>input_sequence_79961
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----------------------------ATGGCGCAGGCGATCGAGGCTCAGAGGGAGGGCGCGGAGGTGTACCACGGGG
CGGCGCTGTGCGCGGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCGCTGGCGGACATC
CAGGAGGTGGGCTACAACCGCGCCAGTGGCTTCGTCTGGCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGGAGGCAGGTCTCGTACGCCACCGAGGTGACGGCCTTCGTCGAGGACTGCAAGATGAAGCGCATGACCGGGGTCAAGA
GCAAGGAGCTTCTCATCTGGATCACCCTCTGCGACATGTACATCGACAAGGACGACCCCTCCAAG-ATCACCTTCAAGAC
GCCCACCGGA-CTCGGGAGGACCTTCCCCGTCTCCGCCTTCGGGAAAGAGGACTGCAAGGAG------GCCGCGGTGGCC
AAATAA--------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G148700
CTCTGGCCGCCCTCTAGGCCAGGTTGAACCGCCAGCCTCCGCCACCCGCGGCGCTTCCGCGACCGCCTCACCCTCCCCTT
GACCTCC-CCCACCGCCAGGTTTGCCGCCGCCGCCGGCCATCCCTCTAGCCCTGCCCCCATCTAGTTTTC-TTCTCCGGT
GAA-----------GCCCCACCACCCCCGTCCACCACCGCCCCAACCTTGAACCTTAAGATAGATAATGGGGTGATGACG
GCGAGCCCCTTCCTTCTCTCCGGCGAGGTCATTCCTTGTCCTTCCTTCACTCAAAATTGATTGATCCAAGACTGAAAAGT
CGGCTGACTGAAATGTACTCCCTCCGTCCCATAATATAAGATATTTTTTGACACTACACTAGAGTCAAAAAACGTCTTAC
ATTATGGGACAGATGAAGTAGCTAATATGTAATTCATCATGCAAGGGGAACAGTTCAGGCCTCCTTTGGTTTGGAGGAAT
TTTGTAGGTATTTCATAGGATATGATTTCTGTAGGAAAAATTCCTTTAGTGCCCTTTGATTTGTAGGAATAGAACCCTAT
TCATATGAAGGAATTCTTCCTATCCACCACATTTCATAAGAAAATGAATAATGAATCAAAAAACATCTCCTTTCCTATCC
TACTCATAGGATTTGAGAAACGTGTCATCTCATTTCCTATGACTTTCCTATTCCTATGGTTTTCCTACCCTATAAACCAC
CAAAAGGATGCCTCAAAGGAAAAAAAAAAAAGCAAGAAAACCACAAATGCGTCGAAGACTG--GAGACCCAACCAGCTTT
ATCCCCACGCATTAATAAACCCTGGCCTTAAATCCCCTTTCCCAACCGTCTTCCTCCCCAGCTAGGACGACGGTATCCAT
CCCGGAACGGAAAGCGCCAGA------TCCAGCTATAAAATCCGCCCCTCCCCACCC--ACAATCCCACAACAGCAAACC
AAATCCCCGAGACC-------------------------------AGTTGAA-------------TCTGAGTTTACTTTG
AGAGATT-GATCGATTCAATCAGTCGAGATGGCGCAGGCGATCGAGGCTCAGAGGGAGGGCGCGGAGGTGTACCACGGGG
CGGCGCTGTGCGCGGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCGCTGGCGGACATC
CAGGAGGTGGGCTACAACCGCGCCAGTGGCTTCGTCTGGCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGGAGGCAGGTCTCGTACGCCACCGAGGTGACGGCCTTCGTCGAGGACTGCAAGATGAAGCGCATGACCGGGGTCAAGA
GCAAGGAGCTTCTCATCTGGATCACCCTCTGCGACATGTACATCGACAAGGACGACCCCTCCAAG-ATCACCTTCAAGAC
GCCCACCGGA-CTCGGGAGGACCTTCCCCGTCTCCGCCTTCGGGAAAGAGGACTGCAAGGAG------GCCGCGGTGGCC
AAATAAGTGTGGACAGACGCG----ATACTCTACAAAGTTGGATGAAGATTGAAGAGGGCTCAAGTTCAAGTTCAATTGT
TAACTACCTTTGCCTGGGTTTATTA-----------------GCCCTATTGTATTTTTGGTCAACCTTTGACCCTTGATT
TAATTACCAAAAAATAAATTATATATCAAAAT----AATAATATAATTGGAAATCTCTTTTGAATATGAATCCTACAATA
TAATTTTGTGACTCGAATTTTTTATTTTTATTAGTCAAATCTACAGTCGAAATTTAACACAAAGTATGAAAGAGACATGT
AAACCCAGACGAAGGTGGTACACCTAC----TTTTTGCTTTGAAAATTACGAAGTAATTCATGGGTGTAACTCACTATAT
GATGTGTATATAAAAAATCCATAACAAAATATATGATCATGTGATATGTACAAAAAGACAAATATATCT---GTGCATTT
TATTTAAGTGAACACCAC-------GTTAATTTTTACAAAGTGCACATCACATATCATTGCTAACATACATGAATTTAGA
AAAAAAAAATCCTTAATGAACCTTCTATAGATACTAGCATGACCCATGAAAGTTTGCATACCTTTTGCGTCTTGAGGGTA
AGGTACATTTTCTATGGACGTGGCTAGTCAGTGCCCGTTGGTGCGATGGGGCGCCTATACCATAAACGGAAGGACGTCCT
AAAAAGTGCAGTTAGTCCCTCGTGTGCCTTTCAAAAAAAAAGAGAAGACCCTGCCCCCCCCCTCCCCAGAGTCCACGTGA
TTCTAGGACGTTACCAAATAAACCAGCTAATACCTTGTCACATGTGCATTAATTTGGGGTTTCAAATTTTTTAAAAAGCC
TTAAATTTCGATTCGAACGTCAAAATTCAAAACTGTTTCACCGCTGGGTTTCTCACGACGGGTTCTTCAAATCTAGATCC
CATATGAATAGGTTTCGTCAATCTTTTTTGGGTGGGCAACTTTGGGTGTAAGGGAGGCAACTTTAGTGGTATAGGGAAGC
AACTT
>chr3B_63
--------------------------------------------------------------CCGCCCCGCCCTCCCCTT
GACCTTCTCCCACCGCCAGGCTTGCCGCCGCCCCCGGCCATCCCTCTAGCCCCGACCCCATCTAGTTTTTTTTCTCCGGT
GAACCCACACCACCGCCCCACCATCGCCGTCCACCACTACCCCGCCCTGAACCC-TAAGATAGATAATGTGGTGATGACG
GCGAGCCCCTTCCTTCTCTCTGGCAAGGCCATTCCTTCTCCTTCTTTCAATCAAAATCGACTGACCCAAAACTGAAAAGT
CGGCTGACTGAAATGTAGG-------------------------------------------------------------
----------------------TAATATGTAATTCATCATGCAAGGGGAACAGTTCA-----------------------
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---------------AAGAAAAAAAAAGAGAGCAAGAAAACCACAAATGCGTCGAAGACCG--GAGACCCAACCAGTTTC
CTCCCCACGCATTAATAAACCCTGGCCTTAAATCCCCTTTCCCAACCGTCTTCCTCCCCAGCTAGGACGACGGTATCCAT
CCCGGAACGGAAAGCGCCAGA------TCCAGCTATAAAATCCGCCCCTCCCCACCC--ACAATTCCACAACAGCAAACC
AAATCCCCCAAGACCGAAAAAGGCACCAGCAACTCCAGCGCGTAGAGTTGAA-------------TCTGAGCTTACTTTG
AGAGATTTGATTGATTCAATCAGTCGAGATGGCGCAGGCGATCGAGGCTCAGAGGGAGGGTGCGGAGGTGTACCACGGCG
CGGTGCTGTGCGCGGAGAAGGCGTTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCGCTGGCGGACATC
GAGGAGGTCGGCTACAACCGCGCCACCGGCTTCGTCTGGCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGGAGGCAGGTCTCGTACGCCACTGAGGTGACGGCCTTCGTCGAGGACCGCAAGATGAAGCGCATGACCGGGGTCAAGA
GCAAGGAGCTCCTCATCTGGATCACCCTCTGCGACATGTACATCGACAAGGGCGACCCCTCCAAG-ATCACCTTCAAGAC
CCCCACCGGGGCTGGGGAGGACCTTCCCTGTCTCCGCCTTCGGGAAAGAGGACTGCAAGGAG------GCCGCGGTGGCC
AAATAGGTGTGGACAGACGCG----ATACTCTACAAAGTTGGATGAAGACTGAAGAGTGCTCAAGTTCAAGTTCAATTGT
TAACTACCTTTGTCTGGGTTTATTAGCCCTATTGTATTTTTGGCCCTATTGTATTTTTGGTCTACCTTTGACCCTTGATT
TAATTACCAAAAAATAAATTATATATCAAAAT----AATAGTATAATTGGAAATCTCTTTTGAATATGAATCCTACAATA
TAATTTGGTGATT-TAAAACTTTTATTTTGTTAGTCAAATCTACAGCCGAAATTTAACACAAAGTACGAAAGAGACGTGT
AAACCAGA-CGAAGGTAGTACGACAACTACATTTTTGCTTTGAAAATTACGAAGTAATTCATGGGTGTAACTCACTATAT
GATGTGCATATAAAAAAATCATAACAAAATATATGATCATGTGATATGTACAAAAAGACAAATTTATATCTCGTGCATTT
TATTTAAGTGAACACCACATTTGAAGTTAATTTTTACAAAGTGCACATCACATATCATTGCTAACATACATGAATTTAGA
-----AAAATCCTTAATGAACCTTCTATTGA-------------------------------------------------
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>chr3D_755
TGCGTCAGAGAG--------------------------------------------------------------------
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----------------------------------------------------------CCG--GTGACCCAACCGTCTTC
CTCCCCACGCATTAATAAGCCCGCGCCTTAAATCCCCGCTCCCAACCGTCTTCCTCCCCAGCTCTGACGACCGTATCCAT
CCCGGAACGGGAAACACCAACCTGCTTTCCACCTATAAAATCCGCCCTTCCCCACCCCCCCAATCCCACAACAGCAAACC
AAATCCCCCAAGACCAAAAAAGGCCCCAGCAACCCAAGCGCGTCGACCCCATC--------------------TACTTTC
AGAGATTTTATT---------AGTCGAGATGGCACAGGCGATCGAGGCTCAGAGGGAGGGCGCAGAGGTGTACCACGGCG
CGGCGCTGTGCGCGGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCGCTGGCGGACATC
CAGGAGGTGGGCTACAACCGCGCCACCGGCTTCGTGTGGCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGGCGGCAGGTCTCGTACGCCACCGAGGTGACGGCCTTCGTCGAGGACCGCAAGATGAAGCGCATGACCGGGGTCAAGA
GCAAGGAGCTCCTCATCTGGATCACCCTCTGCGACATGTACATCGAGAAGGACGATCCCTCCAAG-ATCACCTTCAAGAC
GCCCACC-GGGCTGGGGAGGACCTTCCCCGTCTCCGCCTTCGAGAAGCAGGAC---------------------------
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>chr3B_755
TGCGTCAGAGAG--------------------------------------------------------------------
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----------------------------------------------------------TCGGAGAGACCCAACCGTCTTC
CTCCCCACGCATTAATAAGCCCTCGCCTTAAATCCCCGCTCCCAACCGTCTTCCTCCCCAGCTCTGACGACGGTATCCAT
CCCGGAACGGGAAACACCAACCTGCTTTCCACCTATAAAATCCGCCCTTCCCCA-CCCCCCAATCCCACAACAGCAAACC
AAATCCCCCAAGACCAAAAAAGGCCCCAGCAACCCAAGCGCGTCGACCCCATCCACAGTTGAATCTCTGAGTTTACTTTC
AGAGAAGATTTT---------AGTCGAGATGGCGCAGGCGATCGAGGCTCAGAGCGAGGGCGCGGAGGTGTACCACGGCG
CGGCGCTGTGCGCGGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCGCTGGCAGACATC
GAGGAGGTGGGCTACAACCGCGCCACCGGCTTCGTCTGGCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGGCGGCAGGTCTCGTACGGCACCGAGGTGACGGCCTTCGTCGAGGACCGCAAGATGAAGCGCATGACCGGGGTCAAGA
GCAAGGAGCTCCTCATCTGGATCACCCTCTGCGACATGTACATCGAGAAGGACGATCCCTCCAAG-ATCACCTTCAAGAC
GCCCACA-GGGCTGGGGAGGACCTTCCCCGTCTCCGCCTTCGAGAAGCAGGACGACGGCAAGGCCAAGGCCGCGG-----
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>chr3B_892
CTATA---------------------------------------------------------------------------
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--------------------------------------AATCCGCCCCTCCCCACCT--CCAATCCCAGTATCCCACCAC
ATCAATCGAAAAGCACAG-----------------------GTTGAGTTGAG-------------CCAGACTTTTCTTCG
AGAGATTAAATTTAATCCATCAAGATGG-CGTCGCAGGTGATCGAGGTGAACAGGGAGGGGGCGGAGGTGTACCACGGCG
CGGCGCTGTGCGCCGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCACTGGCGGACATC
GAGGAGGTCGGCTACAACCGCTCCACGGGCTTCGTGTGGCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGCAGGCTGGTCTCGTACGCCACCGAGGTGATGGCCTTCGTCGAGGATCGCAAGATGAAGCGCATCACAGGGGTCAAGA
GCAAGGAGCTCCTCATCTGGGTCACCGTCTGCGACATGTACATCGACAAGAACGACCACTCAAAG-ATCACGTTCAAGAC
GCCCACA-GGACTGGGAAGGACCTTCCCCATCTCCGCCTCCGGAAAGGAGGAC---------------------------
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>chr3B_952
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---------------------------------------------AGTTGAG-------------CCAGAGTTTGCTTCG
AGAGATTAAATTTAACCCATCGAGATGG-TGTCGCAGGTGATCGAGGTGAACAGGGAGGGCGCGGAGGTGTACCATGGTG
CGGCGTTGTGCGCAGAGAAGGCGACGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCGCTGGCGGACATC
GAGGAGGTCGGCTACAACTGCTCCACGAGCTTCGTGTGCCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGGAGGCTGGTCTCGTACGCCACCGAGGTGACGGCCTTCTTCGAGGACCGCAAGATGAAGCGGATCACGGGGGTCAAGA
GCAAGGAGCTCCTCATCTGGGTCACCGTCTGCGACATGTACATCGACAAGAACGACCGCTCAAAGGATCAGTTTCAAGAC
GCCCACC-GGACTGGGAAGGACCTTCCCTGTCTCCGCCTACGGAAAGGAGGACGACAACAAG------CACGACCTGGCC
AAATAAG-------------------------------------------------------------------------
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>chr3A_952
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---------------------------------------------AGTTGAA-------------TCTGAGTTTACTTTG
AGAGATTTGATTGGTTCAATCAGTCGAGATGGCGCAGGCGATCGAGGCTCAGAGGGAAGGCGCGGAGGTGTATCACGGCG
CGGCGCTGTGCGCGGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCTGCCGCTGGCGGACATC
GAGGAGGTGGGCTACAACCGCGCCACCGGCTTCGTGTGGCTGCGCCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGAT
CGGGCGGCAGGTCTCGTACGGCACCGAGGTGACGGCCTTCGTCGAGGACCGCAAGATGAAGCGCATGACCGGGGTCAAGA
GCAAGGAGCTCCTCATCTGGATCACCCTCTGCGACATGTACATCGACAAGGATGACCCCTCCAAG-ATCACCTTCAAGAC
GGCCACC-GGGCTCGGCAGGACCTTCCCCGTCTCCGCCTTCGGGAAAGAGGACTGCAAGGAG------GCCGCGGTGGGC
AAGTAAGTGAGGACGGACGGCATATATACTCTACAAAGTTGGATGAAGATTGAAGAGTG------TTCAAGTTCAATTTA
TAAGTACCTCGGTCTGGGTTTATTA-----------------GCCCTATTGTATTTTGGGTCAACATTTGACCATTGATT
TACTTACCAAAAAATAAGTTATACTGTTTATCATAAAATAGTATCATCGGAAGCTTCTTTCGAATAAGAATTCAACAATA
TAATTTTTGTGACATATAACTTGTATTTTGTTTGTCAATTCTATAGTCTAAATAAGACACAAAATACAAGAGAGACCAAC
AAACCCGGACGAAG------------------------------------------------------------------
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>SNPs
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S----------
-----S--------------S-----------S-------------------S-S--------------S----------
-----------------------S-S-----------SS----SS---SS-S--S--------------S----------
--------------------S---S---S--------S------S----S-------S--S---S----S----------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-----------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---S--------S-S-----------------------------S-------------------S
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-S-S-------------------------------------------------------------------
-----------S------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-------------------------SS-----------------------------------------------------
-------------------------------------------------S------------------------------
----------S---------------------------------------------------------------------
---------S----------------------------------------------------------------------
---------------------------------------------------------S----------------------
------------S-------------------------------------------------------------------
----------------------------------------S---------------------------------------
-----------S-SS--SSS---SS----S------------------------------------S---------S---
------S---------S----SS-S-------------------------------------------------------
------S----------SS--------------------------------------------S---S------------
--------------------------------------------------------------------------------
SSSSS-----------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_351
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-----------AATGTACTCCCTCCGTCCCA-------------------------------------------------
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>reverse_2447
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----------------------------------------------GGTTTCTCACGACGGGTTCT--------------
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