>input_sequence_79947
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-------ATGATCGCTATTGCCGGCGCGTTGGTCGCCGGTGTGGCAGCCGCGGCCACGGCGGGGATGCTTGCGTTGGCGT
CGTCGCGCGGCGACCGGGGCGAGGATGCCACGAGCGCCGTGGCGGCGCCG------GCGGCGTCCCAGGAGTGCGCGGTG
TGCCTGTCGGAGCTGGTCGGAGCGGCGGGATACTCCGGCGACTCCGAGCCATCGTCGGCGCTGGTACGCGTGCTGTCGGG
CTGTGGGCACGGGTTCCACGACGAGTGCATCGGCAGGTGGCTGCTGCTGCGCCCCGAGTGCCCGCTCTGCCGCTGCCCCG
TGGTCACCGCGGACAGTCGGCTAGCCAGGAAG------------GCCGTGTCGCTGGCGGAGGCCGCGCCTGCCTTGTCG
CGGCCGGCTAGGATCGCGTGCGGCTTCGGCGACGGGAGGGTGGTGTGGACGCGTAGCCCACCCGTGGCATTGTAA-----
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>chr2D_1_TraesCS2D01G351200
GCAGAACATTGCTAATCCATCACCTGTGCCATCACTATTCACAGAACTAAAACCTTTTAAACCCAACCTCCATCGAAGTT
TCTCCATCTTCTCTCTAGCTTGATGTGTCTTACAGAGGAAGACGAGTTTGGGGCAATTGGTTTTTGAGAGGGCCA-----
---ACACCTCACGAACTGTTCCTCTG-CCCCGGCAGTTCCAAAATAGGAGATCCATTGATCCGGGCAGCGCTCCTCCTCG
GAGCCCGCCAAATTAGCTTGATCATCCACATTCAATTTTCGTA-------------------------------------
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------------------------------------------TAGGTGTTTGTACCATATTTATTTCCATTCATATTTCT
TTCAAGTTTTTTAAATTCTTTTTATCTTCCAAAAAATGAAAAAGAAATGTAGTAGTAACACTCAGTTTCATCCTTTTTTT
TATCCCTACCCCTAATCACCTAGCCACTCTCGTAATTACTCCCTCTGTCCGGAAATATTTGTCCGAGGAATGGATATATT
TTAGTTCTAGATACATCCATTTGTATTCATTTCTATGACAAGTATTTCCGGACGGAGGGAGTAGCTTATTTGGAGTAGTG
AAGGGTATGCACAACTATATTTAAATATATATCATAAAACATTAAGTGTGCACGTATAATTGAGACCTCATCATTGGC--
------------------------------AAAAAAAAGATTTTTTTATATAAAAAATGCAAGAAGAAGAGATTAAGATC
TGATCATGCAAAGCATGTATGCAACGAACGTCTTCAACGACTGGTTTGGCTCGCTTAATGCGC-ATATATCTCTTTCTTT
AAGCATCGGAGAAAGAAGGGCAGGAGGTCGCTTTCTCGCATGTCGGGGGCTTGCTTTCGGTTG-----TGTGATGTGCTC
CTCCGCACCCGCGCGTTGATGCATCCACGTCGCGCCTCCTCTCGTCGACCTCTTTGCCTATATACCACACGCACACCAGC
ACCGGCCGATGCACTCGCCGACCTCTCCTCTCCATCATACCACGCACTGACACCGATCGACAGACGCCGAGGCGCAAA-A
GGATACCATGATCGCTATTGCCGGCGCGTTGGTCGCCGGTGTGGCAGCCGCGGCCACGGCGGGGATGCTTGCGTTGGCGT
CGTCGCGCGGCGACCGGGGCGAGGATGCCACGAGCGCCGTGGCGGCGCCG------GCGGCGTCCCAGGAGTGCGCGGTG
TGCCTGTCGGAGCTGGTCGGAGCGGCGGGATACTCCGGCGACTCCGAGCCATCGTCGGCGCTGGTACGCGTGCTGTCGGG
CTGTGGGCACGGGTTCCACGACGAGTGCATCGGCAGGTGGCTGCTGCTGCGCCCCGAGTGCCCGCTCTGCCGCTGCCCCG
TGGTCACCGCGGACAGTCGGCTAGCCAGGAAG------------GCCGTGTCGCTGGCGGAGGCCGCGCCTGCCTTGTCG
CGGCCGGCTAGGATCGCGTGCGGCTTCGGCGACGGGAGGGTGGTGTGGACGCGTAGCCCACCCGTGGCATTGTAAAGGGC
CGTGTGAGGAAGGTCATCTGATTACTCGAGGATTAGTGAAGCCAAAGTGGAAGGAGTGCTTCAAGATTTCACATTATTCT
TGGTTGATTGTGTGGAATCGGATTTATATGGGTTTACCATCATATCATCATTGTTTTGTCCTCGTTTCATGTGCAAAATG
CTTGCGGACC-----------TTTATTCCATAGCTTGTCACTTTATCACACAGGTGAACCTTACGTTTTTTTATTATGGT
TGAGATATTTTGTACTTCCGATAAATTGATGATAGATCCGGGTATTTTTCGAAGAAAAAGAGATTCGTAGGCTATGGGCA
CACATGCCAGCTTCTTCAGTTCTTTTTTTAGAAAACGCCCTTCGAGGCTCTTAATTTATTAGCAGACGAGTTTATATCTG
GTTGAACATGCCTCAAACAAATAAACACATATTACATCATACATAATGAAGGAAGGAGCAAGACCAAGAGCCTCCCTAGC
CGACACATGTGCTGCTACATTGGCACTTATTCTCACAAAATGAAGCTTAAACCCCCGCAAGGGCGACATAAGTGAAGTCA
CCTCTCAAAATATATGGTACCCCATCGATCTATCATTCTCGAACTGCCACATCGACACCACTTCCTAGCAGTCCGTCTTG
ATCACCATATCATGGAACCCATTTTCAACGGAGAAAAGCATTGCATCACGGCATGCGAGAAGCTCGATAACGAACGGGTC
AGAGATTGCTTCATAACTAATGCATTTAGTTTGAACGAAGTTTCCTCTATGATCTCTTGCAATCAAACCCAGTGGCGGAG
CTAGCCAACTCATGGTGACGGCGTTCTAAGAACGGGGTCCCCGAACTTGACTGCCTACGGCCCACGGCGTGGCTCTGTGA
GCGGGTCCGTACGGCCCATCTTCATTAACAAGCACTCAAGACCCTCGCGAGGGGCCAAGCCTCGCGAGGCGGATGGCGCA
AGACCCCTTCGGGAGCGGCCTCACTAGGTTGGCTCACGAGGGGCGG
>chr2A_1
GCACAACAGTGCTAATCCACCACCTCTGACATCACTATTCAAAGCACTAAAACCTTTTAAACCCAACCTCCATCGAAGTT
TCTCCATCGTATCTCTAGCTTGATGTGTCTTACAGAGGAAGACGAGCTTGAGGCAATTGGTTTTTGAAAGGGTCGACACC
TTGACACCTCGCGAATTGTCCCTCTC-CCTCGACAGTCCCAAAATAGGAGATCCATTGATCCTGGCGGCGCCCCTCCTCG
GAGCCCGCCAAATTAGCTTGATCATCCACATTCGATTTTTGTATACTCCCTCCTTCCATCTATATAGGGCCTAATGCGTT
TTTTGAAGCTAACTTTGACCAAATGTTAGAGCAATAATATATGACATGCAACTTACACAAAGCACATCATCAAATTCGTA
TGTGAAAGGAGCTTTCAATGATATAATTTTCACATTATGCATGTCATGTAGTATTAATTTTATCAATAGTCAATGACGAT
CTTGAAAAACGCATTAGGCCCTATATAGATGGAAGGAGGGAGTAGGTGTTTGCATCGTATTTATTTCCGTCCATATTTCT
TTCAAGTTTTCTAAATTCTTTTTATCGTCAAAAAAATGAAAATGAAATGTAGTAGTAACACTCAGTTTCATCCTTTTTTT
TATCCCTACCCCTAATCACCGAGCCACTCTCGTAATT-------------------------------------------
--------------------------------------------------------------AGCTTATTTGGAGTAGTG
AAGGGTATGCACAACTATATTTAAATACATATCATA-AAAAATAAGTGTGCACGTATAATTGAGACCTCATCATTGGCTC
ATCGCAAAAAAAAGACCTCATCATTTGCAGAAAAAAAGTGTTCTTTT----AATC----CAAGAAGAAGAGATTAAGATC
TGATCATGCAAAGCATGTATGCAACGAACGTCTTCAACGACTGGTTTGGCTCGCTTAATGGCAAATATATCCCTTTCTTT
AAGCATTGGAGAAAGAAGGGCAGGAGGTCGCTTTCTCGCATGTCGGGGGCTTGCTTTCGGTTGCCTGATGTGATGTGCTC
CTCCGCACCCGCGCGTTGATGCATCCACGTCGCGCCTCCTCTCGTCGACCTCTTTGCCTATATACCACACAGAT--CATC
ACCGGCCGATGCACTCGCCGACCTCTCCTCTCCATCATACCACGCACTAACACCGGTCGACACACGCCGAGGCGCAAA-A
GGGTACCATGATCGCTATGGCCGGCGCGGTGGTCGCTGGTGTGGCAGCCGCGGCCACGGCGGGGATTCTTGCCATGGCGT
CGTCGCGCGGCGACCAGCCTGAGGATGCCACGCGCGCCGTGGCGGCGGCGGCGGCGGCGGCGTCCCAGGAGTGCGCGGTG
TGCCTGTCGGAGCTGGCCGGAGCGGCGGGATGCTCCGGCGACTCCGAGCCATCGGCGGTGCTGGTGCGCGTGCTGCCGGG
CTGTGGCCACGGGTTCCACGACGAGTGCATCGGCAGGTGGCTGCTGCTGCGCCCAGAGTGCCCGCTCTGCCGCTGTCCCG
TGGTCACCGCGGACAGTCGGCTAGCCAGGAAG------------GCCGTGCCGCTGGCGGAGGCCGCGCCTGCCTTGTCG
CGGCCGGCTAGGATCGCGTGCGGCTTCGGCGACGGGAGGGTCGTGTGGACGCGTAGCCCCCCCGTGGCATTGT-------
-----GAGGAAGGTTATCTGGTTACTCGAGGATTAGTGAAACCAAAGTGGAAGGAGCGCTTCAAGATTCGCATC-ACCTT
TGGCTGAGTGTGTGGAATCGGGTTTATATGTGTTTA------TATCATCATTGTTTTGTCCTTGTTTCATGTGCAAAATG
CTTGCGGACA------------TTATCTGATAGTTTGTCACTTTATCACACGGGTGAATCGTAGGCTTTTTT--------
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>chr2B_4
---GAACAATGCTAATCCACCACCTCTGCCATCACTATTCACAACACTAAAACCTTTTAAACCCAACCTTCATCAAAGTT
TCTCCGTCTTATCTCTAGCTTGATGTGTCTTACAGAGGAAGACGGGCTTGAGGCAATTGGTTTTTGAGAGGGCCA-----
---ATACCTCGCGAACTGTGCCTCTCCCCCCGGCAGTTCCAAAATAGGTGATTCACTGATCCTCGCGGCGCCCCTCCTCG
GAGCCCGCCAAATTAGCTTGACCATCCACATTCGATTTTTGTATA-----------------------------------
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--------------------------------------------GGTGTTTTCACCATATTTATTTCCGTCCATTTTTCT
TTCAAGTTTTCTAAATTCTTTTTATGTTCCAAAAAATGAAAAAGAAATGTAGTAGTAACACTCAGTTTCAT-CTTTTTTT
AATCCCTACCCCTAATCACCCAGCCACTCTCGTAGTT-------------------------------------------
--------------------------------------------------------------AGCTTATTTGGAGTAGTG
AAGGGTATGCACAAGTATATTTAAATATATATTATAGAAAAATAAGTGTTCAAGTATAATTGATACCTCATCATTGGC--
------------------------------AAAAAAAGAGTTTTTTA----AAAAAATGCAAGAAGAAGAGATTAAGATC
TGATCATGCAAAGCATGAATGCAACGAACGTCTTCAACGACTGATTTGGCTCGCTTAATGCGC-ATATATCCCTTTCTTT
AAGCATCGGAGAAAGAAGGGCAGGAGGTCGCTTTCTCGCATGTCGGGGGCTTGCTTTCGGTTGCC-----TGATGTGCTC
CTCCGCACCCGCGCGTTGATGCATCCACGTCGCGCGTCCTCTCGTCGACCTCTTTGCCTATATACCACACAGAT--CATC
ACCGGCCGATGCACCCGCCGACCTCTCTTCTCCATCATACCACGCACTAACACCGATCGACACACGCCGAGGCGCAAAAA
GGATTCCATGATCGCTATTGCCGGCGCGGTGGTCGCCGGTGTGGCAGCCGCGGCCACGGCGGGGATTCTTGCCTTGGCGT
CGTCGCGCGGCGACCGGCCCGAGGATGCCACGAGCGCCGTGGCGGCGGCGGTTGTGC------CCCAGGAGTGCGCGGTG
TGCCTGTCGGAGCTGGTCGGAGCGGCGGAATTCTCCGGCGACTCTGAGCCATCGGCGGTGCCGGTACGCGTGCTGCCGGG
CTGTGGGCACTGGTTCCACGACGAGTGCATCGGCAGGTGGCTGCTGCTGCGCCCAGAGTGCCCGCTGTGCCGCTGCCCCG
TGGTCACCGCGGACAGTCGGCTAGGCAGGAAGGCCGTGGTGCCTGCCGTGCCGCTGGCGGAGGCCGCGCCTGCCTTGTCG
CGGCCGGCTAGGATCGCGTGCGGCTTCGGCGACGGGAGGGTCCTGTGGACGCGTAGCCCACCCGTGGCATTGTAAACGGC
CGTGTGAGGAAGGTCATCTGATTACTTGAGGATTAGTGAAACCAAAGTGGAACGAGTGCTTCAAGATTTCACATTACCCT
TGGTTGAGGGTGTGGAATCGGATTCATATGTGTC--------TATCATCATTGCTTTGTCCTCGTTTCATGTGCAAAATA
CTTGCGGATATTTCATACGTATTTATTCGAGAGCTTGTCACTTTATCACACGGGTGAA----------------------
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>SNPs
--------S----------S-----S------------------S-----------------------------------
----------S-----------------------------------S---S-----------------------------
----------S--------S-----S------------------------------------S---S----S--------
---------------------------------S-----S----------------------------------------
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----------------------------------------------------S---------------S-S---------
----------S---------------------------------------------------------------------
--------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
------------------------------------S--S-S--------------------------------------
-------------------------------------SSS-------SSSS-----------------------------
-----------------------------------------------------------------------S--------
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----------------------------------------------------------------------SS-SSS--S-
------------------------------------------------S-------------S-----------------
----------------------------S-------------------------------------S-----S-------
-----------------SS----------------------------S--------------------------------
-------------------------------S----------------------S---S----------------S----
------------------------------------------------------S-------------------------
--------------------------------------------------S-----------------------------
-----------------------------------------S----------------------------------S---
----------------------------------------S-----------------------------------SS--
-------S----------------------S-----SSSSSS--------------------------------------
---------S------------------S----------------------S------S-S--S-S------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_780
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----------------------------------------AGTATTTCCGGACGGAGGGA--------------------
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>reverse_2668
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---------------------------ACAAGCACTCAAGACCCTCG---------------------------------
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