>input_sequence_79885
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-------------------ATGGACTACGATGACATGTTAGATTGGATCATATGGGTGCTTTTGTTGATCTTCGCCGTCA
TCGCTGCGCTCAGCGCCGCCGTGGCGCTCGCCGTGGCGATCGCCGAGGTGGTCCGTCACGTGCGGCAGCACTGCAAGTGG
CTGTCCATCGAGCGGCTGCTGGAGAGCATACCCGACGTCGCATACAAGCAGATGCCCGATCGAGACGGCGGCTCTCCGTC
---GGAGGAGGAGGGGAAGGAGTTGCGCCGGAGCCAGAGCTCGTGCGTGATCTGCCTGGCGCAGTACGAGGGCGGCGAGC
GGTGCAGCGTCCTGCCGGGATGCGGCCACGTGTTCCACAGGGGCTGCGTCGCGACGTGGCTGCACACCACGCACAACACC
TGTCCGCTCTGCCGGGCGACGATAGCCGCTGGCGCCGCGGCACGGAAGGACAACGCCGCAGAGGATATGGTGTAA-----
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>chr5D_1_TraesCS5D01G144900
CTAAATATATGAACTTTCCAGAGTAAATTTATGAAGTAGGAAAATGACAGCAAAGGCAAATGACTAGTATCAACCAGATT
TAGGTCCAACAACGTTCATTCTTGTAAACCCAAACAAGTTCACGGCTGAATCCTCTCGAGGAGACCAGTGAA--GAGATA
GAG------------------------------AGAGATATCA-------------------------------------
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-----------GGGAGGGTGTTTGGGGGAT-AGATAGATCAGTGGAGAGAAGGAAGGGGAATACTACCTGCATGT--GAG
GATTCACAGCCGAACAAAGCTGCCATGAGCTCGTACAAGGCCCACTGCGAGTCTGCGAGTCTTGTGCGGCGGGGCCAAGG
CACCTGGCCACGCTGTTGAATCGGCGGGGGAGGG-A--GGGGGGTCGAGGGGAGCGGCGCTCAACGGCGGAGAGGCGTGT
GCCCGTGGCAGAAGATGAGTCGCAGCGGCGCCGAAGGTAGGGAACTGCTTCCTGCGGCGGCTCATGGTGGCG--------
GGGAAGACGCGAGGCCTGGTGGGTTGGCAATGGGCAACGGCGGCGG-CAGGTCAGCGAAGGCAAGCTGGCGTCGTCAGGA
GGCGGCGCGAG-------GGAGGAGGCGGGGCGTGCGGCGGCGGTCGTTAGTGGAGGAG---GAAGGTCGTGG------G
GCTCGGGA----GTGGATAAGATTTGTGTTT-CTTT--TTTTTTTCA----GTTGAGAGCTGGACCGAGCGTGTGAGGTC
GCTGTCG-------CGTAGCGCGGCCACTCGATCTCGCCGAACAGTGCGCGTGCACTTTTAAGATTTTATGCAGGATTAA
TCCAGTAGGATTAATGTTAGCTAACTAACCTGCATCTCCACGTCAGTATAGATATTTGGGAAGGGATACTCGGAGTCGGA
GTGGGATACGATCCAGGCATTGAACTTGCATAGGTTGAATCCATCTCCAACTCCTTTCCTGATTCTATCGCCTAGA----
-TAACCTACCTCAGCCGCACGGGCGCACGCCGTCTAAGG-TATCGTTCACCGCAGCCGTCGCCCGT----CCCCACCGCC
GCGACCGCCGGCCATCGCCATGGACTACGATGACATGTTAGATTGGATCATATGGGTGCTTTTGTTGATCTTCGCCGTCA
TCGCTGCGCTCAGCGCCGCCGTGGCGCTCGCCGTGGCGATCGCCGAGGTGGTCCGTCACGTGCGGCAGCACTGCAAGTGG
CTGTCCATCGAGCGGCTGCTGGAGAGCATACCCGACGTCGCATACAAGCAGATGCCCGATCGAGACGGCGGCTCTCCGTC
---GGAGGAGGAGGGGAAGGAGTTGCGCCGGAGCCAGAGCTCGTGCGTGATCTGCCTGGCGCAGTACGAGGGCGGCGAGC
GGTGCAGCGTCCTGCCGGGATGCGGCCACGTGTTCCACAGGGGCTGCGTCGCGACGTGGCTGCACACCACGCACAACACC
TGTCCGCTCTGCCGGGCGACGATAGCCGCTGGCGCCGCGGCACGGAAGGACAACGCCGCAGAGGATATGGTGTAACAAGA
AGCCTAGAAGTAGAGTCTCGTTTTTATCCCACAGTTTTTGTTGCAGTTCAGGTTATATTGAGGCACACTTTTGTAATTAA
GCAAGTATACTGTATTCTGATGCCAAAGAAAAAGCAAGTATACTGTATTTCTCTGAGCTTGATTTTTGCAGAATAATTGT
GGCACTGA----TTAATTGGGTGCTTGAAACGTTTT-TTACATCAGCCGAATTCGTGGACCGCTGGATCAAAATCGGACG
GACCCACTCGCCTCCTTTGGTCGACGCTCAGCCACCGCCCTGACCACCCCTCTAAACATGCACCCGACTAGATTTCTCCG
ATGACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTCAATCTGTTTCCTTTCCTCCGCTTGGGACGTCGCATCTTGCTGCCGCTAGCAGCATT
GTCCCCATCCTGGCTTGGCCTTGCCGGTAAGGACGCTCCATGCTTCGTCCCGTGACGTCGCACCCGTCTTTAGGCTCGCC
ACGAATGATTTCTTTTGCGAGAAAAAGAAAATTCAAGTACATGAGCTTTAACAAACGCTCTGAATAATAAAAAAAACTAG
GTGACATCAAAGCACCAAATATCCCCACTACTTTGTCTCT
>chr5D_1
CTAAATATATGAACTTTCCAAAGTAAATTTATGAAGTAGGAAAATGACAG---------------AGTATTAACCAGATT
TAGATCCAACAATATTCATTCCTGTAAATCCAAACAAGTTCACGGCTGAATCCTCTCGA----------------AGAGA
GAG------------------------------AGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCTACCTGCATGTGATGGGCACTTGAGTAGGCGATGGAGCCCTCACGG-------------------CTAAGTGC--GAG
GATTCACAGCTGTGCGCAGCCGCG--------------------------------------------------------
---------------------------------------------------------------------GAGCGGCGTGT
GCCCATCGCAGAAGATGAGTCGCAGCGGCGCCGGAGGTTGGGGATTGCTTCCTGCGGCGGCTCATGGTGGCGCCCTGGAG
GGAAAGACGCGAGGCCTGCTGGGGTGGCGATGGGCAATC---------------GCGACGGCGAGTTGGCGTTGTCAGGA
GGCGCGCGAGGGAGGACCGGAGGAGGCGGGGTGCACAGCGGCGGTGGTTAGTGGAGGAA---GAAGGTCGTGC------T
GCTCGGGA----GTGGATAAGATTT-----TCCTTT--TTTCTTTTA----GTGGAGAGATGGACCGAGCGTGTGAGGTC
GCTGTCCGCTGTCGCGTAGCGCGGCCGCTCGGTGTCGCGAAACAGTGCGCGTGCACTTTTAAGATTTTA-----------
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>chr7D_1
CTAAATATATGAACTTTCCAGAGTAAATTTATGAAGTAGGAAAATGACAGCAAAGGCAAATGACTAGTATCAACCAGATT
TAGGTCCAACAACGTTCATTCTTGTAAACCCAAACAAGTTCACGGCTGAATCCGCTCGAGGAGACCAGTGAAGAGAGATA
GAG------------------------------AGAGATATCA-------------------------------------
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-----------GGGAGGGTGTTTGGGGGAT-AGATAGATCAGTGGAGAGAAGGAAGGGGAATACTACCTACATGT--GAG
GATTCACAGCCGAACAGAGCTGCCATGAGCTCGTACAAGGCCCACTGCGAGTCTGCGAGTCTTGTGCGGCGGGGCCAAGG
CACCTGGCCACGCTGTCGAATCGGCGGGGGAGGG-AGGGGGGGGTCGAGGGGAGCGGCGCTCAACGGCGGAGAGGCGAGT
GCCCGTGGCAGAAGATGAGTCGCAGCGGCGCCGAAGGTAGGGAACTGCTTCCTGCGGCGGCTCATGGTGGCG--------
GGGAAGACGCGAGGCCTGGTGGGTTGGCAATGGGCAACGGCGGCGA-CAGGTCAGCGAAGGCAAGCTGGCGTCGTCAGGA
GGCGGCGCGAG-------GGAGGAGGCGGGGCGTGCCGCGGCGGTCGTTAGTGGAGGAG---GAAGGTCGTGG------G
GCTCGGGA----GTGGATAAGATTTGTGT----TTC--TTTTTTTTA----GTTGAGAGCTGGACCGAGCGTGTGAGGTC
GCTGTCGGCTGTCGCTTAGCGCGGCCGCTCGATCTCGCCGAACAGTGCGCGTGCACTTTTAAGATTTTA-----------
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>chr6A_1
CTAAAAATACGAACTTTCCAGAGTAAATTGATGAAGTAGGAAAATGACAGCAAAGTCGGACTACCAGTATCAACAAGATT
TAGATCCTACAACGTTCATTCTTGTAAAACCAAACAAGTTCATGGCTGAATCCTCTCGAGGAGACCAGTGGAGAGAGAGA
GAG------------------------------AGAGAGAGCG-------------------------------------
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-----------GGGAGGGTCTTTGGCGGGAGAGATAGATCAGTGGAGTGAAGGAACGGGAATACTACCTGCATGTGAGAG
GATTCACAGCCGTGCGGAGCCGCCATGAGCTCGTACAAGCTCCGCTGC--------AAATCTTGTGCGGCAGGGGCAAGG
AACCTGGCCGCGCTGTAGAATCGGCAGGGGAGGGGATGGCCGA------GGGAGCGGCGCTCAACGGCGGAGAGGCATGT
GCCCTTGGCAGAAGATGAGTCGCAGCGGCGCCAGAGGTAGGGGACAACTT--TGTGGCGGCTCATGGTGGCG--------
GGGAAGACGTAAGTCCTGCTGGGGTGGCGATGCGCAACCGCAACGG-GAGGTCAGCGACGGCGAGCTGGCATCGTCAGGA
GGCGGCGCGAG-------GGAGGAGGCGGGGTGCGCGGTGGGTGTCGCTAGTGGAGGAA---GAAGGTAGTCG------G
GCTCGGGA----GTGGATAAGATTTGTCT----TTTCC-TTATTTTTAGTTGAGAAGAGATGGACCGAG--TGTGAGGTC
GCTGTTCGCTGTCACATAGCGCGGCCGCTCGGTCTTGCCAAATAGTGCGCGTGCACTTTTAAGATTT-------------
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>chr2A_1
CTAAATACATGAACTTTCCAGAGTAAATTTATGAAGTAGGAAAATGACAGCAAAGGCAGATTACTAGTACCAACCAGATT
TAGATCCAATAACTTTCATTCTTGTAAACCCAAACAAGTTCACGGCTGAATCCTCTCGAGGCGACCAATGAAGAGAGAGA
GAG-------------------------GAGGGGGAGAGATCA-------------------------------------
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-----------GGGAGGGTGTTTGGGGGGAGAGATAGATCAGTGGAGAAAAGGAAGGGGAATATTACCTGCATGT--GAG
GATTCACAGCCGTGCGGAGCTGCCATGAGCTCGTCCAAGCCCCACTGG--------GAGTCTTGTGCAGCGGGGGCAAGG
CACCTGGCCGCGTTGCCGAATCGGCGGGGGAGGC-AGT----AGTCGAGGGGAGCGGCGCTAAACGGCGGAAAGGCGTGT
GCCCGTGGCAGAAGATGAGTCGCAGCGCCGCCGGAGGTCGGGGACTGCTTCCCGTGGTGACTCATGGTGGCG--------
GGGAAGACGCGAGGACTGCTGGGGTAGCGATGGGCAACCACGACGAGCAGGTCGGCGACGACGAGTTGGCGTCGTCAGGA
GA------------------------CGGGGTGCGCGGCGGCGGTGGTCAGTGGAGGAG---GAAGGTCGTGGCCGTGGG
GCTCGGGAGTGGGTGGATAAGATTTGTTTTTCCTTT--TTTTTTTCA----GTTGAGAGATGGAACGAGCGTGTGA--TC
GCTGTCGTTTGTCGCGTAGCGCGGCCGTTCGTTCTTGTCAAATAGTGCGCGTGCACTTTTAAGCTTT-------------
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>chr4B_1
CTAAATATATGAACTTTGAAGAGCAAATTTATGATGTAGGAAATTGACAGCAAAGGCAGATTACTAGCATCAACCAGATT
TAGATCTAACAACGTTCATTCTTGTAAACCCAAACATGTCCACGGCTGAATCCTCTCGAAGACACCAGTGAAGAGAGAGA
GAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGATCA-------------------------------------
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-----------GGGAGGGTGTTTGGAGGGGGAGATAGATCAATGGAGAGAAGGAAGGGGAATACTACCTGCATGT--GAG
GATTCACAGTCGTGCGGAGCCGCCATGAGCTCGTACAAGCCCTGCTGA--------GAGTCTTGTGCAGCAGCAGCAAGG
CACGTTGCCGCGCTGTCGAACCGGCCGGGGAGGGGAGT----GGTCGAGGGGAGCGGTGCTCAATGGCATAGAGGCGTGT
GCCCGTGGCAGAAGATGAGACGCAGCGGCGCTGGAGGTTGGAGACTGCTTCCTGTGGCGACTCATGGTGGCG--------
TGAAAGACGCGAAGACTGTCGGGGCCGCGATGGGCAACAGCGACGG-GAGGT---CGGCGACGAGCAGGCGCCATCAGGA
GGCGGCGCTAG-------GGAGGAGGCGAGGTGCGCGACGGCGGTGGTTACT---GGAG---GAAGGTCGTGG------G
GCTCAGGA----GTGGATAAGATTTGTTT----TTCCTTTTTGTCTA----GTGAAGAAATAGACCAAGCATGTGAGGTA
-CTGTCGGGTATGGCGTATTGCGGCCGCTCGGTCTCGCCAAATAGTGCACGCGCACTATTAAGATT--------------
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>chr1A_1
CTAAATATATGAACTTTCCAGAGCAAATTTATGATGTAGGAAATTGATAGCAAAGGCAGATTACTAGTATCAACCAGATT
TAGATCTAACAACGTTCATTCTTGTAAACCCAAACAAGTTCACGACTAAACCGTCTCGAAGACACAACTGAAGAGAGAGA
GAG------------------------------AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTA-----
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----------------------------GGGATATAGATCAATGGAGAGAAGGAAGGGGAATACTACCTGCATGT--GAG
GATTCACAGTCGTGTGGAGCCGCCATGAGCT---------------GA--------GAGTCTTGTGCAGTGGGGGCAAGG
CACGTTGCCGCGCTGTCGAACTAGCCGGGGAGGGGACT----GGTCGAGGGGAGCGACGCTCAATGGCAGAGATGCATAT
GCTCGTGGAAGAAGATGAGACGCAGCGGCGCTGAAGGTTGGGGACTGCTTCCTATGGTGACTCATGGTGGCG--------
TGAAAGACGAGAAGACTGCCGGGGTCACGATAGGCAACAGTGACGG-GAGGTG---GGCGGCGAGCTGACGCCGTCAGGA
GGCGGCGCGAG-------GGAGGAGGCGAGGTGCGCGGCAGCAGTGGTTACT---TGAGGAGGAAGGTTATGG------G
GCTCTGAA----GTGGATAAGATTTGTTT----TTTCC-TTTTTTTA----GTTGAGAGATGAACCGAGCGTGTGAGGT-
GTTGTCGGGTATGGCATAGTGCGGCCGCTCAGTCTCGAGAAATAGTGCGTGTGCACTTTTAAGATTTTA-----------
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>chr5B_743
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-----------------------------------------------------------------------CAGGATTAA
TCCAGTAGGATTAATGTTAGCTAACTAACCTGCGTCTCCACGTCAGTATAGATATTTGGGAAGGGATACTCGGAGTCGGA
GTGGGATACGATCCAGGCATTGAACTTGCATAGGTTGGATCCATCTCCAACTCCTTTCCTGATTCTATGGCCTACA----
-TAACCTACCTCGCCCGCACAGGCGCACGCCATCTAAGGATATCGTTCACTGCAGCCGTCGCCCGTACGTCCCCACCGCC
ACGACCGCCGGCCATCACCATGGACTACGATGACATGTTAGATTGGATCATATGGGTGCTTTTGTTGATCTTCGCCGTCA
TCGCTGCGCTCAGCGCCGCCGTGGCGCTCGTCGTGGCGATCGCCGAGGTGGTCCGTCACGTGCGGCAGCACTGCAAGTGG
CTGTCCATCGAGCGGCTGCTGGAGAGCATACCCGACGTTGCATACAAGCAGATGCCCGATCGAGACGGCGGCTCTCCGTC
------GGAGGAGGGGAAGGAGTTGCGCAGGAGCCCGAGCTCGTGCGTGATCTGCCTGGCGCAGTACGAGGGTGGCGAGC
GGTGCAGCGTCCTGCCGGGATGCGGCCACGTTTTCCACAGGGGCTGCGTCGCGACGTGGCTGCACACCACGCACAACACC
TGTCCGCTCTGCCGGGCGACGATAGCCGCCGGCGCCGTGGCACGGAAGGACAACGCCGCAGAGGATATGGTGTAACAAGA
AGCCTAGAAGTAGAGTCTCGTTTTTACCCCACAGTTTTTGTTGCAGCTCAGGTTATATTGAGGCACATTTTTGTAATTAA
GCAAGTATAA---------------------------------TGTATTTCTCTGAGCTCGGTTTTTGCTGAATAATTGC
AGCACCTATTTTTTCATCGGGTGCCTGAAAACGTTTTTTACATCAGCCGAATTCGTGGACCGTTGGATCAAAATCGG---
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>chr5A_743
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-----------------------------------------------------------------------CAGGATTAA
TCCAGTAGGATTAATGTTAGCTAACAAACCTGCATCTCCACGTCAGTATAGATATTTGGGAAGGGATACTCGGAGTCGGA
GTGGGATACGATCCAGGCATTGAACTTGCATAGGTTGAATCCATCTCCAATTCCTTGTCTGATTCTATCGCCTACATAAC
CTAACCTACCTCGCCCGCACGGGCGCACGCCGTCTAAGGATATCGTTCACCGCAGCCGTCGCCCGT----CCCCACCGCC
GCGACCGCCGGCCATCGCCATGGACTACGATGACATGTTAGATTGGATCATATGGGTGCTTTTGTTGATGTTCGCCGTCA
TCGCTGCGCTCAGCGCCGCCGTGGCG------------ATCGCCGAGGTGGTTCGTCCCGTGCGGCAGCACTGCAAGTGG
CTGTCCATCGAGCGGCTGCTGGAGAGCATACCCGACGTCCCATACAAGAAGATGCCCGATCGAGACGGCGGCTCTCCGTC
GGAGGAGGAGGAGGGGAAGGAGTTGCGCCGGAGCCAGAGCTCGTGCGTGATCTGCCTGGCGCAGTACGAGGGCGGCGAGC
GGTGCAGCGTCCTGCCGGGATGCGGCCACGTGTTCCACAGGGGCTGCGTCGCCACGTGGCTGCACACCACGCACAACACA
TGTCCGCTCTGCCGGGCGACGATAGCCGCCGGCGCCGTGGCACAGAAGGACAACGACGCACAGGATATGGTGTAACAAGA
AGCCTAGAAGTAGAGTCTCGTTTTTACCCCACAGTTTTCGTTGCAGCTCAGGTTATATTGAGGCACACTTTTGTAATTA-
------------------------------AAAGCAAGCATTCTGTATT-------------------------------
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>SNPs
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----------------S---------------------------------------------------------------
----------------S---------------------------------------------------------------
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--------------------------S------------------------------------------SS---------
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--------------------------------------------------------------------------S-----
------------SS------------------------------------------------------------------
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------------------------------S-------------------------------------------------
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-----------------------------S-------S------------------------------------------
--------------------------S-------------------S---------------------------------
---------SSSSSSSSSSSSSSSSSSSSS--------S--S-----------------S-S-------S---------S
S----SS-------S--S------S-----SSS-----------------------------S--------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_417
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----------------------------------------------------------------------------TGAG
GATTCACAGCCGAACAA---------------------------------------------------------------
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>reverse_2431
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------------------------------TTTCCTTTCCTCCGCTTGGG------------------------------
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