>input_sequence_79967
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----------------------------------------------------------------------------ATGG
CGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCCGCCGAGGTCGCGGAGAAGGCCGAGAAGACCCTCGCCGGC
AAGAAGCCCAAGGCGGAGAAGCGTCTGCCGGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGCCGGAAGAAGAA
CAAGAAGAGCGTGGAGACCTACAAAATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCA
AGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTAC
AACAAGAAGCCCACCATCACGTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGC
CGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCAGCAACTAG----------------------------------
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>chr4B_1_TraesCS4B01G204400
TTCTGCTTGTTGTAACCAATATTTTTTTGCTACCTCTGGCATTTCAGATTTGCTGGAACCTACTCCTATTTTGTTAATTT
GCTACCGCCAATGTTTGGATTGCTGGAACCAGGTCTATTTTTTT-GCTACAACCGGCATTTTGGTTTGCTGAAACAACGC
ACAATTTTACTC-TTTTTGCTACCAATGACGTTTTTGGTTTGCTG-AGCCAACTTTAATTTTTGCTACCACCGGTGTTTT
TTAGTTTGCCGAAACATCGTCCAATCTTGCATCTTTGCTTCCATCGTTTTTGCTG------GAACCAACGCTAAATTTTG
GTACCATTGTTGTTGGTTGAGAACCTTGGTGTTGCCTCCATTAATTCTGGGAGGGGGGGGGGGTGTGG-------CGGCG
AGGGGTGAACGTCGACGACGATGGTCGACAGCGAAAGACGGATGGGTGTTGTGCGACACGGAGGAGGAGGGCTGCCCATG
TCTCCCGAGTTTTCTTATCAGATTTTTACGCAAAGACGATTGGGATTTTCCTTTTCTTTTCTCTAGATCTGACGGTTACA
TGTGATTTTATCCAACGCTAGCATGCTGAACGGCCCAATTTCGCCCGGTCC-GCCGGTGTCTAGCATTCGCCTTAATTCT
TCGATCATTTTTTCCG---AAGAATTATAAAGCTTTTTAGTAGAAAGGCTAGGAGTGTGTTTACAAAAAATAGAAAGAAA
GCAAAAATACCACGCGCGGGGGCGCCATCAATTTTGTCACCC----------------ATAGGAGCCCGTGGAAAACCGA
GGCACGTCCATCTTCATCTCCACCGTGCACTCCCCGCTCCCCAAATCCGACGCCCCACACAAGTGCCACCTCACGGATCC
GCGCCCCGCCCCTCTCCACCAATCCCCTTCCACCGCACGCCTCTATATTAATCCCCTCCCCTGCTCCACCACAACACACC
AAAGAAAAGTCTCCCTCGCAACAACTCGCCCATTTCCCTCCACAGCAGCCCGACACCTCAAGCTCAATCCCGATCGATGG
CGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCCGCCGAGGTCGCGGAGAAGGCCGAGAAGACCCTCGCCGGC
AAGAAGCCCAAGGCGGAGAAGCGTCTGCCGGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGCCGGAAGAAGAA
CAAGAAGAGCGTGGAGACCTACAAAATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCA
AGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTAC
AACAAGAAGCCCACCATCACGTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGC
CGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCAGCAACTAGGGTTCCGTCGCGGTGTATCTCTAGGGTTCCGTCG
CCGTGTTCTCTTCTACTAGCTTTTGTGTTGCCGTCGCTTGTGTCCATGTGTGTCGTTATAGGTAGGTAGCTCGTCTGCTT
TGTAAATCGTGCCAGGTTGTAATGGACGGCTTTGATTTCAAGTACTAATGGAGGAGTTTGTATGTGCCTTTTCAATCTGC
GAGCTGTTGCCTCATTCTGTC-AAATAATTGGGGATCTAGGGTTTGAGGGAGTGAGTGCTCGAGCTGCCGCCGCCGCCAC
TGCCGCTGCTGCCGATGATGTTGCGAGGAGGGAGGAGGGTGATTCGTTTGGCCTCTCGGCACCTGGGGTCCCATGGCTTC
AGCACTGAGATATTTGTGAGCAGTAAGCAATCAACCTCTGTTTTCTCCCCATTCCCGTGCTTGCATAAATGCTTGGCA--
--CTTGTATGCGATGAATTGGTGTTGTGTGATTA----TGGTGACGATTATTATCTGCAACTTCTGGTTCATGCTCGAGA
GTGTTGTTCGCCTGTGACTGAAGTTGTTTGGGTGTGGATGGATTGAGCACTGGTTGGTGTGATGCCGGTCTCCTTTGCTT
TC--TTTTTCATTATGAACATGAACATCAGCT------------------------------------------------
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------------------------------------------------------TTAGCATGCCAGGGAATATTTCGAGC
CTGCTACTGATTTA--GGAGCTTTAGAATATGATTCCTTTGGACAGTTACATAGCAACACCACGGATGCTTCATAC---C
ATCTTTTGAGAACTTTATCACGGGCTGGATGGGTTTGCCTGACGTCATCTTTTCATTGTTCTAGTGCTGATGAAGTTCCA
CACATGCTGACTGATTATGTGTGTCGATGAAAACTAATTGTTGCTCTATGGCCAGTACAATTTGTAGCCGAAAGTTGCTT
CTGCCAAAAGTAGACTGGTTGCCGTTTTACCACCTGAAATTTAGTATCTATTCTACTTGGGCGGCACTTTATCATCTTGG
ATGAAATGTCTGCGATCAACAATTT--GTTTTCATCTCTAGTTTGT
>chr4D_62
-------------------------------------------------------------ACTCCCAATTTGTTAATTT
GCTGCAGCCAATGTTTGGATTGCTGGAACCAGCTCTATTTTTTTTGCTACAACCAGCATTTCGGTTTGCTGAAACAACGC
ATAATTTTACTTTTTTTTGCTACCAATGAC-TTTTTGGTTTGCTGGAGCCAACTTCAATTTTTGCTACCACTGGTGTTTT
TTAGTTTGCT---ACATCGTCCAATCTTGCATTTTTGCTTCCATCGTTTTTAGTTTTGCTAGAACCAACGCTAAGTTTTG
CTACCATTGTTGTTGGTTGCCAGCCCTCACATCGTCTCAATTAATTCTAAGGGGGGGAGGGGGAGGGGGTAGCACCGGCG
AGGGGTGAGCATCAACGGCGATGGTCGACAACGATAGACAGATGGGTGTTGTGTGACACGGAGGAGGAGGGCCGG-CATG
TCTCCCGAGTTTTCTTATTAGATTTTTACGCG-AGACGATTGGGATTTCT-TTTTCTTTCCTCTAGATCCGACGGTTACA
TGTGATTTTATCCAACGCTAGCGTGCTGAACGGCCCAAATTTCGGCCGGTTTGCCGGCGCCTAGCATTCGTCTTAATTCT
TCGATCATTTTTTTCTTCTAAGAATTATAAAGGTTTTTAGTGGAAAGGCTCGGGGTGCGTTTAC-AAAAACAGAAAGAAA
GCAAAAATACCACGCGCGGGGGCGCCATCAATTTTGTCACCCCGCCCCTTGGGAAGCCATACGAGCCTGCGGAAAATTGA
GGCACGCCCATCTCCATCTCCACCGTGCACTCCCCGCTCCCCGAATCCGACGCCCCACACAAGTGCCACCTCACGGATCC
GCGCCCCGCCCCTCTCCACCAATCCCCTTCCACCGCGCGCCTCTATATTAATCCCCTCCCCTGCTCCACCACAACACACC
AAAGAAAAGTCTCCCTCGCAACAACTCGCCCATTTCCCTCCACACCAGCCCGACACCTCAAGCTCAACCCCGATCGATGG
CGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCCGCCGAGGTCGCGGAGAAGGCCGAGAAGACCCCCGCCGGC
AAGAAGCCCAAGGCGGAGAAGCGGCTGCCGGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGGCGGAAGAAGAA
CAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCA
AGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTAC
AACAAGAAGCCCACCATCACGTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGC
CGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCAGCAACTAGGGAGGGAA---GGTGTATCTCTAGGGTTCCGTCG
CCGTGTTCTCCT---CTAGCTTCTGTGTTGCCGTCGGTCGTGTCCATGTGTATCGTTCTAGGTAGGTAGCGCGCCTGCTT
TGTAAATCGTGTCAGGTTGTGATGGACGGCTTTGATTTCATTTAATGGGAGAGG---TTGTTTGTGACTTCTCAATCTGC
TAGCTGTTGCGTCATTCTGCCAAAATAATTGGGGATCTAGGGTTTGAGGGAGTGGGTGCTCGA---GCCGCCGTCGACGC
CGCCGCCACTGCCGATGATGTTGCGA---G---GGAGGGTGATGCGTTTGGCCTCTCGTCACTTGGGTTCCCATGGCTTC
AGCACCGAGATATTTGTGAGCAGTAAGCAATCATCCTCTGTTTTCACCCCATTCCCGTGCTTGAATAAAATGCTTGGTAC
TCCTTGTATGCGATGAATTGGTGCTGTGTGATTA----TGGTGACGATTATTGTCTGATACCTCTGGCTCATGCTCGAGA
GTGTTGTTCGCCTGTGGCTGAAGTTGTTTGGGTGTGGATGGATTGAGCACTGGTTGGTGTGGTGCCGGTCTCCTTTGCTT
TC--TTTTTCATTATGAACATGAAC-------------------------------------------------------
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-------------------------------------------------------------GCCAGGGAATGTTTCGAGC
CTGCTACTGAT--A--GGAGCTTTATAATATGATTCCTCTGGACAGTTACATAGCAACACCACGGATGCTTCATACTACC
ATCTTTTGAGAACTTTATCACGGGCTGGATGGGTTTGCCTAACGTTATCTTTTCC-TGTTCTAGTGCTGATGAAGTTTCA
CACATGCCGACTGATTATGTGTGTTGATGAAAACTAATTGTTGCTGTATGGGCAGTACAATTTGTAGCCACAAGTCGCTT
ATGCCAAAAGTAGACTGGTTGCCGTTTTACCACCTGAAATTTAGTATCTATTCTACTTGGGTGGCACTTTATCATCTTGG
ATGAAATGTCTGGTG--AACAATTT--GTTTTCATCTCTAGTTTGT
>chr4A_779
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--------------CATCTCCACCGTGCACAGCCCGCTCCCGGGATCCGATGGCCTACACAAGTGCCACCTCACGGATCC
CCGCCCCGCCCCTCTCCACCAATCCCCTCCCACCGCGCGCCTCTATATTAATCCCCTCCCCCGCTCCACCACAACACACC
AAAGAAAAGTCTCCCTCGCAACAACTCGCCCATTTCCCTCCACACCAGCCCGACACCTCAAGCTCCATCCCGATCGATGG
CGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCCGCCGAGGTCGCCGAGAAGGCCGAGAAGACCCCCGCCGGC
AAGAAGCCCAAGGCGGAGAAGCGGCTGCCGGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGCCGCAAGAAGAA
CAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCA
AGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTAC
AACAAGAAGCCCACCATCACGTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGC
CGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCAGCAACTAGGGTTCCGTCGCGGTGT--CTCTAGGGTTCCGTCC
CCGTGTTCTCTTCTAGTAGCTTTTGTGTCGCCGTCGGTCGTGTCCATGTGTATCGTTATAGGTAGGTAGCGCGCCTGCTT
TGTAAATCGTGTCAGGTTGTGATGGACGGCTTTGATTTCAATTAATGGAAGAGG---TTGTGTGTGACTTCTCAATCTGC
TAGCTGTTGCGTCATTCTGCCAAAATAATCGGGGATCTAGGGTTTGAGGAGCTGGGTGCTCGA------GCTGCCGCCGC
CGCCACTGCTGCCGGTGATGTTTCGAGGAG---GGACGCTGATGCGTTTGGCCTCTCGGCACCTGGGTTCCCATGGCTTC
AGCACCGAGATATTTGTGAGCAGTAAGCAATCGTCCTCTGTTTTCTCCCCGTTCCTGTGCTTGCATAAATGCTTGGCA--
--CTTGTATGCGATGAATTGGTGCTGCGTGATTAGGTATGGTGATGATTATTGTCTGCGACCTCTGGTTCATGCTCGA--
GTGTTGTTCGCCCATGACTGGGGTTGTTTGGGTGTGGATGGATTGAGCACTGGTTGGTGTGGTGCCGGTCTCCTTTGCTT
TCCTTTTTTCCTTATGAACATGAACATCAGCTTTAGGGCTCATTCGGTTTGGAGGAAATCAAAACGTAAGAATTAGTAGT
ATAGAAATTTGATAGGATGACACTTGCCATCCTAAGGATTTGACTTGCCTCGTTCCTACGCGCAAAATGAGCTTTGAGGC
CTCTTTTGGTTCATAGGATAGGATTATCGTAGGAATAAGAATTTTGTAAGAAATGAGATGACATGTATCTCAAATCCTAT
GAGTAGGAATAGGAAACGAGATGTCATTTGGTTGACACCAAAGGAATTTTTTCATTGAGTCTAGGCTCATTTTTATTTTC
CTATGAAATGTGAAGGATAGAAATCAATCCTATGTAGGAATAGAAATCTATTCCTATGAACCAAAGTGCTCTAAAGAAAA
AAATCCTATCCTCTAGAATTCCTATGAAATTCCTCCAAACCAAAGCAGGCCTGAGTGGATGTGTAGTTTTCTCCAAAAAC
ACTGGAAATGAGTAGTATTCCTATGAAATTCCTGTACGCATTTCCTACACACCGAATGCATATATAGGAAAATTTCCTCC
GGACTCCTTGTTCCTATGTTTTTCCTACAAAAATCCTTCAAACCGAATGAGGCCTTAGCATGCCAGGGAATGTTTCGAGC
CTGCTACTGAT--ATAGGAGCTTTAGAATATGATTCCTTT-GACAGTTACATAGCAACACCACGGATGCTTCATAC---C
ATCTTTTGAGAACTTTATCACGGGCTGGATGGGTTTGCCTAACGTTATCTTTTCCTTGTTCTAGTGCTGACGATGTTTCA
CACATGCCGACTGATTATGTGTGTCGATGAAAACTAATTGTTGCTCTATGGCTAGTACAATTTGTAGCCGCAAGTTGCTT
CTGCCAAAA----ACTTGTTGCCATTTTAGCACCTGAAATTTGGTATCTATTCTACTTGGGGGGCACTTTATCATCTTGG
ACGAAATGTTTGCGATGGACAATTTTAGTTTTCATCTCTAGTTTGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S-----------
---S-S--------------------------S---------------------S------S------------------
-S---------S------------------S------------------------S---------------S--------
---------SSSS-------------------S------------------SS-S-------------------S-----
S------------------SS-S--S-SSSS-S-S---S---------SS-S-----S-----S-S--------------
--------S-S--S---S------------S---S----S-------------S------------------S-SS----
------------------S------------SS---------------SSS--------S---------S----------
----------------------S---------------S--SSSS-S-SSS------S-S----------S---------
-------------S-S----------------S--------S--------S--S---S------S-----S---------
-------------------------------------------------------------S-----S-S------SS--
------S------S----------------------------S-------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------S-----------------------------------
------------------------------------------------------------------------S-------
-----------------------S--------------------------------------------------------
------------------------S-------------------------------------------------------
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------------------------------------S-S------------S------------------S--S------
-----------S--------S--------------------S--S-SSSS----SSS----S----S---S---------
S---------S--------S----------------------------------S--------SSS------------S-
S-----------------------------SSS----------S-----------------------S------------
-----S---------------------------S----------------------------------------------
-----------------------S----------------------------S-----S--S------------------
-------------------------------------------------------------S------------------
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-----------------------------------------------------------------------S--------
-----------SS-------------------------------------------------------------------
----------------------------------------S----S--------S----------------------S--
-------S--------------------------------------------------------------S---------
-------------------------------------------------------------S------------------
----------------S-----------------------------
>forward_359
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-------------------AGAACCTTGGTGTTGCCTCC-----------------------------------------
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>reverse_1612
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-----------CCAGGTTGTAATGGACGGCT-------------------------------------------------
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