>input_sequence_79963
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-----------------------------------------------ATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAG
AAGAAGCCGGCCGCCGAGGTCGCCGAGAAGGCCGAGAAGACCCCCGCCGGCAAGAAGCCCAAGGCGGAGAAGCGGCTGCC
GGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGCCGCAAGAAGAACAAGAAGAGCGTCGAGACCTACAAGATCT
ACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATC
AACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTACAACAAGAAGCCCACCATCACGTCCAGGGA
GATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCA
AGTTCACCAGCAACTAG---------------------------------------------------------------
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>chr4A_1_TraesCS4A01G099900
TTTTTGAAATACTACGTTCCCCAACAGCGTCGCCGCCGACGCCCCACAACGCGCACAAGCGGGAGTGCAGCGCGGCCAAG
CGCTTGTCATCGTTGTCCTACCACCACGCGCACCACCGGCGGATGGTCATGGCCGGCCTGCCGCTCGAGGCACACGACGC
CGAGGCTCCACGAAGACTTGGTTGGCTCGCGGTGCTTCCAGGAGGACGTGGGGGCCGCGGCGCAGGTGCCGGTCAGGAGC
CTCCACACTCGCCATGGTGCGGTCTACGACGTCGTCCACACTTGAGGATGAGCCTTGGTCTGGCTGCGGCGCGTACATCC
GTACCCAGCCGCTCCTCCACGTCGCAAAGGTGCTTTAGTCTGGTCTAGCTCGAGTGGACGGCGTTGGGAGCACGCGAGCG
CGCAAGCAAGGTGGCTTCGTTGCCGGCACGGGGCTCGACCAGGTAGGGCTGTGAGCGCGGGAGCTCGGGGCAGTTCAAGG
AAAGACTGAGCCACCAGTAGGCGTTCGACAGAATGCCGACCCCGTTAGACGGATCAACGGACCCAGATAAAAAAGGAAAC
ACAGACGAACGGACGAGCGACCCAAACAAATAAAAAACAAACAAAACGCGGGTCAGTTTGGTCGTTCGGTTGGAATTGCT
AAAAAGCTATAGCTTAGGGGTGCGTTTAG-AAAACAGAAAGAAAGCAAAAATACGACGAGCGAGGCCGCCATCAATTTTG
TCACCCCGCCCCTTCCGAGTTTGGAAACCATGCGAGCCTGCGGGAAATTAAGGCACGCC------CATCTCCACCGTGCA
CAGCCCGCTCCCGGGATCCGATGGCCTACACAAGTGCCACCTCACGGATCCCCGCCCCGCCCCTCTCCACCAATCCCCTC
CCACCGCGCGCCTCTATATTAATCCCCTCCCCCGCTCCACCACAACACACCAAAGAAAAGTCTCCCTCGCAACAACTCGC
CCATTTCCCTCCACACCAGCCCGACACCTCAAGCTCCATCCCGATCGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAG
AAGAAGCCGGCCGCCGAGGTCGCCGAGAAGGCCGAGAAGACCCCCGCCGGCAAGAAGCCCAAGGCGGAGAAGCGGCTGCC
GGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGCCGCAAGAAGAACAAGAAGAGCGTCGAGACCTACAAGATCT
ACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATC
AACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTACAACAAGAAGCCCACCATCACGTCCAGGGA
GATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCA
AGTTCACCAGCAACTAGGGTTCCGTCGCGGTGT--CTCTAGGGTTCCGTCCCCGTGTTCTCTTCTAGTAGCTTTTGTGTC
GCCGTCGGTCGTGTCCATGTGTATCGTTATAGGTAGGTAGCGCGCCTGCTTTGTAAATCGTGTCAGGTTGTGATGGACGG
CTTTGATTTCAAT---TAATGGAAGAGGTTGTGTGTGACTTCTCAATCTGCTAGCTGTTGCGTCATTCTGCCAAAATAAT
CGGGGATCTAGGGTTTGAGGAGCTGGGTGCTCGA------GCTGCCGCCGCCGCCACTGCTGCCGGTGATGTTTCGAGGA
G------GGACGCTGATGCGTTTGGCCTCTCGGCACCTGGGTTCCCATGGCTTCAGCACCGAGATATTTGTGAGCAGTAA
GCAATCGTCCTCTGTTTTCTCCCCGTTCCTGTGCTTGCATAAATGCTTGGCA----CTTGTATGCGATGAATTGGTGCTG
CGTGATTAGGTATGGTGATGATTATTGTCTGCGACCTCTGGTTCATGCTCGA--GTGTTGTTCGCCCATGACTGGGGTTG
TTTGGGTGTGGATGGATTGAGCACTGGTTGGTGTGGTGCCGGTCTCCTTTGCTTTCCTTTTTTCCTTATGAACATGAACA
TCAGCTTTAGGGCTCATTCGGTTTGGAGGAAATCAAAACGTAAGAATTAGTAGTATAGAAATTTGATAGGATGACACTTG
CCATCCTAAGGATTTGACTTGCCTCGTTCCTACGCGCAAAATGAGCTTTGAGGCCTCTTTTGGTTCATAGGATAGGATTA
TCGTAGGAATAAGAATTTTGTAAGAAATGAGATGACATGTATCTCAAATCCTATGAGTAGGAATAGGAAACGAGATGTCA
TTTGGTTGACACCAAAGGAATTTTTTCATTGAGTCTAGGCTCATTTTTATTTTCCTATGAAATGTGAAGGATAGAAATCA
ATCCTATGTAGGAATAGAAATCTATTCCTATGAACCAAAGTGCTCTAAAGAAAAAAATCCTATCCTCTAGAATTCCTATG
>chr4D_657
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----------------GGGGTGCGTTTACAAAAACAGAAAGAAAGCAAAAATACCACGCGCGGGGGCGCCATCAATTTTG
TCACCCCGCCCCTTG-------GGAAGCCATACGAGCCTGCGGAAAATTGAGGCACGCCCATCTCCATCTCCACCGTGCA
CTCCCCGCTCCCCGAATCCGACGCCCCACACAAGTGCCACCTCACGGATCCGCGCCCCGCCCCTCTCCACCAATCCCCTT
CCACCGCGCGCCTCTATATTAATCCCCTCCCCTGCTCCACCACAACACACCAAAGAAAAGTCTCCCTCGCAACAACTCGC
CCATTTCCCTCCACACCAGCCCGACACCTCAAGCTCAACCCCGATCGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAG
AAGAAGCCGGCCGCCGAGGTCGCGGAGAAGGCCGAGAAGACCCCCGCCGGCAAGAAGCCCAAGGCGGAGAAGCGGCTGCC
GGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGGCGGAAGAAGAACAAGAAGAGCGTGGAGACCTACAAGATCT
ACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATC
AACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTACAACAAGAAGCCCACCATCACGTCCAGGGA
GATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCA
AGTTCACCAGCAACTAGGGAGGGAA---GGTGTATCTCTAGGGTTCCGTCGCCGTGTTCTCCT---CTAGCTTCTGTGTT
GCCGTCGGTCGTGTCCATGTGTATCGTTCTAGGTAGGTAGCGCGCCTGCTTTGTAAATCGTGTCAGGTTGTGATGGACGG
CTTTGATTTCATT---TAATGGGAGAGGTTGTTTGTGACTTCTCAATCTGCTAGCTGTTGCGTCATTCTGCCAAAATAAT
TGGGGATCTAGGGTTTGAGGGAGTGGGTGCTCGAGC---CGCCGTCGACGCCGCCGCCACTGCCGATGATGTTGCGA---
G------GGAGGGTGATGCGTTTGGCCTCTCGTCACTTGGGTTCCCATGGCTTCAGCACCGAGATATTTGTGAGCAGTAA
GCAATCATCCTCTGTTTTCACCCCATTCCCGTGCTTGAATAAAATGCTTGGTACTCCTTGTATGCGATGAATTGGTGCTG
TGTGATTA----TGGTGACGATTATTGTCTGATACCTCTGGCTCATGCTCGAGAGTGTTGTTCGCCTGTGGCTGAAGTTG
TTTGGGTGTGGATGGATTGAGCACTGGTTGGTGTGGTGCCGGTCTCCTTTGCTTTC--TTTTTCATTATGAACATGAAC-
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>chr4B_779
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-----------------------------------------------------------------CATCTCCACCGTGCA
CTCCCCGCTCCCCAAATCCGACGCCCCACACAAGTGCCACCTCACGGATCCGCGCCCCGCCCCTCTCCACCAATCCCCTT
CCACCGCACGCCTCTATATTAATCCCCTCCCCTGCTCCACCACAACACACCAAAGAAAAGTCTCCCTCGCAACAACTCGC
CCATTTCCCTCCACAGCAGCCCGACACCTCAAGCTCAATCCCGATCGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAG
AAGAAGCCGGCCGCCGAGGTCGCGGAGAAGGCCGAGAAGACCCTCGCCGGCAAGAAGCCCAAGGCGGAGAAGCGTCTGCC
GGCGTCCAAGTCCGCCAAGGAGGGCGGCGACAAGAAGGGCCGGAAGAAGAACAAGAAGAGCGTGGAGACCTACAAAATCT
ACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATC
AACGACATCTTCGAGAAGCTCGCCGGCGAGGCGGCCAAGCTGGCCAGGTACAACAAGAAGCCCACCATCACGTCCAGGGA
GATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCA
AGTTCACCAGCAACTAGGGTTCCGTCGCGGTGTATCTCTAGGGTTCCGTCGCCGTGTTCTCTTCTACTAGCTTTTGTGTT
GCCGTCGCTTGTGTCCATGTGTGTCGTTATAGGTAGGTAGCTCGTCTGCTTTGTAAATCGTGCCAGGTTGTAATGGACGG
CTTTGATTTCAAGTACTAATGGAGGAGTTTGTATGTGCCTTTTCAATCTGCGAGCTGTTGCCTCATTCTGTCAAA-TAAT
TGGGGATCTAGGGTTTGAGGGAGTGAGTGCTCGAGCTGCCGCCGCCGCCACTGCCGCTGCTGCCGATGATGTTGCGA---
GGAGGGAGGAGGGTGATTCGTTTGGCCTCTCGGCACCTGGGGTCCCATGGCTTCAGCACTGAGATATTTGTGAGCAGTAA
GCAATCAACCTCTGTTTTCTCCCCATTCCCGTGCTTGCATAAATGCTTGGCA----CTTGTATGCGATGAATTGGTGTTG
TGTGATTA----TGGTGACGATTATTATCTGCAACTTCTGGTTCATGCTCGAGAGTGTTGTTCGCCTGTGACTGAAGTTG
TTTGGGTGTGGATGGATTGAGCACTGGTTGGTGTGATGCCGGTCTCCTTTGCTTTC--TTTTTCATTATGAACATGAACA
TCAGCTTTAG----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS------------S-------------------------S---S---S--S--------------
--------------SSSSSSSS----S----S-----------S-----S------------------------------
-SS---------S-S------S-S--S------------------------S---------------------------S
--------------------------------S-----------------------------------------------
------------------------------------S-------------------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------S--------------------S----------------
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--------------------------------------------------S---------------S------------S
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--------------------------------S-----------------------------------------------
S-------------------SSS-------------------S------------S---------S-------S---SSS
----------S-S-------------------------------------------------------------------
------S-----------------S----S--------------------------------------------------
S-------SSSS------S-------------S---------------------------------SS------SS----
--------------------------------------------------------SS------S---------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_616
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------------------------------------ACAAACAAAACGCGGGTCAG------------------------
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>reverse_2091
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----------GGCTCATTCGGTTTGGAGGA--------------------------------------------------
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