>input_sequence_79922
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATGCTGCGCTCCTGCGCCGGCCACGGCGCCAGGACGGTC
GCCTCTCCGCGCACGGCCACGCCGCCGCACCGCGGCAGGCGCCAGCACCTCCTCCGCCCGCGCAGCAGCGCAAAGAAGTC
CCCCCAGGAAGCAGAGCGAGGCGGGGGCAACGCCAACAACGGCCTCGCCGGCGCGCTCCCCAGCAAGACCGTGCTCCTGC
GCGCCGGCGCGGTTCTCTTCGCCCTCGGCTTCGTCGACGCCGGGTACGTGAGCTC--GCATCACGTCGGCCGGCGCGCAC
CGATCGCAAATAAACGGAGTCTCGTTGGCTTGCAGGTACAGCGGCGACTGGTCCCGCATCGGCGCCATCTCCAAGGACAC
CGAGGAGCTGCTCAAGCTCGGGGCCTACGCCGTCGTGCCTCTCTGCCTGGCCCTCGCACTCCGGATGCCCGGAGACGGCG
GCAGTGAATCTTAG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr4D_1_TraesCS4D01G251400
GACCGTGTTTCTTGCGACTACTCGTACCTTGCTTAAGTGTGCTCGCCGGGGGATAAACCATGTCTGGCTTTGGCCAGATC
AATGTCGGTGGCGTCCGCAGGCGTCGTTTCCTTCGTGAAGGCGGCGTTGTAGCTATTCTCTGGTCTTCGTGTTTCTCCAT
GTGAAAATCATGATCCTTTGGATCAGGCAATGGCGGTGTTTCAGTGTCATACTCTTCCTGAAGGCGCTATCTTAGAGTCC
ATGGGTTGTTTGGCAGGGACTTGATCACGATGAAGGACTTGGACGGCTTCAAGGAGTACTCTTGTTGCCATCTTTTGATT
GCTTATAGTGGTTTGAGGTGGTGTAGCTGTTCTGAGCATGGTTGTATCGTGTGTTGGGTGTGTATAATACGGTAACGTGT
TGTATGCTATGGGGTGTATGGTCGTTGCTTTAGCTGTCCATTTTTGTGTAAGATATGCTTCATTTTTACTTCAATTTACT
TGTGAGCGTTGGATGGAGTTGGTTCTTGCTCTTCGATTCATTTGCTATCCAATCATAAAATAATAATCTGTTGGCCATAC
GAGCCAAAGCATTACTATCTTCGTCCTGATTTATTAGTCATCTTCATATTTTGTGCTAAATTTTGATCTTAGATTTAACT
AACAAAATATTAATGCATGTAACTAAAAATAATATCATTGAAAACTATATTTAAATACGAATCTAACGATATAATTTTTG
GTGACATGCATTATTATTATTTTAATTAAATCTAAAATCAAAATTTGGCACAAAATACTTTGGGATCAATAAACCAGGAC
AAAGGTAGTATTATCCATCGCTTGAGCTGCAACAAGTCAGCAGGTCAAACAAAGGAGGAGCCGAGTCGTGCTCATGCGGG
GCAGCCAGCCAAGGTTCCTCCTGAAAGCATTCACAGTCAGATC-AGCTCCACCTCCCGCCGCTAACACACGTGTGGACGA
GAAAGAAACCTGAGCAAAGGGAGCGCATGACAAGCAGAGCAATGCTGCGCTCCTGCGCCGGCCACGGCGCCAGGACGGTC
GCCTCTCCGCGCACGGCCACGCCGCCGCACCGCGGCAGGCGCCAGCACCTCCTCCGCCCGCGCAGCAGCGCAAAGAAGTC
CCCCCAGGAAGCAGAGCGAGGCGGGGGCAACGCCAACAACGGCCTCGCCGGCGCGCTCCCCAGCAAGACCGTGCTCCTGC
GCGCCGGCGCGGTTCTCTTCGCCCTCGGCTTCGTCGACGCCGGGTACGTGAGCTC--GCATCACGTCGGCCGGCGCGCAC
CGATCGCAAATAAACGGAGTCTCGTTGGCTTGCAGGTACAGCGGCGACTGGTCCCGCATCGGCGCCATCTCCAAGGACAC
CGAGGAGCTGCTCAAGCTCGGGGCCTACGCCGTCGTGCCTCTCTGCCTGGCCCTCGCACTCCGGATGCCCGGAGACGGCG
GCAGTGAATCTTAGGAAGAGCGAGAGCTGCATACCAT-------------------------------------------
--------------------------------------------------------------------------GGTTCT
GTATTCTGCTCACTGCTCAGTGGGTCGAGCGGTCAGCTGTAAACTGCTTAGTGCTGGCAGAGTTTTAGAGGACCGGGGAG
G-TTTAGGAACTTCAGCAGTGTTTCTTGTTGCCTGTCTAGCGTCTAATTTTGGCAAATTGAACTGCATATTCCTTCCTTA
CCTGC--------ACGGATCCATACACATGCCTCGTGAATTTTCATATGTGGCTAAGTTTAGGAACTTCAGCATCTTCAG
CACTGTTTCTACTTGCTTGTCACAGTAGCCATGTTCTTCCTTACCTGGAAATATTCATACACGCGG----CTCAAGAATC
TTCATGTGTGGCTTGCCATATCAACTACTCAGTCACTCCGTTCTAAAATAATTGAAGTTTTAACTTTGTCCTAGATCAAA
CTGTTTTAAGTTTGACCAACTTTATATTATTATTTTTCTAATATATCATCAATATTAAAAAAAAATAGAATGAAAATATA
TGCTATGATGAATTCTTTTTGACGTGAAAGGCAGGTGCTCTGCCAATTTGATATACTCCCTTCGTAAAGAAATAAAAGAG
TGTTTAGATCACTACATCTTCCAGGGAGCAACTACACAGCCGGCGCAAAAGCCAAACGCACTTGATGAATCTAATAAAAC
TAATTTGGTGTAGTAGCTGTTTGCATAATGTTCTACAAATTTTGTCAACTTAAGTAAGTTTGACTTAAAACAAACTTAAA
CTTCAAATATTTTGAAACAGAGACAGTAGCATGTAGTGAGGGATGGGCATTAGCGTTACCCTGTTCTAGTTACTACAAAG
GTTAGGCTGTAAGGAAGCATCAAAGTTTGTATGGACTTCTTCGAATTTTTTAAGCAAGGACAGTAGAACAACCGTTTTAC
GGTAATTTCATTAATAAATAATATAAATATGTACAAAAGAGCAAAAAATAAAAAATGGAAGGAAACAACAAAAGCCCAAG
GCTCAATCAATTCCAACTCTAGGA
>chr4B_826
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCTGCAACAAATCAGCAGGTCATACAAAGGAGCTGAGTACTTT---TCATGCGGG
GCTGCCAGCCAGCCAGACTCTCGAAAGCGTTCACAGTCAGATCCAGCTCCACCTCTCGACGCTAACACACGTGTGGACGA
GAAAGAAACCTGAGCAAACAGAGCGCACAACAAGCAGAGCAATGCTGCGCTCCTGCGCCGGCCACGGCGCCAGGACGGTC
GCCTCTCCGCGCACGGCCACGCCGCCACACCGCGGCAGGCGCCAGCACCTCCTCCGCCCGCGCAGCAGCGCAAAGAAGCC
CCCCCAGGATGCAGAGTCAAGTGGGGGCAGCGCCAAGAACGCCCTCGCCGGCGCGCTCCCCAGCAAGACCGCGCTCCTGC
GCGCCGGCGCGGTTCTCTTCGCCCTCGGCTTCGTCGACGCCGGGTACGTGAACTC--ACATCACGTCGGCCGGCTCGCAC
GGATCATAGATAAACGAAGTCTCGTTGGCTTGCAGGTACAGCGGCGACTGGTCCCGCATCGGCGCCATCTCCAAGGACAC
AGAGGAGCTGCTCAAGCTCGGGGCCTACGCCGTCGTGCCTCTCTGCCTGGCCCTCGCACTCCGGGTGCCCGGAGACGACG
GCAGTGAATCTTAGGAAGAGCGAGAGCTGCATACCATTTCGTATTC--GTACTACTTGCTTATTCATT---TACGTGTCA
CTACCTTTCTGGATTGCATCCGAGTGAGCGGTAGACGACGCTTTTGAGGTAAGTAC--GAGAGTGTTTAACCATGGTTCT
GTATTCTGCTCACTCT-------GTTGAGCGGTCAGCTGCAAACTGCTGAGTGCCGACAGAGTTTTAGAGGAGCGGGGAG
GTTTTAGGAACTTCAGCAGTGTTTCTTGTTGCCTGTCTAGCGTCTAATTTTGGCAAATTGAACTGCATATTCCTTCCTTA
CCTGC--------ACGGATCCATACACGTGCCTCGTGAATTTTCATATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr4A_891
AAGCGT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TCCTCCTCAAAGCGTTCACGGTCAGATC-AGCTCCACCTCCCGCCGCTAACACACGTGTGGACGA
GAAAGAAACCTCAGCAAAGGGAGCGCACAACAAGGAGAGCAATGCTGCGCTCCTGCGCCGGCCACGGCGCCAGGACGGTC
GCCTCTCCGCGCAGGGCCACGCCGCCGCACCGCGGCAGGCGCCCGCACCTCCTCGGCCCGCGCAGCAGCGCAAAGAAGTC
CCCCGAGGAAGCAGAGCGAGGCGGGGGCAACGCCAAGAACGGCCTCGCCGGCGCGCTCCCCAGCAAGACGGTGCTCCTGC
GCGCCGGCGCGGTTCTCTTCGCCCTCGGCTTCGTCGACGCCGGGTACGTGAGCTCTCACATCACGTCGGCCGGCGCGCAC
CGATCGTAAATAAGCGAAGCCTCGTTGGCTTGCAGGTACAGCGGCGACTGGTCCCGCATCGGCGCCATCTCCAAGGACGC
CGAGGAGCTGCTCAAGCTCGGGGCCTACGCCGTCGTGCCTCTCTGCCTGGCCCTCGCACTCCGGGCGCCCGGAGACGGCG
GCGATGAATCTTAGGAAGCGCGAGAGAGAGCTGCATGGTGCATGCCATGTAGTGCTTGCTTATTCATGTAGTACGCGTCA
GTACCTTCCTGTACTGCATCCGAGTGAGCGGTAGACGACGCTTTTGAGATAAGTACGAGAGAGTGTTCAACCATGGTTCT
GTATTCTG----------------TTGAGCAGTCAGCTGTAAACTGCTGAGTGCTGACAGAGTTTTAGAGGAGCGGGGAG
GTTT-AGGAACTTCAGCAGTGTTTCTTGTTGCCTGCCTAGCGTCTAATTTTGGCAAATTGAACTGCATATTCCTTCCTTA
CCTGCACCGCTGCACGGATCCATACACATGCCTCGTGAATTTTCATATGTGGCTAAGTTTAGGA----------CTTCAG
CAGTGTTTCTACTTGAAGCCTGACTTGCCACGTTCCTTCCTTACCTGCAAGGATCCATACACGCGCCCGCCTCAGGAATC
TTCATGTGTGGCTTGCCATATCAACTACTCAGTCACTCCGCTCTAAAATAAT-GAAGTTTTATGTTTGTCCTAGATCAAA
CTATTTTAAGTTTGACCTACTCTATATTATTTTTCTG-----ATATCTACAGTATTAAAAATTTATGGAATGAAAATATA
TGTTATGATGAATTCTTTTTGATATAAAAGACAAGTGCTCTGCCCATTTCATAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>SNPs
S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS----------S-----------S---------SS-SSS-S-SSSSS---------
--S--------SSSS-------------S---------------------------------------------------
---------------------------SS---------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
---------------------------------------------------------S----------------------
------S---------S---------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------SSSSSSSSS--S----------------------S-------S---------------S-------
--------------------------------------------------------------------------------
----------------------------------------------------------------SSSSSSSSSS------
--S------------SSSSSSSSSS-SS-SSSS-S------------S--SS--S----------S--------S-----
----------------------------------------S-----------S---------SS----------------
--S--------------S---S---------S--S-SSSSSS-----SS--S---------SSS--S-------------
--S-------------------SS-S----S--S----------S----S----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_290
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGAAGGACTTGGACGGCTTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_2365
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GGGCATTAGCGTTACCCTGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
