>input_sequence_79902
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---------------------------------------------------------ATGAGGTCGGTGGAGTACCAGTC
GTCGACCATGGCGCTGGTGCCGATCCTGGTCGCGCGCGGCGGCAGTGA------------GGGGACG---ACGGGCCCGA
ACCTAGAGGAGGAGCTCAAGGCGATCTTGGGCTCATCATGGCAGCAATTACAAACCGTAAGCCCCCATCATAATAACCCC
TCCCTTTTTGGAGATCTGTTGGTGAAAAGGGGCAATGATGAGTAAATGCTCTTCTCCGTGGCACAGGGGCATGTGTGTTC
CTGCTACAGCGTGATGATTCAAGAGGAGGACAGGTCCGTGCAGTCGAGCAGGGAGGT---GG---CTTCCTCCGACGTCT
CCGCCGCCGCCCCCGCCGGGAGCCCGGGCACCTCCGTCGCCATGGCCGTGGCCGCCAACGACAATAAAGCCATTGCCACC
ACCTCGGCGGACAATAA-----------------------------------------------------------GAGG
AGAAGGCTGCATTTTCCTCAGCGCCAGTAG--------------------------------------------------
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>chr7A_1_TraesCS7A01G479000
TGTATAGGAGGTGAGCTAGAGCACCACCAAGCCCTCTCCCCCTCGGTCAGAGAAAAATAGAGCACTGGGATGCTCTGCTC
GCGAGCGAGGGGTATATATAGGCACCTCATTGGTCCCGGTTGGTGACATGAGCCGGGACTAAAGGGGAACCTTTGGTCCC
GGTTCAAGCCACCAATCGGGACCAATGGTGGTGGGCCAGGAGCGAGGCCCGTTGGTCCCGGTTCATCCCACCAATCGGGA
CCAAAAGATCCAGGTGAACCGGGACCAATGGCCCATGTGGCCCGGCAGGCCCCCTGGGCTGACGAACCAGGACCAATGCC
CACATTGGTCCCGGTTCTGGACTGAACCGGGGCTAATGGGCTGACCCGGCCTGGACCAAAGCCCTGTTTTCTACTAGTGC
TACTACCTCCGACGTGACAAATCATAGGACACTAGACCAGAGGCACGTTACAAGAAGATGGCCGCTGCGCCGGTCTCGCA
CACATGCATGCATGCTCCGGCCGTCGATCCCCGGCCGGCCACCACGCAGTAAAGAGTTAAAAGCACTGAGAGTCCTACAA
CTTGCGCATAATGTGATGGTTTGGTTCTAAAACTTGCAAATTGATCCTACCCAGTCCCAGAAATTGTATCAAATGTGCAA
ATTTGATCCTGACCAATCATAGAGCGCCATGCGGGCGCGTGGGTGCCGATCCGGTCAGCGCGCGGCATTTTGCAAAGAGG
CCCCTGCCTTTCATTTGAATCTACCCACAGGACACGAAAACACCAGCCGTCCTCGTCCTCGGCACGCTCAAGTGGCAGAT
GATCGCCGGCACCCCGTTCCCGTACCTGAGCTGCTTCGCAGCCAGGTTCCGGCACGACGAGCGCAAGGCCATCGTCCTGC
GCGCCGTCAAGTGCATCTTCGCCTCCATCAAAGGTCAGACCACCCCCTGCTCCCGTTCCACCCCATCATCCCA-----TC
G-----GATCGGATCAT---GAAAAGATCTCTCGTGTGCGTGTGTGTGCAA----CGATGAGGTCGGTGGAGTACCAGTC
GTCGACCATGGCGCTGGTGCCGATCCTGGTCGCGCGCGGCGGCAGTGA------------GGGGACG---ACGGGCCCGA
ACCTAGAGGAGGAGCTCAAGGCGATCTTGGGCTCATCATGGCAGCAATTACAAACCGTAAGCCCCCATCATAATAACCCC
TCCCTTTTTGGAGATCTGTTGGTGAAAAGGGGCAATGATGAGTAAATGCTCTTCTCCGTGGCACAGGGGCATGTGTGTTC
CTGCTACAGCGTGATGATTCAAGAGGAGGACAGGTCCGTGCAGTCGAGCAGGGAGGT---GG---CTTCCTCCGACGTCT
CCGCCGCCGCCCCCGCCGGGAGCCCGGGCACCTCCGTCGCCATGGCCGTGGCCGCCAACGACAATAAAGCCATTGCCACC
ACCTCGGCGGACAATAA-----------------------------------------------------------GAGG
AGAAGGCTGCATTTTCCTCAGCGCCAGTAGGCAATG----GGAGGAGCTGGATGGATGT--TTTGGCTAGAGTTCAGCTC
GCAC-----TCCAGCTGCTGCTGATTTCTGTCA-CCCCCCTAGCCTTAGAC----TTTTTTTCATTAGCTTGAGCAGTGA
TTTTGGTGGTGGTGG---TGGCTAAATAGGGGGCAGGATTTGATTCTTGTGATTGTGCA------------ATTATTACA
GCTGATTGGTAAGTTAGGATCGGAAAGATTTTGGTTTTCAGGAGATCTTTCCCGTCCCAGGCTTAAAAAGGCGGTGTAAA
GAG--------------------------------------------GAGAGAGAGAGAGAGAGAAAGGCCAAGCAGCAG
TAGTGTACTGCTA---CAAAGAGCTCTCAGCTCAGCTCAAAGTGAGGTGAAAAGAAAAGAGTGTAAAG---CCTAGGCAT
GAGTTTCCAAGGGAATGATTTTGAGCAGGGCGCTGGGCATGTATTCGTGACGCTCCTCCCGGTGGTAACGCTCAAGTCAG
CACCAATCAGATGCCTCTCTGGTCTGGATCTGTTTCTCCTGTCATGTGAGTTTCCAAGGGAATGAAGGATGGCCTACTCT
TTTGCCTTTTGGCGATGTCTATGGCCTCCTTGCAAAGTGGGTTTCTTCATCGTTATTTCGTGTTGCTGCCGCATGATTAA
AGTATAACGATAAATAACGTGTTGCTGCCGCATGATTAAAGTATAACGATACTTCTTCTGTAATTTATCTGAAATAAACC
AGAGAAAATGAAAATAATCTCTCAACCATCAGAAACAGGTGAATAACTGATTATGGCTGCAGCATGGATCCGTAATGGTA
TGTACCGGTTTCACATCTGAAGGGCGTGACAGCAGCCCAGCTGAACTAAAGAATAAAATTATATCAGGCCTTCCGACAAA
GAGAGGCTAAAGGTTATGCGTATGCACAAGAATGGAGTAAGAGTGAAGTAGCGTCACCTGCTCCGAGCAGCAATCTCCTT
CTCCTGCCTCAAACATGCCGGGACAGAGATAGAATCAGACCCTTGAAGGAAAAGAAATTACAACGGTTAAT
>chr4D_770
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-------------------------------------------------TCCTCGTCCTCGGCACGCTCAAGTGGCAGAT
GATCGCCGGCACCCCGTTCCCGTACCTCAGCTGCTTCGCGTCCAGGTTCCGGCACGACGAGCGCAGGGCCATCGTCCTGC
GCGCCGTCAAGTGCATCTTCGCCTCCATCAAAGGTCAGACCATTC------CCCCTTCCATCCCATTTTCCCA-----TC
GGATCGGATCGGATCAT---AAAAAGAGCTCTCTTGTGTGTGTGTGTGTGTGCAGTGATGAGCTCGGTGGAGTACCAGCC
GTCGACCATGGCGCTGGCGTCGATCCTGGTCGCGCGCGGCGGCAGGGA------------GGGGACGGGGACGGCCCCGA
GCCTAGAGGAGGAGCTCAAGGCGATCCTGGGCTCATCATGGCAGCAATTACACACCGTAAGCCCCCATCATAATAGCCGC
ACCCTTTTTGGAAATCTGTTGGTGAAAAGGGGCAATGATGAGTAAATGCTCTTCTCCGTGGCACAGGGGCATGTGTATTC
CTGCTACAGCGTGATGATCCAGGAGGAGGGCAGGTCCACGCAGTCGAGCAGGGAGGTGGCGG---CTTCCTCCGGCGTCT
CCGCCGCCGCCCCCGCCGGGAGCCCGGGCACCTCCGTCGCCATGGCCGTGGCCGCCGACGACAATAATGCCATTGCCACC
GCCTCGGCGGACAATAATAA--------------------------------------------------------GAGG
AGAAGGGTGCGTTCGCCTCAGCGCCAGTAGGG-----------GGAGCTGGACGAATGT--T--GGCTGGAGTTCAGCTC
GCGCTCTGGTCTAGCTGCTGCTAATTTCTGTCG-CCCCCCTAGCCTTAGCC----TTTTTTTCATTAGCTTGAGCAGTGA
TTTTGGTGGTGGTGG---TGGCTAAATAGGGGGCAGGACTTGATTCTTGTGATTGTGCA------------ATTATTGCA
GCTGATTGGTAAGTTAGGATCGGAAAGATTTTGGTTTTCAGGAGATCTTTCCCAT-CCAGGCTTTAAAAGGCTGTGTAAA
GATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGCCAAAGCTGT-
--------TACTGCTGCAAAGAGCTCTCAGCTCAGCTCAAAGTGAGGTGAAAAGAAAAGAGAGTGCAAAGCCCTAGGCAT
GA------------------------------------------------------------------------------
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>chr4B_770
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-------------------------------------------------TCCTCGTCCTCGGCACCCTCAAGTGGCAGAT
GATCGCCGGCACCCCGTTCCCGTACCTGAGCTGCTTCGTGGCCAGGTTCCGGCACGACGAGCGCAAGGCCATCGTCCTGC
GCGCCGTCAAGTGCATCTTCGCCTCCATCAAAGGTCAGAGACCATT---CTCCCGTTCCACCCCATCATCCCA-----TC
G-----GATCGGATCATACTAAAAAGAGCTCTCGTGTGTGTGT--------GCAGCGATGAGCTCGGTGGAGTACCAGCC
GTCGACCATGGCGCTGGCGTCCATCCTGGTCGCGCGCGGCGGCAGGGA------------GGGGACGGGGACGGCCCCGA
ACCTAGAGGAGGAGCTCAAGGCGATCCTGGGCTCATCATGGCAGCAATTACACACCGTAAGCCCCCATCATAATAACCCC
TCCCTTTTTGGAAATCTGTTGGTGAAAAGGGGCAATGATGTGTAAATGCTCTTCTCCGTGGCACAGGGGCATGTGTATTC
CTGCTACAGCGTGATGATTCAGGAGGAGGACAGGTCCACGCAGTCGGGCAGGGAGGT---GG---CTTCCTCCGGCGTCT
CTGCCGCCGCCCCCGCCGGGAGCCCGGGCACCTCCGTCGCCATGG---------CCATGGTCCGTGGAGGGGTGGTTGAA
CAGGACCCCGTGGAGAGGGCTGGTTGAACAGTAGCCGGTGGAGGAGCGGTGGAGGCTAGATGAACATGAGTCCGTGGATG
AGAAGGGTCCATTCGCCTCAGGGCCAGTAGGCAGCCAGTAGGAGGAGCTGTGTGAATGT--T--GGCTGGAGTTCAGCTC
GCAC-----TCTAGCTGCTGCTAATTTCTGTCACCCCCCCTAGCCTTAGCCCTTTTTTTTTTCATTAGCTTGAGCAGTGA
TTTTGGTGGTGGTGG---TGGCTAAATAGGGGGCAGGACTTGATTCTTGTGATTGTGCA------------ATTATTGCA
GCTGATTGGTAAGTTAGGATCGGAAAGATTTTGGTTTTCAGGAGATCTTTCCCAT-CCAGGCTTTAAAAGGCTGTGTAAA
GAG--------------------------------------------GAGAGGT--AGAGAGAGAAAGTCCCAGCAGGAG
TACTGCACTACTGCTGCAAAGAGCTCTCAGCTCAGCTCAAAGTGAGGTGAAAAGAAAAGAG-------------------
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>chr4A_772
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---------------------------------------------------CTCGTCCTCGGCACGCTCAACTGGCGGAT
GATCGCCGCCACCCCGTTCCCCTACCTGAGCTGCTTCGCGGCCAGGTTCCGGCACGACGAGCGCAGCGCCATCGTCCTGC
GCGCCGTCAAGTGCATCTTCGCCTCCATCAAAGGTCAGACCAAAG---------GTTCCATTCCATTAATCCACCGGGTC
G-----AATCGGATCATACTAACAAGAGCTCTCGTGTGCGTGTGCCC----GCAGCGATGAGCTCGGTGGAGTACCAGCC
GTCGACGATGGCGCTGGCGTCCATCCTGGCCGCGCGCGGCGGCAGTGAGGGGACGGGGACGGGGACGGGGACGGGCCCGA
GCCTAGAGGAGGAGCTCAAGGCGATCCTGGGCTCATCATGGCAGCAATTACACACGGTAAGCCCCCATCATAATAGCCCC
GCCCTTTTTGGAAATCTGTTGGTGAAAAGGGGCAATGATGAGTAAATGCTCTCCTCCGTGGCACAGGAGCATGTGTATTC
CTGCTACAGCCTGATGATCCAGGAGGAGGACAGGTCCACGCAGTCGGGCAGGGAGGT---GGCGGCTTCCTCCGGCGTCT
CCGCGGCCGCCCCCGCCGGCAGCCCGGGCACCTCCGTCGCCATGG---------CCGACGACAATAACGCCATTGCCACC
GCCTCGGCGGACAACAATAA--------------------------------------------------------GAGG
AGACGGGTGCATTCGCCTCAGCCTCAGC-----GCCAGTAGGAGGAGCTGGATGGATGTTTT--GGCCGGAGTTCAGCTC
----------------GCTGCTGATTTCTGTCG-CCCCCCTGGCCTTAGCCC---TTTTTTTCATTAGCTCGAGCAGTGA
TTTTGGTGGTGGTGGCGGTGGCTAAATAGGGGGCAGGACTTGATTCTTGTGATTGTGCAATTATTGCAGCTATTATTGCA
GCTGATTGGTAAGTTAGGATCGGAAAGATTTCGGTTTTCAGGAGATGTTTCCCGTCCCAGGCTTAAAAGGGCACTGTAAA
GACGATAGAGAGAGGC------------------------------------------AGAGAGAAAGGCCACGCAGCAG
CAGTAGCACCCAGCTGCAAAGAGCTCTCAGCTCAGCTCAAAGTGAGGTGAAAAGAAAAGA--------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
---------------------------------------S----------------------------------------
-------------------------------------------S-SSSS-------------------------------
--------------------S------S--------------------SSS-----------S---------------S-
-----------------S-S------------------------------------------------------------
--------------------------S-------------------------S---------------------------
------------S---------------------------------------------------------------S---
---------------------S---------------SS-----------------------------------S-----
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S-------------------------------------------------------------------------------
------S------SS------------------SSS--------------------------SS----S-----------
-----------S-------------------------------------S------------------------------
--------------------------------------S--------------------------------------S--
------------------------------------------------------------------------S-------
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-----S---S--S------------------------------------------------S--SS-S------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_415
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---------------------------------------------------------------------------AGTGC
TACTACCTCCGACGT-----------------------------------------------------------------
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>reverse_2413
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------------ACATCTGAAGGGCGTGACAG------------------------------------------------
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