>input_sequence_79930
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----------------------------------------AGTCTCCACCCACACCCAGCCCAGCACCAGCAGCAGAGCA
CACTGTCAGTCTGTCACACACCTCTGAACTCGACCAACCGCATCATCTCCATGGACGCGGTGGAGTCCTCGTCGCCCTAC
TCGCCGCTCTCGCTACGCCACAAGCTGCGGACCACCTTCTGCAGCTGCTTCGGCTCGCCGTCGTCGCCGGGCAGCGGCGC
CGGCGCGGAGAGGCCGCACAGCAGCGTTGGCAGGGCCAGGTGGAGGCGACGCGAGGCCGCCACGGGGGACTTCAGGTACG
ACCCGCTCAGCTACGTGCTCAACTTCGACGAGGGCGGCAGCGGCGGCGGCAGCGACGACGGCAACCGGGACGCGGAGGAC
GCCGCCTTCCGGTACCGGAACTTCAACTCGCGCCTGCCGCCCTCGCCGACACCGGCCCCCAGACGTCCCGCTACGAGTGA
TTGACAAAAAA---------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G504400
TGATGACACATCTGTCCTTATCGCAGCGCTCAAGCTGAGCTTAATAGTACTAATACATTGATCATGGGCAAAAGGCGTAG
CACTGACACTCACGCTTGATTTAACATAACGGAGGTACGCTTTGTTGATGGCGTGAGTGTGACGAATGGATCCTTATCCC
AGTCGATAGATAGATAAAGATCACGGGCAACTGGGCATAGTAGCACTAGCGCTCAAGCTGAGCTTAGTTTACGTCCGTAG
CTTAGTATACTGAGCTACGGACGTAAACTAACTTAATCACTACTGCCGTGGCTCCACCACCCCACCACAGGCATGGAGCA
ACAAGCAGTTTTGCGCCAAGCTGTCGAGCTGCACGTTTTGACCAAGCAGCGCTCACTTGTTGAACAAGAGTCGCCGTCGC
CACCACGGGACGGAAAGGAGCCTGCCATGGATCCAGGCGTCGCCTCCACCGATCTTGGCCGTCCGTCCGTCCGTCAGGGC
GGGCCGTACGACACGGGACCTTTCGCCTTGGCCGGGGTGCACCGTCGTAGCATCCGATTCGGCCGGCGTTCACATCCGTC
GGTTCCTTGTGCATTTTTCCCATCCCATAGAAAAACAGGAGTCCGTTTTCTCCCTTCTTTCGGCCGTGTGCTTCCTATCC
AGTTCTGTCTGACGAGAACGTGGTCCTGTCCGTAGTGGAGCCATAGCGTACATCCGCGTGAGCATCACATGTTTGACGAT
GGCCGATGGTGTTTAATAACAAAAGAAAGGACAGTAGACAGTACCAAAACGAACTGAACAAACGTGACAACAAAAATTGT
ACTGAACGCGGGTCGCCTCTATCTGTCTAACTGCACGCGTGCGCTACGGCGATACCCGCAGGCTGCTTTGCTTCCCCGCC
GTCGCCTGCGCGTCTCTTATACGCCCTTCACGCCGTCGACGTTCGCCGGCCCTTCTTATCCGTCTTTTCCCGCCCTCCCT
ATATATTATTTAGCCCCGCCTACCCCGTCCTGCCTTCTCCAGTCTCCACCCACACCCAGCCCAGCACCAGCAGCAGAGCA
CACTGTCAGTCTGTCACACACCTCTGAACTCGACCAACCGCATCATCTCCATGGACGCGGTGGAGTCCTCGTCGCCCTAC
TCGCCGCTCTCGCTACGCCACAAGCTGCGGACCACCTTCTGCAGCTGCTTCGGCTCGCCGTCGTCGCCGGGCAGCGGCGC
CGGCGCGGAGAGGCCGCACAGCAGCGTTGGCAGGGCCAGGTGGAGGCGACGCGAGGCCGCCACGGGGGACTTCAGGTACG
ACCCGCTCAGCTACGTGCTCAACTTCGACGAGGGCGGCAGCGGCGGCGGCAGCGACGACGGCAACCGGGACGCGGAGGAC
GCCGCCTTCCGGTACCGGAACTTCAACTCGCGCCTGCCGCCCTCGCCGACACCGGCCCCCAGACGTCCCGCTACGAGTGA
TTGACAAAAAACTACCACTTTAAGGATTTGCGTCCCACAGAACTACCACTTTAAAAAAA--TGACCGAAAACTACC-AAA
TTTTGTAATTTCGTGACTAAAAACTATCATTTTCAGATACCGGAAGGGC-------------------------------
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---------------------------------------------------------------------CGGCGCAGGCG
GGCGGCGGTGGCGCGGCTCGGCAGGTGCGGCCAGTCGCCGGCGGGGCACGCGCGGGTGGCGCGGTGGCGGGCTGCGATGC
A---GTAGCAGCAGCACGCATCA----------------GCAAGGAGAGCAGGGGAGCGCGGCAGCCAACGGCGGGGTGC
GGGTGAGCGAGGGAGCTGCGAGAGGTTGGCGGGGCGCGCGGCGCCAGCTCAAGCGTGCGAGGCGAGCGCAGCAGTAGGCC
GAGG-------------------------------------------------------------------------C-G
G-GGCGCGACGCCGGGCCCTCCCTGCTGAGCCCGGTGGACGGCGGCGGAGGTGGCGCGCAGGTGCGCACACAAGGTGTTT
GGA-AAAATGTCACAGAGAGAGGAGGAAGAAGGAGGAGGTTGACGCTGACAGATGGGCCCCGC-TGCCATAAACACGTTT
AAATTGTTTAAACTGGACATTATCTGAAAGTGATAGTTTTTAGTCACGAAATTAAAAA-AATT-TGGTAGTTTTCGGTCA
CTTTTTTTAAAACGGTAGTTCTGTGGGACGCAAACCCCTAAAGTGGTGGTTTTTTGTCAATCACTCTCTCGCTACGGTCA
CCATCGCCTGAACTTAATCGTACGCACAGATTTTTCTTTTTCACTTTACCATGTCAATGTCCTGGTTGTTCCCCATATAT
ATACAGGAAGAAGAAGAAGAAGCAGTTGAACAAAGGATTGTCTCCTCTTTTCCTCTCTGAGTTTGTTCGGTGGCGTGCTA
GGCGGGGCACACGCGCGATCTCCATCCATCTAGTACCTCAGTTCCGCGTGCGCTGCGCGGTTCAAACTTGAATTGAAAGG
ATGGGTAGAGGGAAAGGAATTATGGCTTTTACAATTTATTTTTTGGCGGCTAGGGAACTTTTTAAATCTTTATTTTGCTG
ATGAGTTGTACT
>chr7A_1430
GCTAAC--------------------------------------------------------------------------
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--------------------------------------------------------------------------GAGTGA
TTGATAGAAAACTACCACTTTAGGGATTTGCGTCCCATTGAACTACCACTTTAAAAGAA-GTGACCGAAAACTACCAAAA
TTTTGTAATTTCGTGACTAAAAACTACCACTTTCAGATAATATCCAGTTTA---------AACGTGTTTATGACAGGCAG
GGCCCATCTGTTAGCGCTGACGTGGCGTCAAAATCAACTTCACAGGGCGTCCGGCAGGGGCG---------GCTGCGTCG
GCCTTGCCAGAACTGGGTGGCTGTTACGCGCGACGGGGCGCTGGAGGCCCGGGGCGACGGCGGCGAGCGCCGGCGTCGGG
CGGCGGCTAGCAGCAGCAGCCCGGAGCGGCAGCAGCAGGCATCGCGGGCGGAGCGGCGCGGGACGGCTGTGGCGCAGGCG
GGCGGCGGTGGCGCGGCTCGGCA---------AGTCGCCGGCGGGGCACGCGCGGGTGGCGCGGCGGCGGGCTGCGATGC
A---GCAGCAGCAGCACGCATCA----------------GCAAGGAGAGCAGGGGAGCGCGGCAGCCAACGGCGGGGCGC
GGGTGAGCGAGGGAGCTGCGAGAGGTTGGCGGGGCGCGCGGCGCCAGCGCAGGCGTGCAAGGCGAGCGCAGCAGCAGGCC
GAGGTG-------------------------------------------------------------------------G
G-GGCGCGACGCCGGGCCCTCCCTGCTGAGCCCGGTGGACGGCGGCGGAGGTGGCGCGCAGGTGCGCACACAAGGTGTTT
GGG-AAAATGCCACAGAGAGA--AGGAAGAAGAAGGAGGTTGACGCTGACAGATGGGCCCTGCTTGTCATAAACACGTTT
AAATTGTCTAAACTGGATACTATCTGAAAGTGGTAGTTTTTAGTTACGAAATTAGAAA-ATTT-TGGTAGTTTTTGGTCA
CTTTTTTTAAAGCGGCTGTTCTGTGGGACGCAAATCCCTAAAGTGGTAGTTTTTTGTCAATCACTC--------------
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>chr6A_1431
CTAGA---------------------------------------------------------------------------
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----------------------------------------------------------------------------GTGA
TTGACAAAAAACTACCACTTTAGGGGTTTGCATCCCACAGAACTACCGCTTTAAAA-AA-GTGACCGAAAACTATCAAAA
TTTTCTAATTTCGTGACTAAAAACTACCACTTTCAGATAATGTCCAGTTTAGACAATTTAAACGTGTTTATGACAGGCGG
GGCCCATCTGTTAGCGCTGACGTGGCGTCAAAATCAACTTCACAGGGCGTCCGGCAGGGGCGGCTGCGTCGGCTACGTCG
GCCTTGCCAGAACCGGGCGGCTTATACGTGCGGCGGGGCGCTGGAGGCCCGAGGCG-------------------TCGGG
CGGCGGCTAGCA----------------GCAGCAGCAGGCATCGCGGGCGGAGCGGCGC----------------AGGCG
GGCGGCGGTGGCGCCGCTCGGCAGGTGTGGCCAGTCGTCGACGGGGCACGCGCGTGTGGCGCGGCGGCGGGCTGCGATGC
AGCAGCAGCAGCAGCACGCATCA----------------ACAAGGAGAGCAGGGGAGCACGGCAGCCAACGGCGGGGCGC
GGGTGAGCGAGGGGGCTGCGAGAGGTTGGCGGGGCGCGCGGCGCCAGCGCAGGCGTGCGAGGCGAGCGCAGCAGCAGGCC
GAGG-------------------------------------------------------------------------C-G
GAGGCGCGACGCCGGGCCCTCCCTGCTGAGCCCGATGGACGGCGGCGGAGGTGGCGCGCAGGTGCACACACAAGGTGTTT
GGG-AAAATGCCATAGAGAGAGGAGGAAGAAGAAGGAGGTTGACGCTGATATATGGGCTCCGCCTGTCATAAACACGTTT
AAATTGTCTAAACTGGACATTATCTGAAAGTGGTAGTTTTTAGTCACGAAATTAGAAA-ATTT-TGGTAGTTTTCGGTCA
CTTTTTTTAAAGCGGTAGTTCTGTAGGACGCAAACCCCTAAAGTGGTAGTTTTTTGTCAATCACTCTC------------
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>chr1D_1435
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--------------------------------------------------------------------------GAGTGA
TTGACAAAAAACTACCACTTTAGGGGTTTGCGTCCCACAGAACTACCACTTTAAAA-AAAGTGACCGAAAACTACCAAAA
TTTTGTAATTTTGTGACTAAAAACTATCACTTTCAGATAATGTCCAGTTTAAACAATTTAAACGTGTTTATGACAGGCGG
GGCCCATCTGTTAGCGCTGACATGGCGTCAAAATCAACTTCACAGGGCGTCCGGCAGGGGCG---------GCTGCGTCG
GCCTCGCCAGAACCGGGCGGATGTTACGCGCGGCGGGGCGCTGGAGGCCCGGGGCGACGGCGGCGAGCACCGGCCTCGGG
CGGCGGCTAGCAGCAGCAGCCCAGAGCGGCAGCAGCAGGCATCGCGGGCGGAGCGGCGCGGGACGGCTGCGGCGCAGGCG
GGCGGCGGTGGCGCGGCTCGGCAGGTGCGGCCAGTCGCCGGCGGGGCACGCGCGGGTGGCACGGCGGCGGGCTGCGATGC
AGCAGCAGCAGCAGCACGCATCAGCAGCAGCACGCATCAGCAAGGAGAGCAGGGGAGCACGGCAGCCAACGGCGGGGCGC
GGGTGAGCGAGGGAGCTGTGAGAGGTTGGCAGGGCGCGTGGCGCCAGCGCAAGCGTGCGAGGCGAGC-------------
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>chr7A_1567
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---------------------------------------------------------------------CGGCGCGGGCG
GGCGACGGTGGCGCGGCTCGGCAAGTGCGGCCAGTCACCGGCGGGGCACACGCGGGTGGCGCGGCAGCGGGCTGCGATGC
AACAGCAGCAGCACA-------------------CATCAGCAAGGAGAGCAGGGGAGCGCGGCAGCCAGCGGTGGGGCGC
GGGTGAGCGAGGGAACTGCGAGAGGTTGGCGGGGCGCGCCGAGCCAGCGCAGGCGTGCGAGGCGAGCGTAGCAGCAGGCC
GAGG-------------------------------------------------------------------------CAG
G-GGTGCGACGCTGGACCCTCCCTGCTGAGCCCGGTGGACGGCGGGGGATATGGCGCGCAAGTGGGCACACAAGGTGTTT
GGGAAAAATGCCACAGAGAGAGGAGGAAG---GAGGAGGTTGACGCTGACAGATATG-CCCGTCTATCATATACATGTTT
AAATTGTCTAAACTGGACATTATCTGAAAGTGGTAATTTTTAGTCATGAAATTAAAAA-AAAAATAGTAGTTTTCGATAT
TTTTAAAAAAAATGATACTTCTGTGGGACGCAAATCGCTAAAGTGGTAGTTTTTTGTCAATCACT---------------
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>chr4A_1592
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--------------GGCTCAGCAGGTGTGGCCAGTCGCCGGCGGGGCACATGCGGGTGGCGCCGCGGCGGGCTGCGATGC
AGCAGCAGCAT----------------------GCATCGGCAAGGGGAGCAGGGGAGCGCGGCAGCCAACGGCGGGGCGC
GGGTGAGCGAGGGAGCTGCGGGAGGTTGGTGGGGCGTGCGGCGCCAGCGCAGGCATGCGAGGCGAGCGCAGCAGCAGGCC
GAGGCGGGCCGGTGAAGCAAAGCAGCAGCCGTAGTGGCCAGCAACAGGAGGTGACGGGGCCGGGTTCAGCTGTTGCACAG
G-GGCGCGACGCCGGGCCCTCCCTGCTGAGCCTGGTGGACGGCAGCAGAGGTGGCGCGCAGGTGCACGCG--AGGTGTTT
GGG-AAAATGCCACAGAGAGAGGAGGAAGAAGGAGGAGGTTGACACTGACAGATGGGCCCCGCCTGTCATAAACACGTTT
AAATCGTCTAAACTTGTTATTACCTGAAAGTGATAGTTTTTAGTCACAAAATTAAGAAAATTT-TGGTAGTTTTCGGTCA
CTTTTTTTAAAGTGGTAGTTTTGTGGGACGCAAACCCCTAAAGTGATAGTTTTTTGTCAATCACTC--------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------------------S---------------------------------S-----------------------
-----------------------------S---------SS-SSSS-SS-------------------------------
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----------------------------------------------------------------S---------------
-----S-----------------------------------------------------------------------S--
------------------------------------------------S-------------------------S-----
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--S-------S-------------------------------------------------------S-------------
-------S------------------------------------------------------------------------
-----------------------------------------------S--------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_540
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----------------------------------------ACCGTCGTAGCATCCGATTC--------------------
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>reverse_2693
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----------------------------------------------------CTGCGCGGTTCAAACTTGAA--------
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