGCTTCAAGGACATCGACATGAGGATCCGCGTCCGCGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGCCAGG
CCGTCGCCAAGGCGCTCGTGGCCTACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCC
CGCTACGACCGTACCCTCCTCGTCGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAG
GTTCCAGAAGTCTTACCGTTGA----------------------------------------------------------
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>chr5A_1_TraesCS5A01G142900
GTGTGGAACCTTTCATTTGCATACTTTGATGGGGTGTATATGCTACTTTGTGAGACCTTGTTTGTGCTTCTGGCGATTTG
CTTTATATATAAAGCGGGAAGAAAACCTATCTCGGTATATCGATACCTACTAATCTGTACCTAATAATAAAGCACATATG
GCTTCTATTCATCCGTCGCACATTTTTGCGAAAAGCCTCTACAGTTTGTTGAAATCAACCCGTATTCCATCTTTAAGGCG
TGACGAATTGTTTTTCTCATTTTACCAAAAAAAACCATGACTTTTATACTAATCAACACGCTGTCCAACTTTAAGTCACA
ACGAATTGGTTTTAATTTTTTTTACATT-----CCCTAATATTTGTGTTAATCAACCCACAATACACCTGGAATAAATAT
ACTGTATTTTTTAAATAATCATATCTTTTAAATCCTGACTCCAATTTTAATATGTTATATATGAAATCTGATTAGAGAAA
CGTGTAGAATTTGAATATGATGTTATTTTTATCTATTAACTAATTAAAAAA--AATGCTATTTAAGATGCAACCTAAATC
AATGGCGCATGGTCCGTTATTCCTTTGTACTGGCATCGATTCGTATTGCAAATGAACATGCCACATGCATTGCTTTGTGC
TGCCTGGCAAGGACCGAGTGAGGGAAATGATTACAATGAATCAATTACAATCTGTAGGCATGTTGTACTTCCATCATCCC
TCTCTCTTTGTATACATTTTTTTTTTTGAGACAAGCTCTCTTTGTATACATGTCCTATGGCTTGGCGGTCGGTGGGTT--
TTTCTAACACAAGGACCAAATGACTAGCCCGAGAGAAGGCCCAACATATTA---CGGCCCATGCAGCTCTTCACTGACTG
ACCAAACCCCAACGCCTCCGGAGTATAAAATCGCCCACCCCTCGCAATCACCTGCCTACGCCGCCGCCGCTCCTCCCTGA
TCCCGCCGCCGCCGCCGCCGCCGCCGCGCTCTCACCAGGCACCACCGCAAGCATGGCTGCCGTCCTCACCCGCCCGACGC
CGGGCACGGTCCAGTGCTTCGGGCGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGGCTCATCAAG
GTGAACGGCGCCCCCATCGAGCTAATCCGCCCAGAGATGCTCCGCCTCAAGGCCTTCGAGCCCATCATGCTCGCCGGCCG
CTCCCGCTTCAAGGACATCGACATGAGGATCCGCGTCCGCGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGCCAGG
CCGTCGCCAAGGCGCTCGTGGCCTACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCC
CGCTACGACCGTACCCTCCTCGTCGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAG
GTTCCAGAAGTCTTACCGTTGATCGGCCTGCAGGATCGTC-GTCTATTGGGTGGTTTTCTCTGCTTTACCTCCCCAGTTT
TAGACTCCGTATGATTAGTTCCGGACCTTGGCAAGATATTGTGGTATGATGTGCTGTGAGATGTTTTAAGACTACTACTG
GGTAGTTGCTCGATTTGTGTTTTTTACTGT-----TATGTTAAGGAATTTTGATATGGTTGCGTACTTGCACTATATTTT
ATGCTATGTTTCAGGTTTCATGCTGAATGATGTTGTCTGATGACTGATGTCGTGTTTAAGTTAGCCGGATGAGTTGAATG
GGGCAAATACAATCACTTTGATCATCTAGGAAATGCCCATGTTGCTCTTTATTCTCTGCATCTTCCATTGGGTCTTCAGT
ATAATTTATATAAGAGTGT--TAAGACTGATTTGCTTAGGATGATACGGTTGATTTCTGTGCTTTACCTCGCAAATTCTA
GAATGTTGATGCTTTGCTCCGGCTCGTGTATAGACATCATGATATGAATGTGATGTGAGATGTTTGTGGATATCGGTTAG
TTGCTGGAATACGACTTTGCTTGATACCCAATTTGAGGAATTTAGATATCATTACCTTGTATTGATGCTATGCCAGTTGA
TGCCATGTTTCTAGTTTCATTAGATTGTTGCAAATAAATATCATTTTGATCAACTATGAATTGCCCATCTTGCTGTTGTT
CTGCACATCTTTGGTTAGGAGTGATCTGTCCGGGCATGTTGTGCTAACTGGTATTCAACTATATCTGCACTCGGGTGTTG
CATATTGTGTGTATATTGATGATGTCAAGTAG--------CAAATGATGCTTGTTATCATCTATGGCAAAAGCACAG---
-----------------CGTTTAGTTCATCTTCCTGTTTTGTTTAACTAGCCTATAGGTAGAAGTTTTGACTGATGGAAA
CATAGTGTAGCTCCTTACATACATGTCGTAGTATCTGCCTATAGGAAAAACATGCTATCTGATTTTAGCAGAATAAGTTT
A-TCCTAAATCAAACACGT
>chr6B_132
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---------------------------------------------------AATCTCTACCTGATAATAAAGCACGTATC
ACTTCTGTTTGCCCGTCACGCCTTTTTGCAAAAAACCTCATAGT----------TTGACCCGCAGTCCATCTTTAAGTCA
GGACAACTTATTTTTCTCACTTTACAT-AAAAACCCTTGACTTTTATACTAATCAACCCGAAGTTCAAATTCAAGTCACG
ACGAAATGTTTTCTGA-ATTTTGACATAAACCCCCTTAATATTTGTGTTAATCAACCCGCAGTCCATCTGGAATAATTAT
TT----CTC--AAACTAATAATATCTTTTAAACCCTAACTTCAATTTCAACATGTTATATATGAAATTTGATTA-AAAAA
TGTGTAAAATCTAAATATGATATTACTTTTATCTATAAACTATT----AAAAAATTGCTATTTAGGGTGGAACCTAAATC
AATGGCGCATGATCCGTCATTCCTTCGTACCTACGTCGACTCGTATTGCAAATGAACATGTCACACACATTGCTCTGTGT
TGCTTGGCAAGGAGTGAGTGAGGGAAATGATTACAATGAATCAATTACAATTCGTAGGCATGTTGTGCTTCCACCAGCT-
TCTCTCTTTGGTACAT----------------------------------------------------------------
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>chr1D_203
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------------------------------------------AGTTTGTTGAAATCTACCAGCAGTCCATCTCTAAGCCA
GGACAAATCATTTTTTCCGTTTTACAT-AAAACCCCATGATGTTTATACCAATCAACCCATAGTCCAACTT-ATGTCACA
ACAAACCATTTTCTGA-AATTTTACATAAAAGCCCCTAATATTTGCGTCAGTCAACCCGCAGTCCATCTAGAATAAATAT
TT----TTTTTAAAATAATCATATCTTTTAAACCCTAACTCCACTTTTAACATGTTATATATGAAATTTGATTA-AAAAA
TGTGTAGAATCTGAATTTGATGTTATTTTTATCCATTAAGTATT----AAA--AATGCTATTTAGGGTGCAACCAAAATC
AATGGTGCATGATCCGTCATTCCTTCATACCGACGTCGATTCATATTGCAAATAAACATGCCGCACGCATTGCTCTATAC
TACTTGGCAAGGAGCGAGTGAGGGAAATGATTACAATGAATAAATTACAATCTGTAGGCATGTTGTACTTCCACCAGCT-
TCTCTCTTTGTA--------------------------------------------------------------------
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>chr4B_213
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----------------------------------------------------AATTAACTCGCAGTCCATCTATAATTGG
TAGCGAATTGTTCTTTGCATTTTACAT-AAAACACCATGTCTTTTATGTTAATAAACTCATAGTTTATCTTTAAGTCAGA
ACAGAT--TTTTTTCA-TTTTTTACATAAAACTCCTTGATATTGGCTTTAATCAGCCAGCAGTCCATCTAGAATAAATGT
TT----CTT---AAATAATCATATCTTTCAAACTCTAACTC-AATTTTAGCATGCTATATATGAAATTA-ATTAGAAAAA
CGTGTAGAATTTGAATATGATGTTATTTT-ATCTATTAAGTATTTTTT--A--AATACTATTGAAGGTGCAACCTTAATC
AATGGCGCATGATATGTCTTTCTTTCGTACCAGCGCCAATCCCTATTGCAAATGAACGTGACACACATATTGTTGGGTGC
TGGTTGGCAAGGAGTGAACGAGGGAAATGATCATAATGAATCCAATATAATCCTTCGGTGTATTGTACTTGCATCAAGT-
TCTCTCTTTGTA--------------------------------------------------------------------
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>chr5B_773
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-----------------------------------------------------------GCTTGGCGGTCGGTAGTTTTC
TTTCTAACACAAGGACAAAATGACTAGCCCGAGAGAAGGCCCAACATATTATCTTGGCCCATGCAGCTCTTCACTGACT-
---AAACCCCAACGCCTCCGAGGTATAAAATCGCCCACCCCTCGCAATCACCTGCCTACGCCGCCGCCGCTCCTCCCCGA
TCCCGCCGCCGCCGCCGTCGCCGCCGCGCCCTCACCAGGCACCACCGCAAGCATGGCTGCCGTCCTCACCCGCCCGACGC
CGGGCACGGTCCAGTGCTTCGGGCGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGGCTCATCAAG
GTGAACGGCGCCCCCATCGAGCTGATCCGCCCGGAGATGCTCCGCCTCAAGGCCTTCGAGCCCATCATGCTCGCCGGCCG
CTCCCGCTTCAAGGACATCGACATGAGGATCCGCGTCCGTGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGTCAGG
CCGTCGCCAAGGCGCTCGTCGCCTACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCC
CGCTACGACCGTACCCTCCTCGTCGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAG
GTTCCAGAAGTCTTACCGTTGATTGGCCTGCAGGATCGTCTGTCTATTGGGTGGTTTTCTCTGCTTTACCTCCCCAGTTT
TAGACTCCGTATGATTAGTTCCGGACCTTGGCAAGATATTGTGGTATGATGTGCTGTCAGATGTTTTAAGACTACTACTG
GGTAGTTGCTCGATT-ATGTTTTTTACTTGTTACCTATGTTGAGGAATTTTGATATGGTTGCGTACTTGCACTGTATTTT
ATGCTATGTCC--GGTTTTATGCTAAATGATGTTGTCTGATGACTGATGTTGTGTTTAAGTTAGCCGGATGAGTTGAATG
GTGCAAATACAATCACTTTGATCTTCTAGGAAATGTCCATGTTGCTCTTTATTCTTTGCATCTTCCGTTGAGTCTTCAGT
ATAATTTATATAAGAGTATTATAAGACTGATTTGCTTAGGATGATACGGTTGATTTCTGTGCTTTACCTCACAAATTCTA
GAATGTTGATGCTTTGTTCCGGCTCGTGTCTAGACACCATGATATGAATGTGACGTGAGATGTTTGAGGATATCGGGTAG
TTGCTGGAATACGACTTTGCTTGATACCCAATTTGAGGAATTTTGATATCATTACCTTGTA---------------TTGA
TGCTATGTTTCCAGTTTCATTAGATTGTTGCAAATAAATATCATTTTGATCAACTATGAATTGCCCATTTTGCTCTTGTT
CAGCACATCTTTGGTTAGGAGTGATCTGTCTGGGCATGTTGTGCGAACTGGTATTCAACTATATCAGCACTCGGCTGTTG
CATATTGTGTGTATATTGATGATGTCAAGTAGAAAACTAGCAAATGATGCTTGTTATCATCTATAGCAAAAGCACAAGTA
TAATAGGTTGTAAATAACGTTTAGTTCATCTTCCTGTTTCGTTTAACTAGCCTATAAGTAGAAGTTTTGATTGATGGAAA
CATAGTGTAGCTCCTTGCATACATGTCTTAGTATCTGCCTATAGGAAAAACATGGTAACTGATTTTAGCAGAATAAGTTT
AATCCTAAATCAAACAC--
>chr5D_773
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-----------------------------------------------------------GCTTGGCGGTCGGTGGGTTG-
TTTCTAACACAAGGACCAAATGACTAGCCCGAGAGAAGGCCCAACATATTACCTCGGCCCATGCAGCTCTTCACTGACT-
---AAACCCCAACGCCCCGGACGTATAAAATCGCCCACTCCTCGCAATCACCTGCCTACGCCGCCGCCGCTCCTCCCTGA
TCCCGCCGCCGCCGCCGT---------GCTCTCGCCAGGCACCACCGCAAACATGGCTGCTGTCCTCACCCGCCCGACGC
CGGGCACGGTCCAGTGCTTCGGGCGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGCCTCATCAAG
GTGAACGGCGCTCCCATCGAGCTGATCCGCCCGGAGATGCTCCGCCTCAAGGCGTTCGAGCCCATCATGCTCGCCGGCCG
CTCCCGCTTCAAGGACATCGACATGAGGATCCGCGTTCGCGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGTCAGG
CCGTCGCCAAGGCGCTCGTCGCCTACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCC
CGCTACGACCGTACCCTCCTCGTCGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAG
GTTCCAGAAGTCTTACCGTTGATTGGCCTGCAGGATCGTC-GACTATTGGGTGGTTTTCTCTGCTTTACCTCCCAAGTTT
TAGACTCCGTATGATTAGTTCCGTACCTTGGCAAGATATTGTGGTATGATTTGCTGTGAGATGTTTTAAGACTACTACTG
GGTAGTTGCTCGATT-GTGTTATTTACTTGTTA----TGTTAAGGAATTTTGATATGGTTGCGTACTTGCACTATATTTT
ATGCT------------------------ATGTTGTCTGATGACTGATGTTGTCTTTAAGTTAGCCGGATGTGTTGAATG
GTGCTAATACAATCACTTTGATCTTCTAGGAAATGCCCATGTTGCTCTTTATTCTTTGCATCTTCCGTTGGGTCTTCAGT
ATAATTTATATGAGAGTATTGTAAGACTGATTTGCTTAGGATGATACGGTTGATTTCTGTGCTTTACCTCACAAATTCTA
GAACGTTGATGCTTTGTTCCGG--CGTGTCTAGACATCATGATATGAATGTGATGTGAGATGTTTGAGGATGTCGGGTAG
TTGCTGGAATACGACTTTGCTTGATACCCAATTTGAGGAATTTTGATATCATTACCTTGTA---------------TTGA
TGCTATGTTTCCAGTTTCATTAGATTGTTGCAAAGAAATATCATTTTGATCAACTATGAATTGCCCATTTTGCTCTTGTT
CAGCACATCTTTGGTTAGGAGTGATCTGTCTGGGCATGTTGTGCGAACTGGTATTCAACTATATCAGCACTTGGCTGTTG
CATATTGTGTGTATATTGATGATGTCAAGTAGCAAACTAGCAAATGATGCTTGTTATCATCTATGGCAAAAGCACAAGTA
TAATAGGTTGTAAATAATGTTTAGTTC-----------------AACTAGCCTATAAGTAGAAGTTTTGATTGATGGAAA
CACAGTGTAGCTCCTTGCATACATGTCTTAGTATCTGCCTATAGGAAAAACATGGTAACTGATTTTAGCAGAATAAGTTT
AATCCTAAATCAAACAC--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----S------------S---S
S-----S--SSS-----S-S-S-------S----S----SSS--------------------S-S------------S--
-------------------------SSS-----------------------------S--SS------------------
--------S----SSSS----------S------------------------------S--S-S--S-------------
SSSSSS-----S--------------------S---S-------------S----------------S--------S---
------------------------------------------S--SSS------------------S-------------
-----------S-----S-------S----S---S------------------------------S--------S-----
---S---------S--------------------------------------------------------------S-SS
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-------------------------------------------------------------------------------S
SSS-----------------SS----------------------------------------------------------
-----------------S--------------------------------------------------------------
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-----------------------S--------S-----------------------------------------------
---------------------------------------------------------------------------S----
-------------------S------------------------------------------------------------
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-----------------------S--------------------------------------------------------
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---------------S------------SS--------------------------------------------------
---------SSSS-----S-----S-------------------------S-----------------------------
-S---------------------S-------------------------------S----------S-------------
-----------------S----------------------------------------------------S---------
----------------S------------S------------------------------------S---------S---
-------------------------------------------S-----------------SSSSSSSSSSSSSSS----
---S-------S--------------------------------------------------------S-----S-----
-S----------------------------S-------------S--------------------S--------S-----
----------------------------------------------------------------------------S---
---------------------------------------S----------------S-------------S---------
----------------S----------S--------------------------S--S----------------------
-----------------SS
>forward_81
-------------------------------------------------------------TTGTGCTTCTGGCGATTTG
C-------------------------------------------------------------------------------
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>reverse_1937
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----------------CTCCGGCTCGTGTATAGACA--------------------------------------------
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