>input_sequence_79915
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----------------------------------------AGATAAAAAATTAATATCAATGACGGTTGCATTGAATACA
AATTTGTTGATCAACTAATAGATGAAAGAGAGGTACTGGAGCTCCATATCTCTTTGTTTTGTTTCATGCCTCAATCACCT
TGTCATGCGTATATACTAATGTCGTCGTCATGTTGTCAGGAATGGATCAACCAGGGAACTTCACCCGCAATCACTACTTG
TGGGATGCCACAAGGGTTCGGCACTACCGGAGTTACTTCAGCCAGCTGAAGAAAGCCATGAATGGCGGTGCCACTGTTCT
TGGCTACTTTCCGTGGTCTCTCCTGGACAATGAGTGGATGTCTGGCTACACTTCCAAGATCGGCATGGTGTACGTCGACT
TCAACAGCCCCACCCTAGAACGGCACACCTCACATTCCTCCATATATATGACCTCACGCAAAAAAAAACCTCCAATGGTT
GGTCGTTTGTGA--------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr3B_1_TraesCS3B01G293800
AGACACTAAGACCAAGATCGATTTTGAGGTGAAGTCATATTTTTGTGTTTCCTATTTGTGCCTTTTATAAAAAAAATGGT
CTCACGTAAAAGTAGTGTATTTGTTTTTTATGATAAATCCCGCACATGAATACAGTACATTAAGAACAGTAAAACTGCAC
CTAATCCTTGCCCTCTCACGAATTAGACCTTTTTGGCCGCTTGATTTCGTTTGTTAAGCATTACTGATGGTTCGATCTAA
AGAAAACGCGATGTAGGCCGCGAGGTGGGCCTGTGGTTAATTGGGCCACTTTTCCCGCTCAGCCCAAGATAGGGAAGCCC
GCTTTAGCCTTACAAAAAATAAAAACCAGGGAACAAGGAGTCGAGCACCTCTCGTCGCTGCAGACAATGCCCCTCCTCTC
GCCGCTGCCGCCCATGACAGCATCTTGTCCCTCCTCGCTTTCCTGCACGCCGCTGTCACCACCTATACCTCCGCGTCCCT
TGCCCGCCTCGTGGTAGACCCTCGCTGCCGCCTACTGGATCCCGGCCGTGCCCCAATCCCTGCCGTCGCTGCCCCATTGC
CGGATCCCGCCAGCCATCCACTGTCCTGCCGTCAACGCCTTCCCTCTCCAAGCGCCTCCACGTCCCTCCTCTGCATTCTT
GGCACCGCAAGCCGGCCCCTCGAACTTCATCACTGTCTCTCTTCGAACGGATCAGATACATGTGCGGTGGTTCCTGCGTG
AGCGATCTGGACCTCTGTCGCCTTTTTGAAATGGAATCCGGCAACTAGGCGGCAAGAATCAGGCAGCAGCTCACCTCCAT
AGCCTACAACGGCGGCAAGGTCTGTATGCTCAACGCGGTTTTTTCTCTGCATTTTATTTAAACCTGCAGCGCCAACCATT
TATGTCTGATACTGAATTTTGAAGGCGGAAATACACTGAACTTAGGACAAGTGTTACTTTCTACTTAGGATCTGGCGTGA
CTAATTCAATCCACCTGGATGTGATTTGACAAAGAGTTTTAGATAAAAAATTAATATCAATGACGGTTGCATTGAATACA
AATTTGTTGATCAACTAATAGATGAAAGAGAGGTACTGGAGCTCCATATCTCTTTGTTTTGTTTCATGCCTCAATCACCT
TGTCATGCGTATATACTAATGTCGTCGTCATGTTGTCAGGAATGGATCAACCAGGGAACTTCACCCGCAATCACTACTTG
TGGGATGCCACAAGGGTTCGGCACTACCGGAGTTACTTCAGCCAGCTGAAGAAAGCCATGAATGGCGGTGCCACTGTTCT
TGGCTACTTTCCGTGGTCTCTCCTGGACAATGAGTGGATGTCTGGCTACACTTCCAAGATCGGCATGGTGTACGTCGACT
TCAACAGCCCCACCCTAGAACGGCACACCTCACATTCCTCCATATATATGACCTCACGCAAAAAAAAACCTCCAATGGTT
GGTCGTTTGTGAGCTCTCTATACACCTCTTCATTTATCAGATTCTTCAATCTGCGTATGGCTTGATCCGAAACCTCTACT
ATCATTGTTTGATGCATGTCTTTGTTTGGTTATGTGTAATGT--GAGTGAAGTTTATTTTAAACCTCGAATTCGTACGGC
TCG-----TCTGAAATGAACCCTGACTTCTCAATCCCTGAAATCGGAACCCTGTACTTACGGATCCCGGTCAACCTTAAC
CCTACACCTGCTTGGCACACCGGGAAAGAATCAATCCCGGCTGAGTTCATCACTAATCTCATTGACTATGCGGGTCCA--
-CTACATGTCATCTTCGTCTTCTTCCCAAATCTCTCTCTG------GCTAAGTCGATCCATGTTCTACTCGTGTCCGCAT
CTGCCAAGACGGGGCTCACGCAGTCACACTATACTCTGCAGCTCGTGTGTCC----GACGTTCTCGCGTGCGTGTGTCCA
GAAGAGATCGATCTAAT--CGATCAAGCTAGGCTCACGTCGATGTATAG--TAGTGCGTGCTTGTAGATGAATCGATCAA
GGCTTCAAGCTAT------CCATGTACATGCGCGTCTTCATGCGGAACTTCAGTACGAATGCGAACGGCCGGAAAGTAAA
CCGCCGAAGCTAGAGGAGGAGTGTCC---------ATGGTGGTGCACCGTGCGCAGTATCATGTGAGACGT---------
---------------TCTGCG------------------------TTTG-----TCAACTCCACAGTGCTTCTCCGAACG
ATTAGTCTGGTTGGGATGACTGCGTCGATGAGCTGAAGACAGCCACACCGATG----GCTGCCGCTCTCGACATCCATAG
CGACAACCCGACCGCTATCTTCCTCGACTCCGGTGATGACTTCACCATG-CTGTTCTCCTCCGATGGTGGGTTAAGACAA
GATTACCCGCATCCACGTGCTCCTCTTGTTGTGCTCTTGATCTCCCCGAGTCT-ATTTTTTGTTCCTGCAACCGCAGTA-
CCTCACCATGCATACGGACGTGGATTTTTAGAACAGCTGCACCCCGGCCCTGGTATCCTGGTTGTCCAATA
>chr5B_1542
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---------------------TTGTTTGGGTTCTGATGCATGTAGAATAAAGTCTATTTTAAACCTCGAATTCATACTGC
TCAGCTCATCTAAAATGAACCCTAATCACTCAGTCTCTAAAATCGATACCCTGTGCTCACGGATCCGTGTCAAGGTTAAC
CCTATACCTGTTTGGCACACCAGGAA----------CCGGCTGAGTTCATCGCAACTTTCGTTGACTACGCGGGTCCGAG
TCCACGTGTCATCTTCGTCTTCTTCCCCAATCTGTCTCTG------GCTGAATTAATCCATGTTGTACTCGTGTCTGCAT
CCGCCCGTACGGGG-TCACACGGTCACGCTATCCGCTACAGCTCGTGTGTCC----GACG-TCTCGCATGCGTGTGTCCA
GAAGAGATCGATCTAATATCGATCAA-CTAGGCTCACGTTG----------TAGTGCGTGCTTGTG-----------CAA
GGCATGAACCCAT---------TGTACGTGCGTGTCTTCCAG-------TCAGTATGAGTGCGACCGGCCAGAAAGTAAA
CTGCCGAAGCTCGAGGACTAGTC-----------CATGGTG-------GTGCGCAGTATCATGCGAGACCTTATGGCGGA
CTGCCGAGTGGCCGATCTGCG------------------------TTCG-----TCAACTACCCGGTGCTTCTCCAAACG
ATTCGTCTCATCAGGAGGACCGCGTCGATGAGCTGAAGATAACCACACCGAT----------------------------
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>chr4B_1562
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-----------------------------------------T--GAGTGAAGTCTATTTTAAACCTCGAATTCGTATCGC
TCG-----TCTGAAATGGACTCCGACCTCTCAATCCCTGAAATCGGTACCCTGTACTTTTGAATCCGAGTAAACCTTAAC
CCTACACCTGTTTGGCACACCGGGAAAGAATCAATCCCGGCTGAGTTCATCACTAATCTCATTGACTAGGCGGGTCCA--
-CTACATGTCATCTTGGTCTTGTTCCCCAATCTCTCTCCG------GCTAAGTCGATCCATGTCCTACTCGTGTCCGCAT
CTGCCAAGACGGGACTCACGCAGTCACACTGTACGCTGCAGCTCGTGTGTCCGATCGACG-TCTCGCGTGCGTGTGTCCA
GAAGAGACCGATCTAAT--CGATCAAGCTAGGCTCACGTAGACGTAGTAGCTAGTGCGTGCTTGTAGAGGAATCGACCAA
GGCATCAAGCTATCCATGACCATGTACATGCGCGTCTTCAT---------------------------------------
---TCGGAGCTAGAGGAGGAGTGTCCGATCCATGCATGGTGGTGCACCGTGCGCAGTATCATGCGAGACGT---------
---------------CCTGCG------------------------TTTTGTC----------------------------
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>chr7A_1563
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--------------------------------------------GAGTGAAGTCTATTTTAAACCTTGAATTCATACGGC
CCG-----T-TGAAATAAACCCCAACCTCTCAATCCTTGAAATTGATACCCTGTACTTATGGATCCCTGTCAATCTTAAC
CCTACACCTGTTTGGCACAGCGGGAAAGGAACGATCCCAACTGAGTTCATCGCTACTCTCATTGACTAGATGGGTCCA--
-C---ATGTCATTTTCGTCTTCTTCCCCCATCTCTCTCCTCTCTCTGCTGAATCAATC--------ACTCTTGTCCGCAT
CCGCCCAGACAGGGCTCACGCAGTCAAGCTATCTACTGCAGCTCGTGTGTCC----GTCA-TCTTGCATGTGTGTGTCGA
GACGAGATCGATCTAAT--CGATCAAGCTAGGCTCACATAG----------TAGTGCATGCTTGTAGAGGAATCGATCAA
GGCATCAATCCAG------CCCTGTACATGTGTGTCTTCAGGCAGAACTTCAGTACTAGTGCGACCGGCCGGGAAGTAAA
CAGCCCAAGCCTGAGGAGGAGTC-----------CGTGGTG-------GTGTGCAGTATCATACGAGACGT---------
---------------TATGGTGGACCGCCGGGTGACCGGGCTACATTCG-----TCAACTCCACGGTACTTCTCTGAACG
ATTCGTCTCGTCGGCAGGACTACGTCGATGAGCCGAAGACAACCACATCGATG----GCTGCCGCTCTCGATGTCCACAG
TGCCAAGCTGACCACCATCTTCCTCTACACCGGTGATGACTTCACCATGCCTGGTCTCCTCCGATGGCGGGTTAAGACAC
GATTTCCTGCATCCACGATCTCTTCTCGTCGTGCTCTTGATCTCCCACTCGCCAATTTTTTGTTCCTGTAGCCGCATCAC
CCTCACCACGCATAC--------------------------------------------------------
>chr2B_1565
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----------------------------------------------GTGAAGTCTATTTTAAACCTTGAATTTGTACGTC
TCG-----TCTGAAATGAACCCCAACCTATCAATCCCTGAAATCGGTACCCTGTACTTACGGATCCCGATCAATCTTAAC
CCTACACCTGTTTGGCACACTGGGAAAGAATCAATCCCGGCTGAGTTCATCACTAATCCCATTAACTAGGCGGGTCCAGT
AC---ATGTCAGCTTCATTTTGTTCCCCAATATTTCTCCA------GCTAAGTCAATCCATGTTCTACTCGTGTCCGCAT
CTACCAAGAGGGGTCTCACGCAGTCACACTATATGTTGCAACTCGTGCGTCCGATCGAGG-TTTCGCGTGCGTGTGTCCA
GAAGAGATCAATCTAAT--CGATCAAGCTAGGCTCATGTAGACGTAGTAGCTAGTGTGTTCTTGTATAGGAATCGAACAA
GGCATCAAGCTATCCATGACCATGTACATGCGCATCTTCATGCGGAACTTGAGTAGGAATGCGAATGGCCGGAAAGTAAA
CAGTCGGAGCTAGAGGAGGAGTGTCCGGTCCATGCATGGTGGTGCACCATGCGCAGTATCATGCGAGACGT---------
---------------TCTGCG------------------------TTTGTCAACTCAACTCCATAGTGCTTCTCCGAACG
ATTAGTCTGGTTGGGATGACTGCGTCAATGAGCTGAAGACAGCCACACCGATGCATGGCTGCCGCTCTCGAGATCCATAG
CGCCA---------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS--------S-SSSSS-SSSS------------S--------------------------
--------------------------S-------------------S---------------------------------
----------S---------------------------------------------------------S-----------
---------------------------S----------------------------------------------------
----------------------------------S-------------------------S-------------------
---------------------------------------S--S---SSS-------------------S-----------
---S----------------------------------------------------------------------------
-S-------------------------------------------------------------S----------------
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-----------------------------------------------------------------------S--------
--S---S-S----S-S---------S--S------------------------S-------------S-----------S
----S--S---------SS---S---S--S----------------SSSSS-S---------------S-S-----SS--
--------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_876
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--------------------------------------------------------TTTAAACCTGCAGCGCCAAC----
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>reverse_2469
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--------------------------------------------------------------------CAACCGCAGTAC
CTCACCAT---------------------------------------------------------------
