>input_sequence_79970
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------------------------------------------------------------ATGGTTGATATCGAGAACCC
GCCCGCTCCCAG------CACTGGACCCGCCGGAGACGTGGCCGCCGGCGACGACGCGGCCATGGCGGAGCCCAGCCGTC
AAGGCTTCTGGTCGTGGGTAGAAAGGTTCTTCGCCATCCGGCGCCTCCCCGACCACCATCCTGACGCCGGAGACGAGGTC
GCGGAAGTGGAACCTAATCAGTGTAGCAGATGCATCTTCGTACATTGCGGGATTCTGGTTGTGCTCGTCATCGCCGTCGT
CTCCGTACTCCTCCTGGTGCTGATCCGCCGGCCGTCGCATTCCACCGCCGGATCGGTGGTGTACTTCGCTACGCGCGTCC
TTGGGTTCTTGGGCATGGTCTTCAGCGCATGCCGGGGCGCCTTTTTTGTCTATCTTGGAGGTGCGTTAGTTGAGGGGGAT
AAAGAGGCGGAGCGGACCATAGATCGGTTAATGTAA--------------------------------------------
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>chr4D_1_TraesCS4D01G293300
GTTCAGCCGGGCGTGCAGCGGCCGACGCCCTCCGCCGACGCATCGCTTTAATGGCGGAGGTAGTGAGAGGTCGTGTT---
-CTGAGCCGTCTTCAATGCGGAGCAGCGCGCTCTACAGCGGCATGAATGCGGGCAGGTGACGCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCAGCAAACCTCCCTCACTTTTTTCTTTGATTTGCGGAAGAAATCGCG
TCTGGACCGCTCCAT-----GATACAGGTCGGCGTTAGATGGCTTCCGCCATCCATACAGTTCAGTCCGAACGGTTACGG
AAGGTCAGTCCGAATGGTTGCGGAAGGTTTACGAGTCCGCCTTGAAGATGCCCTTATAATTCTTTACGGATGGAGTATTT
TTTTTCCTGGGAGGCGAGGGAGACAAAAGCGTTTGTCCTCCATTGACCGACACGTATGTACTGTACGTAACGTACTGCGT
GTTTCGGAACAAGACGTCGACCGACGCGTACAAGAGCTGCACTTCGACTCGG--------ATACTACTGTACAAGATCGT
CTGTCCTCGTTAAATTGCACCCACGCACCCACGCAGTGCCTTACCAGGTGCTAGCGCTAGTACGTCCCTTCT---GGAAA
AAGAGTGCTAGTACGTACGAGGACAAGCAAGTAGGTCGATCCCAAATTCCCGATCGATCGATGGTTGATATCGAGAACCC
GCCCGCTCCCAG------CACTGGACCCGCCGGAGACGTGGCCGCCGGCGACGACGCGGCCATGGCGGAGCCCAGCCGTC
AAGGCTTCTGGTCGTGGGTAGAAAGGTTCTTCGCCATCCGGCGCCTCCCCGACCACCATCCTGACGCCGGAGACGAGGTC
GCGGAAGTGGAACCTAATCAGTGTAGCAGATGCATCTTCGTACATTGCGGGATTCTGGTTGTGCTCGTCATCGCCGTCGT
CTCCGTACTCCTCCTGGTGCTGATCCGCCGGCCGTCGCATTCCACCGCCGGATCGGTGGTGTACTTCGCTACGCGCGTCC
TTGGGTTCTTGGGCATGGTCTTCAGCGCATGCCGGGGCGCCTTTTTTGTCTATCTTGGAGGTGCGTTAGTTGAGGGGGAT
AAAGAGGCGGAGCGGACCATAGATCGGTTAATGTAAATTTGAACCCTCGTCGGTCGGCTTCGTCGGCGGTCTGCCCTGCC
TCCGATGGCCTTTTGGGCCATGCATGTGTTGAGGACTCAGGTCTTTCGCCGGCGGGAGTGACCCCACTCTCGTTTCTGTT
TGGTTTAACTTCTCGGTTATGGTTGTGCGGCGACGGTGAAGTCCTCGAATAATGTCTTTCATGTCCAATCCCGATCTTGA
TGGTGCATCTTGCGTCGTCGAAGGGCATATGGTGGTGTGCCTCGGTCGGACCTCGCAGAATTCGGTCAGTGTTGGTCTTT
GGTGGGTCTGTTTGGATCCAGTCTTCGGTCATGTGTCTACAGATTTGATCCCTCCAATCTATGCTTCTCTTCATCGATAA
CAATTTTCTCGACATTCTACTATGTTGAGCATCATTGTTATTATGGAAACATAGGATAGCGTAGGATTTATTCCACCTTG
CCTTGTACTCCAAGATGACATTGTACTCATATATATATATATGCCCATGGGGCTCAAGCAATAAAACGAAGAACTATTCC
ACCAATCCTTCTCTCCCTTCTAACATGGTATCAGTTTCCGGGTTCTAAACCCTAGCCGCCCGTCACTTTCACTCCGCGCG
CCGCCCCCGGGGCGGTCGGCCTTCATGACTGCCGCTGGGGGCCGCACCGTCCGTACCTAGGGTTCGTCCGCCGATCGTGT
TAATCGGCTGCCCTAGAAGTCTTTTTCTCAATCCATTGATTGAGGTTTTCTTTCTCGCCGAACGATTGATCGGTGTTATT
CTTCTTTGGTTTTCCGATACATGATCGGATTGACTCGCCCATCGTCGCTTGTCGTCTGCATCGCGCGTCGTCGTCCATCA
CATCACCCAGCACCGCGTGGCCCCGAGAGATCTCACGCGGCACCCGCGCGAGATTGGTTTTCCATGTGGCTGCGGTGGGC
ATTGGATTCCGTGCTGTTCAAAGCACGTTACATGTTCGTGCTTGCATACATGTACGTGCATGATTATAGCCCTCTT
>chr4B_1
GTTCAGCCGGGCGTGCAGCGGGCGGCGCCCTCGGCCGACGTATCACTTTAATGTCGGAGGCAGTGAGAGGTTGCGTCCGC
CCTGAGCCGTCTTCAGTGCGAAGCAGCACGCTCTACAGCGGCATGAATGCGGGCAGGTGACGCCGGGCAGTAGCGCGCAC
GGGAGGGCGGAGGAGTTTTTTGGTGGGCCAGGGCGGTCAGAAGCGAGTTTGAAAGTGGTCTGG-----------------
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-----------------------------ACTCCAGCAAACCTCCACCACTTTTGTCTCCGGTTTGCGGAAGAAATCGCG
TTTGGACCGCTCTGCGGACCGACACATGTCGACGGTGGATGGCTTCCCGG-TCCATACAGTTCAGTCCGATTGGTT----
-------------------GCGGGAGGTTTGCGGGTCCGCCTTGAAGATGCCCTTATAA---------------------
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---------------------------------------------TCCCCGATCACCATCCTGACGCCGGAGACGAGGTC
GCGGAAGTGGAACCTAATCAGTGTAGCAGATGCATCTTCGTACATTGCGGGATTCTGGTTGTGCTCGTCATCACCGTCGT
CTCCGTACTCCTCCTGGTGCTGATCAGCCGGCCATCGCATTCCACCGCCGGATCGGTGGTGTACTTCGCTATGCGCGTCC
TTGGGTTCTTGGGCATGGTCTTCAGCACATGCCGGGGTGCCTTTTTTGTCTATCTTGGAGGTGCGTTAGTTGAGGGGGAT
AAAGAGGCGGAGCGGACCATAGATCGGTTAATGTAAATTTGAACCC----------------------------------
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>chr4A_783
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-----------------------------------------------------------------------GTACTGCAT
GTTTGGGAACAAGATGTCGACCGACGCGTACAAGAGCTGCACT---ACTCGGATACTAGTATACTACTGTACAAGATCGT
GTGTCCTCGTTAAATT--------GCACCCACGCAGTGCCTTACCAGGTGCTAGCGCTAGTACGTCCCTTCT---GGAAA
AAGAGTGCT-GTACGTACGAGGACAAGCAAGTAGGTCGATCCCGAATTCCCGATCGATCGATGGTTGATATCGAGAACCC
GCCTGCTCCCAGTCGCAGCACTAGTCCCGCCGGAGACGC---------CGACGACGCGGCCATGGCGGAGCCCAGCCGTC
ACGGCTTCTGGTCGTGGATAGAAAGGTTCTTCGTCATCCGGCGCCTCCCCGACCAGCATCCTGACGCCGGAGACGAGGTA
GCGGAAGTGGAACCTAATCAGTGTAGCAGATGCATCTTCGTACATTGCGGGATTCTCGTTGTGCTCGTCATCGCCGTCGT
CTCCCTACTCCTCCTGGTGCTGATCCGCCGGCCGTCGCATTCCACCGCCGGATCGGTGGTGTACGTCGCCACGCGCGTCC
TTGGGTTCTCGGGTCTGGTCGTCGGTGCTTGCTGGGGCACCTTTTTTCTTTATCTTGGAGGTGCGTCGGTTGAGGGGGAT
AAAGAGGCAGAGCGGACCATAGACCGGTTAATGTAAATTTGGACCCTCGCCGGTCGGTGTTGTCGGCGGTCTGCCCTGCC
TCTGATGACCTTT-GGGCCGTGCATGTGTTGAGGACTCCGGTCTTTCGCCGGCGGAAGTGACCCGACTCCAGTTTCTGTT
TGGTTCAACTTCTCGGTTA-------------------------------------------------------------
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>chr4B_826
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----------------------------------AGCTGCACTCCGACTCGGATACT-------------ACAAGACCGC
CTGTCCTCGTTAAATT--------GCACCCACGCAGTGCCTTACCAGGTGCTGGCGCTAGTACGTCCCTTCTTCTGGAAA
AAGAGTGCTAGTACGTACGAGGACAAGCAAGTAGGTCGATCCCGAATTCCCGATCGATCGATGGTTGATATCGAGAACCC
GCCTGCTCCCAG------CGCTGGTCCCGCCGGAGACGCGGCCGCCGGCGACGACGCGGCCATGGCGGAGCCCAGCCGTC
AAGGCTTCTGGTCGTGGGTAGAAAGGTTCTTCGCCATCCGGCGCCTTCCCGACCACCATCCTGACGCCGGAGACGAGGTC
GCGGAAGCGGAACCTAATCAGTGTAGCAGATGCATCTTCGTACATTGCGGGATTCTGGTTGTGCTCGTCATCGCCGCCGT
CTCCGTACTCCTCCTGGTGCTGATCCGCCCGCCGTCGCATTCCACCGCCGGATCGGTGGTGTACTTCGCTACGCGCGTCC
TTGGGTTCTTGGGCATGGTCTTCAGCGCATGCCGGGGCGCCTTTTTTGTCTATCTTGGAGGTGCGTTAGTTGAGGGGGAT
AAAGAGGCGGAGCGGACCATAGATCGGTTAATGTAAATTTGAACCC----------------------------------
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>SNPs
---------------------S--S-------S-------S---S--------S------S----------S-S--S---
---------------S----S------S-----------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------SS-------S---SS-S------------------
-S----------SSS-------S---S----S--S-S----------SSSS-------------------SS----SSSS
SSSSSSSSSSSSSSSSSSS----S------S--S-------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-
----S---------S----------------------------S------------------------------------
----------------SSSSSSSS--------------------------------------------------------
-------------------------------------------S------------------------------------
---S--------------------S-------------S-----------------------------------------
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-------------------------------------------------S-------SS-S-------------------
--S----S-----S-----S------------------S----------------S--------S----SS---------
-----S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_647
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-------------------------------------------------------------------CGAACGGTTACGG
AAGGTCA-------------------------------------------------------------------------
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>reverse_2261
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--------------------ATGATCGGATTGACTCGCCC----------------------------------------
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