>input_sequence_79948
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-----------------------ATGGTGAGGTTGGGGCCTCTGGCCGCGCAGCACGCGGGAGGGTTCGCCGACGACCTG
AGGCTGGAGAGCCCCGCGGTGCTCGTGGCCTTCGCGGTCGTGGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTG
CGCCAAGGGAGCCAAGAAGCCGCGCCGGCAGGACAACAACAACAACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGC
CTCCCGCCGGGGCGTACGGCTACCCGGCGCAGCAGCCGCCCCCGGGCTACGCGTACCCGC---CGCCCGTCGACGCTGGG
AGGAAGCAGGGAGGGCGCATGGGGGCCGGCGCGGGGCTCGCCCTCGGAGCCGGCGCCGGCCTGGCCACCGGCGTCATCGT
CGGCTCGGCGCTCAGCTCCGGGTGCGGAGGCGGAGGTGGGTGCGGC------------GGCGGGTGCGGTGGCGGCTGCG
GCGGTTGA------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G504700
ATCCAAGCAAGCAAGTAGGTGTTCCGGTTCAATGTTTACACAAATTTAGGCACTGGTGAACGGAAGTGCGGCATGTGGGC
-----ACTCGTGCCAAACGCCAAAAATATACAACTTGCCGTGC---------CTCGCTTTTGGCAAGCCACCATGGTAGA
CGTTAAGTTAATT-AAG-TTTTTCACGTCACCTTTCATGGGCTTAAGCGCCAATCAGATCTTGCTCTGCACGCCAAATAT
ATCTGCCATCACCATCCATCCCAACTTTCTTTTT-ATCAACAAACACCACA----------ATCCGCAGAAATGATGGTG
GGAAAAGGCGAAAACCACCGGCTCCCA----GCATGCATGCATGGGCCAATGTA---TCCTACGGCGTTGGCGGAGAAAA
ATAGGTCGACGTGGCAGCATATGCCGCGGCAAGTGTAAATTAATCCAAACTGCCTCTCGTCTCCCGCACGGATAATTGGA
TATGCTTTTCTTCTTGGAACCAACATACGGCTGGGACGGAGTTGGCGTTTTTAACTGGCTCTATCCCAAACCCAAGATAA
CCGAAATATATAAACCGC--TACTAGATAACAAATCGATCAAAATCATGGGATTTCTTCCGTGG----CAAACAAACAAA
ATAAAGTATAGGGTTTCGCTTGCCTCCGAAGCAACCGGACGTGTACAAATTACCCACAAATGCAGGGGAGGGTTCGAGCG
AATTCC-CTCTGAATTTTCGCCCTTGTCAATTGCCTGCGAAAGCGAGAGATCCCGGAGGAAATTCCTTGGCGCCCCCCAA
AGTCTCCGGTCTT----GGGAGGTTGCACGCGTAGTTTTGCTAGATATATATTCCACC--CGCCTCCCTGATCGATCGCT
CTCACGCCAATAGTTTAGTCGAACCGAACACCGAAGACTTTGACCCCGCGATCGGCGATCCCAACTGCCGCACCAGGTTT
AT------TATCTCCCCGCCTCGCAAGGCGCAAGCTCTTCCCACAGCTTTCCT-CCTAGCCAGCTCCGCCCTCTCCTTCC
TCCAGCCGAA---------AGCAATGGTGAGGTTGGGGCCTCTGGCCGCGCAGCACGCGGGAGGGTTCGCCGACGACCTG
AGGCTGGAGAGCCCCGCGGTGCTCGTGGCCTTCGCGGTCGTGGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTG
CGCCAAGGGAGCCAAGAAGCCGCGCCGGCAGGACAACAACAACAACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGC
CTCCCGCCGGGGCGTACGGCTACCCGGCGCAGCAGCCGCCCCCGGGCTACGCGTACCCGC---CGCCCGTCGACGCTGGG
AGGAAGCAGGGAGGGCGCATGGGGGCCGGCGCGGGGCTCGCCCTCGGAGCCGGCGCCGGCCTGGCCACCGGCGTCATCGT
CGGCTCGGCGCTCAGCTCCGGGTGCGGAGGCGGAGGTGGGTGCGGC------------GGCGGGTGCGGTGGCGGCTGCG
GCGGTTGACTTGATCGTACCACGAAGTGCTTATCGGCTTGCCTTGGTGTG----CGTAGTGGTTAGGCAGTTGGG-CTTT
GATAATTGTATAGATACTGCTACTACAATACTG-------TCGCGTGTGATGATGGGCATGACTCTATGTCCACTTGTTT
AATTATTACTACGTGATGAGTATATTGTGAAAGCAGCATTT--GATTTGGGGCGTGCGTGCATGCCGTTCTTTTCGTTCC
ATGTAACAAATGATGATCAAGAATTCAAGATAGGCACTGCTACGCGTCGGCCGGCGGATCTTTTTAAAAGATCCGTCGCC
TCGTCAGCCAGCGGATCTGATGGATTGGGTGGCCGATCATCACTTTCTACCATTGCAACACATATCATGTTACGAAACAG
AAAACCGCAATATAGGTCAAGTTGCGGATTATTTTTGCAACAGAGCCCGTGTTATAGGTTTTTTTTTGCAACAAATGTCT
TGTTACAGTTTTTTTGGCAACAAGGACCTTGTTGCCGAAATTCACTGCGCCGGACACGGAAACTCACGATGGACGCAGAC
ACCGAGGAGAAACAGCCGGTGCCGGACAGCGAGCAGTAACACGCGGCGCCGGACAGCGAGCAGTAACACGCGGCGCCGGA
CAGCGAGCAGCAACACGCCGGCGTCGGATGCGGAAACTCATGGTGGATGCGGACGCCGGTGCTCCCCAGGATGGCGGATG
CAGGTTGAGCTCGGGCGCACTATGATGGTCGGCGTTCATGGTGGAGGTGGGCGGCAGCGGCCGTGCCCACGCCTGCGACC
TCGTCAGAGTTCTGCCTGAGCTCAAGCTTGATGGGGAGCTCAGGAGGAACACGGGTGTTGGCTGCTCTCATGGGATCTCA
GATCTTGCAACACACCGGTTGTTGCGGGTGGGGGAGATTGCAACAACCACGCAGTTGCAAAAAACTAATCTAGGTATTTC
TGATCCAACGGTCACGAAGGTGGCGGACACACGCGTGGTTATCCGTCGGATGATTCCAATCA
>chr2A_1
ATCCAAGCTAGCAAGTAGGTGTTGCGGTTCAATGTTTACACGAATTTAGGCACTGGTGGACGGAAGTGTGGCATGTGGGC
TGGGCACTCGTGCCAAACGCCGAAAATATGCAA---------C---------CTCGCTTTTGGCAAGCCACCATGGAAGA
CGC-AAGTTAATTAAAG-TTTTTCACGTCACCTTTCATGAGCGTAAGCGCCAATCAGATCTTGCTCTGCACGCCAAATAT
ATCTGCCATCACCATCCATCCCAACTTTCTTTTTGATCAACAAACACCACAACCCTCTCGAATCCGCGGAAATGATGGTG
GGAAAAGGC----------------CAGCATGCATGCATGCATGGGCCAATGTA--ATCCTACGGCGTTGGCGGAGAAAA
ATAGGTCGACGTGGCAGCATATGCCGTGGCAAGTGTAAATTAATCCAAACTGCCCCTCGTCTCCCGCACGGATAATTGGA
TATGCTTTTCTT---GTAATCAACATACGGCTGAGACGGAGTTGGCGTTTCTAACTGGCTCTATCCCAAGATA-------
---AAATATATAAACCGC--TAGTAGATAACAAATCGATCAATATTATGGGATTTATTCCGCGG----CATGGAT-----
---AATTATAGGGTTTCGCTTGCCACCGAAGCAACCGGACGTGCACAAATTACCCACAAATGCAGGGGAGGGTTCGAGCG
AATTCCACTCTGAATTTTCGCCCTTGTCAATTGCCTGCGAAAGCCAGAGATCCCGGAGGAAATTCCTTGGTGCCCCCCAA
AGTCTCCGGTCTTGGGAGGGAGGTTGCACGCGTAGTTTTGCTAGATATATATTCCACC--CGCCTCCCTAATCGATCGCT
CTCACGCCAATAGTTTAGTCGAACCGAACACCGAAGACTTTGACCCCGCGATCGGCGAT-CCAACTGCCTCACCAGGTTT
ATTATCTCTATCTCCCCGCCCCGCAAGGCGCAAGCTCTTCCCACAGCTTTCCT-CCTAGCCAGCTCCGCCCTCTCCTTCC
TCCTCCTCCAGCCGAAAGCAGCAATGGTGAGGCTGGGGCCTCTCGCCGCGCAGCACTCGGGAGCGTTCGCCCGCGACCTG
GGGCTGGGGAGCCCCGCGGCGCTCGTGGCCTTCGCGGTCGTCGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTG
CGCCAAGGGGGCCAAGAAGCCGCGCCGGCAGGACAACAACAA---CGTGTACTACTACGGCCAGGGGTACCCACCGCCGC
CCCCCGCGGGCGCGTACGGCTACCCGGCGCAGCAGCCTCCCCCCGGCTACGCGTACCCGCCGCCGCCCGTCGACGCCGGG
AGGAAGCAGGGAGGGCGCATGGGAGCCGGCGCGGGTCTCGCCCTCGGCGCAGGCGCCGGCCTGGCCACCGGCGTCATCGT
CGGCTCGGCGCTCAGCTCCGGCTGCGGAGGCGGC------TGCGGC------------GGCGGATGCGGTGGCGGCTGCG
GCGGTTGACTTGATCGTACCACGACGTGCTTATCGGCTTGCGTTGGTGTG----CGTAGTGGTTAGGCAGTTGGGGCTTT
GATAATTGTATAGATACTGCTACTACTATACCG-------TCGCGTGTGATGATCGGCATCCCTCTATGTCCACTTGTTT
AATTATTACTACGTGATGAGCATATTGTGAAAGCAGCATGT--GATTTGGGGCGTGCATGCATGCCGTTCTTTTCCATGT
A-GTAACAAATGATGATCAAGAATTCAATATAG-----------------------------------------------
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>chr2B_28
---------------------------TTCAAATGTTACATGAATTTAGGCACTGGTGGACGGAAGGGTGGCATG-----
TGGGCACTCGTGCCAAACGCCAAAAATATGCAA---------CTTGCCGTGCCTCGCTTTTGGGAAGCCACCATGGAAGA
CGC-AAGTTAATT-AAGTTTTTTCACGTCACCTTTCATGAGCTTAAGCGCCAATCAGATCTTGCTCTGCACGTCAATTAT
ATCTGCCATCACCATCCATCTAAACTTTCTTTTTGAGCAACAAAGACCACAACC------AATCCGCAGAAATTATGGTG
GGAAAAGGCGAAAACCACCGGTTCCCAGCATGCATGCGTGCATGGGCCAATGCCGTATCCTACGGGGTTGGCGGAGAAAA
ATAGGCTGCGTG----------GCCGCGGCAAGTGTAAATTAATCCAAACTGCCTCTCGTCTCCCGCACGGATAATTGGA
TATGCTTT-CTT---GTGATCAACATACGGCTGAGACGGAGTTGGCGTTTTTAACTGGCTCTATCCCAATCCCAAGATAA
CCGAAATATATAAACCGCTCTACTAGATAACAAATCGATCCAAATCATGGGATTTCTTCCACGGCAAACAAACAAACAAA
ATAAATCATGGGGCTTCCCTTGCCTCCGAAGCAACCGGACGTGCATAAATTACCCACAAATGCAGGGGAGGATTCGTGGG
AATTCCCCTCTGAATTTTCGTCCTTGTGAATAGCCTACGAAAGCGAGAGATCCCGGAGGAAATTCCTTGGTGCCCCCCAA
AGTCGCCGGTCTT----GGGAGGTTGCACGCGTAGTTTTGCTAGATATATATTCCACCCGCGCCTCCCTGATCGATTGCT
CTCGCACCAATAGTTTAGCCGAACCGAACACCGAAGACTTTGACCCCGCGATCGGCGAT-CCAACTGCCGCACCAGGTTT
ATTATT------TCCCCGCCCCGCAAGGCGCAAGCTCTTCCCACAACTTTCCTCCCTAGCCAGCTCCGCCCTCTCCTTCC
---TCCTCCAGCCGAAAGCAGCAATGGTGAGGCTGGGGCCTCTGGCCGCGCAGCACGCAGGAGCGTTCGCCCACGACCTG
GGGCTGGGGAGCCCCGCGGCGCTCGTGGCCTTCGCTGTCGTGGCGACGGTGGCGGTGGCCGCCGTGGCCGCCTTCGGCTG
CGCCAAGGGGGCCAAGAAGCCGCACCGGCAGGACAACAACAA---CGTCTACTACTACGGCCAGGGTTACCCGCCGCCGC
CTCCCGCCGGGGCGTACGGATACCCGGCGCAGCAGCCGCCCCCAGGCTACGCGTACCCGCCGCCGCCCGTCGACGCCGGG
AGGAAGCAGGGAGGGCGCATGGGTGCCGGCGCGGGGCTGGCCCTCGGCGCAGGCGCCGGCCTGGCCACCGGCGTCATCGT
CGGCTCGGCGCTCAGCTCCGGGTGCGGAGGAGGCGGTGGGTGCGGC------------GGCGGTTGCGGTGGCGGCTGCG
GCGGTTGACTTGATCGTACCACGACGTGCTTATCGGCTTGCCTTGGTGTG----CGTAGTGGTTAGACAGTTGGGGCTTT
GATAATTGT--AGATACTGCTACTACTATACCG-------TCGCGTGTGATGATGGGCGTGACTCTATGTCCACTTGTTT
AATTATTACTACGTGATGAGTATATTGTGAAAGCAGCA--T--GATTTGGGGCGTGCATGCATGCCGTTCTTTTCCATGT
A----ACAAATGATGATCAAGAATTCAAGATAGACAC-------------------------------------------
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>chr2A_973
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------------------------------------------------------------------CGTCCTCTTCTTCC
TCCAGACGAAGCAATC-------ATGGTGAGGCTGGGGCCTCTGGCCGCGCAGCACGCGGGAGCGTTCGCCCGCGACCTG
GGGCTGGGAAGCCCCGCGGCGCTCGTGGCCTTCGCGGTCGTCGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTG
CGCCAAGGGGGCCAAGAAGCCGCGCCGGCAAGACAAGAACAA---CGTCTACTACTACGGCCAGGGGTATCCGCCGCCGC
CACCCGCGGGCGCGTACGGTTACCCGGCGCAGCAGCCGGCCCCGGGCTACGCGTACCCACCGCCGCCCGCCGACGCTGGG
AGGAAGCAGGG---GCGCATGGGCGGTGGCGCGGGGCTCGCCCTCGGTGCTGGCGCTGGCCTGGCCACCGGCGTCATCGT
CGGCTCGGCGCTCAGCTCCGGGTGCGGAGGAGGCGGCGGGTGCGGTGGTGGCTGCGGTGGCGGATGCGGTGGTGGCTGCG
GCGGTTGACCTGGTCGTA------CGTGTTTCATGGCTTGCGTTGGTGTGCGTACGTAGTGGTTAGACAGTTGGGGCTTT
GATAATTGT--AGATATACTACTTACTACACTATACAGTATCGCGTGTGACGATCGGCATATCTCTACGCCCGCTTGTTC
G---ATTACTACGTGATGAGTATATTGTGAAAGCAGCA--TATGATTTGGGGCGTGCATGGATGCCGTTCTTTTCCATGT
A----ACAACTGATGATC--------------------------------------------------------------
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>SNPs
--------S--------------S-----------------S----------------S---------S-----------
-----------------------------S---SSSSSSSSS----------------------------------S---
--SS-----------------------------------S----------------------------------------
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---------------------S----------------------------------------------------------
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------------SSS-S--S-------------S-----------------------------------S----------
-------------------------------------------------------------S------------------
-----S-------------------------------------S------------------------------------
----------------------------------------------------------------------S---------
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-----------------------------------------------------------S--------------------
--------------------S-----------------------------------------------------------
--------------------------------S------------------------------S-------S--------
S------S-----------S------------------------------------------------------------
---------S--------------------------------SSS-----------------------------------
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-----------------------S-----------------------S--S-----------------------------
---------------------------------S-----------------------------S----------------
------------------------S-------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------------------S-----------------S-----------------SS-SS
-S-------------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_163
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---------------------------------------------------------------CAAGCCACCATGGTAGA
CGT-----------------------------------------------------------------------------
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>reverse_2075
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--------------------------------------------------------------------------GCAGAC
ACCGAGGAGAAACA------------------------------------------------------------------
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