>input_sequence_79880
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-------------------------------------------------------ATGCACGCCGACCAGCTATTACCGG
CGGTCGTCGCCGCCGTGGCCCTGGCTTGCCTGCTCATCGCCGGCCGGGCCGATGGCCTCGAGGAGTA---CGCCCCTACT
GGCGCGGTGAGCCTGGAGATGGAGCCGCTGTCCATGAACCAGAACCCCGGGCAGTACCTCCCGCGACCGGAGGTGATGCC
GCTGCCGACCGATCTGCTCTCAAGGCCGGACGCGGGTGGCGACGGTGAGGAGTACGTCCCGCAGGTGGAGGTCGTGCCAG
AGGTGGTGGTGCAGCCGGGCGACCCCCTCGCCGAGGCACTCGGCGGCGGCTCGTACGTCGCAGAGCAGCCAGCGACGGAG
CCGGTCACGTTCGGC---------GGCGACTTCTACCGCGCCGGTATGACACCGAGCT---CACAGCCGCCGGCGAAGCC
GTCTTCCCCTGATCAGAAGAAGTATGGCGGCTCGCCCAAGTGA-------------------------------------
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------
>chr5B_1_TraesCS5B01G011000
ATGGATGAGATCACGTCGTACGAAAATCGTACACACAGCAATTTCGCCCCCGTAAATCTCCACCCAAAACCATCCCACTC
CTTTATCTCCATGTCAATGTGGTACCTCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTATTTGTAAATCATTAAACACAGTTAGTCCGCCACTCTGGCCATTACTTTTGTGAGCCATCACGTTGGGGAGAC
CT-ACTTCCATCTCAGCTACTCCAATCCCTTAATATTCG-----------------------------------------
----------------------------------------TTTCTGTTTCTGACAAGAAGAAAACATCGTGGTCCTCCTT
CTCTTGGACATCCAGGAGACCTCGAATTGCCGGACCATTCCCCAAACCACACAATTCGATGCCACTAGTTTCATTGATTC
CCACGGGGCTGATC---CACGGCCCCACATTCTTTGCTTTGGTCACCTGCTCATCTCTCTTCCGTCTCTTCCCCAGCTCT
CATGTCTACTCAGCATCCATGTCCATTGC---------------------------------------------------
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-------------------------------TTTCTTAGAATAAGATAGACGTTTCTCCCTAGCCACTCTCATTTTAGGA
CGTCCATTGTTGGCAATATGGTTCAGGACATCCATTGCATTTTGAATGGCGGTTGTCTCGTCTGGTTAGTGCTAAAATAG
CAGTGGCCACCAATCCATGCCAAAAATAGTACCTCCCATCCTCTGGTGGGTACATAAACACGTACGCGCCAACCAGCAAA
TGACAAGGAAATTAGTGC----AAA----TCTCACATTAGTTCCGTTAACCGACCATGCACGCCGACCAGCTATTACCGG
CGGTCGTCGCCGCCGTGGCCCTGGCTTGCCTGCTCATCGCCGGCCGGGCCGATGGCCTCGAGGAGTA---CGCCCCTACT
GGCGCGGTGAGCCTGGAGATGGAGCCGCTGTCCATGAACCAGAACCCCGGGCAGTACCTCCCGCGACCGGAGGTGATGCC
GCTGCCGACCGATCTGCTCTCAAGGCCGGACGCGGGTGGCGACGGTGAGGAGTACGTCCCGCAGGTGGAGGTCGTGCCAG
AGGTGGTGGTGCAGCCGGGCGACCCCCTCGCCGAGGCACTCGGCGGCGGCTCGTACGTCGCAGAGCAGCCAGCGACGGAG
CCGGTCACGTTCGGC---------GGCGACTTCTACCGCGCCGGTATGACACCGAGCT---CACAGCCGCCGGCGAAGCC
GTCTTCCCCTGATCAGAAGAAGTATGGCGGCTCGCCCAAGTGAAGAACACAAATTAGACAATTGGTTAAGAATACTAATC
CAAAGGGACCCTAGCCTATAATCCCGTTGCTCTTCCCTTAGCAAGTTTGTTTCCTGTTACAGAAAAATAAAGGGGC---C
ATGTAACGTGTGCATGTGCACGTCTTGGCCGAGAGAAGGTTTTACTTACCTTAGTGGGTTTTTTTTTTTTTGTATGTCAA
GAGCCAGACTCGAGTTTTAAGAAAAGGGGCTTAATAACCGGCGAACGTTCCGCCGAATTGCTATAGATCAGAACACTTCA
ATAGTTCTTTATTTTTTCCTTAAAAAAGTTCTTTATTTTCTCCTTTCTTTCCTAACTAAACATGTATGCATGCATGTATA
CTGTGTACACGAGTAGTTAGTTTAATCAGCACCACTTAATTAGCACCATGAGTGTTCGGGCATTTGGGGAAAGCTTTACA
AATATATTTGGGCATTTGGCGGAAGGTTACTTCTTGTCATATGATTAACATTTGGCAGGGTGATTAGTGTTTAGGTATTT
GGCGGAAGCTTTGCAAATATATTTGGGCAAGGTTACTTCTTGCTATATGATTAACATTTGGCAAAGTGATTAGTTTTCTA
TTAAGGTTATTTATTAGTTCTTGCCAAGAAGGCTAGCTTTGGCTGAAACTACACTGGCACATGGATTAATAACCTTCCGC
CAAATAAAAAGCTACTAATCACATTTTTTAAGGGAACCACGTAATTATTTGATGATTAAAATTTAACAGAGACGGATATT
TACGGCTAGGCCTTCCACATCCATGTCCGCGGACAAATGCGAGAGGAAATTTGCGGATCGGCGTTGGAGATGCCTTTACA
CGGGCCGGTTCACCTCGGAGGATAGCGCAAGCTAAGGAGTAGCACGATCTCACTATAAATTAATTGAGTGTATTTTATCG
GCCGCACGGCTTATATTATAGCGGAAAAAGTCCAAAACAGACCTTGAAGTTGTAGACGAAAGCTAAACCAAACCCTGAAC
ATTGAA
>chr5A_55
------------------------------------------------------AATCTCCACTCAAAACTACCCCACTC
CTTTATCTCCATGTCAATGTGGTA--------------------------------------------------------
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-------------------------------AGTCCGTCACTCTGGCCATTGCTTTTCTGATCCAGCACGTTAGGGAGAC
CTAACTTTCAGCTCAGCTACTCCAATCCCTTCTTATCTACTCCCTCTATCTCATAATATAAGAGCGTTTTTGACATTACA
CTAGTGTCAAAAATATTCTTATTATGAGATGGAAGGAGTATTTTTGTTTCAGACAAGAAGATAACACTGTGGTCCTCCTT
CTCTTGGACATCCAGGAGACCTCAAATTGTCGGGCTATTCCCCAAACCCCGCAATTCCATACCACTAGGCTCATTGATTC
TCACGGGACCTGTCCCACACAGCCTCACATTCTTTGCTTTGCTCACCTGCTCATCTCCCTTCTGTCTCTTCCCCTGGCCT
CATGTCAACTCAGCATCCATGTCCCCGCCTCTGATGGCCTTTGGCCTATGGAGGTCCGGAGGATCTCGGCCCCCCGCCGG
CGGGAGGGACCTCGTTCTCGTTTTTGCTAGGTTGAACGTCTTGGTTGGGGCCGTGTGGCGGCGACGATGTTCCTCTGTAG
CAATAATGTCTCCCACGTCCTATCTCCGCCCCGATGGTGCGAATAGCGTTGTCGGAGAATGTGTGGGGGTGTGTCTCCGT
CTGATCTCATGGGATTCGATCGGTGCTGGTCTTTAATGGATCTCTTTGGATCCAGTTTTTGTCCGTCTTCGTTCGTGTGG
TTCCAGGTTTGATCTTTCCAATCTACAACTCTCTTCATCGGCGATGGTTGCTGCTCCGGTGTGTTGGTCCTTTTGGGCCT
TAGCACGACGATTTCCCGATTGTCTACTACAACAAGGTTTACCCGACTCCGATGATGGAGGGGCGATGACGGCGGCGCGC
CTTCGGCTCGCTCCAGTGCTTATAGTCGTCGCTAGGTGGTCCATAGACCTAGTTGTAATTTCTATTACCTCTTGTGTTCT
CTGTACTGCCATGATTGATGAATAGATTGGAAATTTCTCTTGCAAAAAAAAAACTCAGCATCCATGTCCATTGCTTCATG
CCACGTTTTGAACCAAGCTCCACACCCAAACTCTCCCTAGGAACCGTATTTTCTCTTGGAGTGCGTTTGTACACCCCCAC
CATCTTCTCATGCCCCCCTTCTCCAACAGCTCTTTCTCCCGAGCTCCACCACAACTTTCCCACGTATATAGAATATAGTA
CTATGTGGGTATGTAGAATTAGATTAGTCTATCTTTAAAATAAAATATGGACTTTATTCAACCAAAATAACAGACACATC
GTTTCTGAGGAAAGGTACAGTTTCGATCATAGGCTCCTCAAACCAATCAACTGCAGAAGAAAATCTAGCCAACCTAGCAA
TCTCGTGCGTAATCTTATTGGCTTCCCTATTACAATGTTAAACCAAGATATAGAAAAATCACATGCTAAAAAATAGCAAT
CATCAAAAATTGCCGCCGCCGCTCCGGCTGACCGTCCGCCATTATTCATAGTTTTGATAACCTCCAAATTATCAGAACTA
ATTACAAGGCGATTGCATCCCGCCCGTTGTGCTAGTGACAGACCAAATCTGAGAGTCCAAGCTTCCGTTGTTAGAACCTC
GACGCAATGATCTATTTTCCAAATACCGCCTGCAATAAAATTTTAAGAAAAAGGGTTTCCCCCCGCTTTAGATTATAAAG
CACTGTCCAATCGATACAACCAGCTTGCTGGGACCTCAGCACAAACAAGCCCAAAAGAAAAAGGAGAGAAAGAAAAAAGA
AACAAATGCCGACGCCGGCAGCTCAACTAAGCAAAGATGACTGACACCCGCTGCACCCACCGAAGAAGAACCACAGCCCG
CCAAGCACTCCGAAGCCTCACGTACCAAGCATCATCTTCAGGAAGAAATGCGACGATGACGCCGCCGCTGCCCAGACAAG
TCCTAGGGTTTCCCCCGGCACGCGGATAGCAATGGCGAAGGGGGTATCACCGACGCCCCTCAGGAGGGTCCGGCAACGCC
CACGGGCGTAGCCGCGTCGGTGACGAACGAGCCGCCAGAGGTTTCTCCCACCCCGAAGCCACCACCGCCACCTCAGACAA
TCGGAAGCGCACCGCCCAACAAGCCGCCCACCAGCCTATGCCACCACGGATATCGCACCATCTCCACCGTTTCACTGAGG
CCACCAACACGAGACCTGGAGGTGGGACGAGAAGACACCGGGCACGGAGGCAACCGCACCGCAGCCGACAGGAGGGAACA
ACCTCCACCGCCGCGCGGAGCCGACCGGACATGGCAATAGGGACTTGCCGGGCCACCACTAGCCCGGCCGGACCCCAACG
GGTCCGAACAGTCCCTGTAGCCACGCTGCAGCACGCCGGCTGCCGGAGCCACCACCACCGCAGCCACGGCCCCCTCGTCC
CACCACCAGGGAGCCACGCCGTCGCGCACCAGACCGCAGGCCCGCCCCAGCCCAGATGGGGCCCAAAAGGGCCCAGATCT
GGGCCGAGCGGGCGCCGCCGGCCAGCCGCCCACCGCGCCGCCCCGCAGCCAACAGCCACGCCGCCGCGTCGAGGGCACCC
GAGGCCCGCAGGACGCTGCCGCCGAGCCTCACCGCCGCTAGCCGAGCAGCACCGCCGCCAGGGAGGAAGGAGCCCCGACT
CTCCCTCCCGGCGCGCGGGGAAGGGACGTCCGCCGCCGCCGGCTCCACTCGGACACGGCGGAGGCCACAGCCGGCGGCGG
CGAAGGGGGATGGGGGAGGAGGAGGACCGAGACAAGGGGAGGGCAGGGGGCGCTCTGCCGCCTCGGGGGCCGGCAGGAGC
GCAGGGGGAGGGAGAGGGGGATGGGCAGAGGAAGGGGACCGGGGGGCGCGCGCGAGGCGGCCGGCGCCGGCGGGAGGGGG
CGAGGGAGGCCGCCGGCGGCAGGGCGGAACCCTAGCGCGGGTCGCGGGTCCGCCTGCAATAAAATTCCCTTTATCGTTCC
TTAGGACTGCCCCAACCGTATCTTTAAAAAGATCATGATCAAAAAAAGTATCAACATTAAGTTTCACATATCCTAAAAGG
GGACGAGTCCATCTACCCCTTTACATAGAAGCCTTTGGACCGGAGGCACCAACGTAATTAGCCGTAAGAGCTTGTATCCC
CATTGAAACCTATTTAGCATCTTGAATTTTCTTTTTGTGCACTAGTTTACGTCTTTTCCACCACAAATACCAAGACGCAA
TAGCAATCATCTTCCGAATATTTTGAGACCCCATAATAGATAAATCTTTTTCAGGCATGTGCAACAAAAATTTGAGAACT
GTCTCTTCAGCACGATCAACTTCACAAGCTTTAACAATAATCTCGTCTAAACCAAGCCTTCTCCAGACTTCCTTAGCCTT
CTAACACTAAAGCAACATATGCTTTGTGTCTTCTAAACCCGAAGCACAAGAGGGGCACAAAGGTGAAACTTTCATGTGTT
TATTGACGAGCGTAACACGATATGTGTCTATTTTCTTAGAATAAGATAGGTGTTTCTCCCTAGCCACTCGCATTTTAGGA
CGTCCATTGTTGGCAATATGGTTTAGGACATCCATTGCAGTCTGAATGG---TTGTCTCGTAAGGTTAGTCCTAAAATAG
CAGTGGCCACCAATCCATGTCAAAAATAGTACCTCCCATCCTCTGGTGGGTACATAAACACGTACGCGCCAACCCGCAAA
ACAGAAAGAAATTAGTGCAAACAAA----TCTCACATTAGTTCCGTTAACCGACCATGCACGCCGATCAGCTATTACCGG
CGGTCGTCGCCGCGGTGGCCATGGCTTGCCTGCTCATCGCCGGCCGGGCCGACGGCCTCGAGGAGTA---CGCCCCTTCT
GCCGCGGTGAGCCTGGAGATTGAGCCGCTGTCCATGAACCAGAACCCCGGGGAGTTCCTCCCGCGACCGGAGGTGATGTC
GCTGCCGACCGATCTGCTCTCAAGGCCAGACGTGGGTGGCGACGGTGAGGGGTACGTCCCGCAGGTGGAGGTTGTGCCAG
AGGTGGTGCTGCAGCCCGGCAACCCCCTCGCCGAGGCTCTCGGCGGTGGCTCGTA---TGCAGAGGAGCCATCGACAGAG
CCGGTCACGCTCATGGGCGAGCAGGGCGACATCTACCGCACCGGTGCGACACCGAGCCCAGCACAGCCGCCGGCGAAGCC
GTCTTCCCCTGGCCAGAAGAAGGC--------------------------------------TGGTTAAGAATACTAATC
CAAAGGGACGCTAGCCTATGATCCCGTTGCTCTTCCCTTAGCAAGTTTGTTTCCTGTTGCAGAAAAATAAGGGGCCATGC
ATGCAACGTGTGCATGTGCACGTCTTGGCCGAGAGATTGTTTTACTTACCTTAGTGG------TTTTGTTTGGATGTCAA
GAATCAGACGTGAGTTTTAAGAAAAGGAGCTTAAGAACCGGCGAACGTTCTACCGAATTGCTACAGATCAGAACACCTCA
ATA-----------------------------------------------------------------------------
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>chr5D_422
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---------------------AAACACAGTAAGTCCGCCACTCTGGCCATTACTTCTCTGAGCCATCACGTTAGGGAGGC
CTAACTTCCATCTCAGCTACTCCAATCCCTTCATATCTG-----------------------------------------
----------------------------------------TTTCTGTTTCCGACCAGAAGTGAACATCGTGGTCCTCCTT
---TTGGACATCCAGGAGACCTCGAATAGTCGGGCCATTCCCCAAACCTGGCAATTCCGTGCCACTAGTCTCATTGAGCC
CCACGGGGCTGATC---CACGGCCCCACATTCTTTGCTTTGGTCACCTGCTCATCTCCCTTCTGTCTCTTCCCCAGCTCT
CATGTCAACTCAGCATCCATGTCCATTGC---------------------------------------------------
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-------------------------------TTTCTTAGAATAAGATAGACGTTTCTCCCTAGCCACTCTCATTTTAGGA
CGTCCATTGTTGGCAATATGGTTTAGGACATTCATTGCAGTTTGAATGGCGGTTGTCTCGTATGGTCAGTCCGAAAATAG
CAGTGGCCATCAATCCATGCCAAAAATAGTACCTCCCGTCCTCTGGTGGGTACATAAACACGTACGCGCCAACCAGCCAA
AGACAAGGAAATTAGCGC----AAACAAATCTCATCTTAGTTCCGTTAACCGACCATGCACGCCGACCAGCTATTACCGG
CGGTCGTCGCCGCCGTGGCCATGGCTTGCCTGCTCATCGCCGGCCGGGCCGACGGCCTCGAGGAGTACGGCGCTCCTTCT
GCCGCGGTGAGCCTGGAGATGGAGCCGCTGTCCATGAGCCAGAACCCCGAGCAGTTCCTCCCGCGACCGGAGGTGATGCC
GCTGCCGACCGATCTGCTCTCAAGGCAGGACGCGGGTGGCGACGGTGAGGGGTACGTCCCGCAGGTGGAGGTCGTGCCAG
AGGTGGTGGTTGAGCCGGGCGACCCCCTCGCCGAGGCTCTCGGCGGCGGCTCGTA---CGCAGAGGAGCCAACGACAGAG
CCGGTCACGCTCATGGGCGAGCAGGGCGACTACTACCGCACCGGTGCGACACCGAGCCCAGCACAGCCGCCGGCGAAGCC
GTATTCCCCTGGTCAGAAGAAGGC--------------------------------------TGGTTAAGAATACTAATC
CAAAGGGACGCTAGCCTATGATCCCGTTGCTCTTCCCTTAGCAACTTTGTTTCCTGTTGCAGAAAAATAAGGGGCCATGC
ATGCAACGTGTGCATGTGCACGTCTTGGCCGAGAGATTGTTTTACTTACCTTAGTGG------TTTTGTTTGGATGTCAA
GAATCAGACGTTAGTTTTAAGAAAAGGAGATTAAGAATCGGCGAACGTTCGACCGAATTGCTACAGATCAGAACACCTCA
ATAGTTGTTTATTTCCTCCTT-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------S-S-------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------S--------------------------S--------------S-------
-------------------------------S----SS------------------------------------------
--------------------------------------------------S----------S------------------
-----------------------------S---S--------------S-S------S-----------S----------
---------------------------------------------------------S----S-----------------
------S-------------------------------------------------------------------------
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-----------------------S---------------S---------------------S--------S---------
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S-------------------------------------------------------------------------------
--------------------S-------------------------------S------------------------S--
-S-----------------------------------------------------S------------------------
--------------------------------------------------S-----------------------------
-------------------------------------S-----------------SSS-------S-----S----S---
---------S--SSS------------------------S-----SS----------S----------------------
-----------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
---------S---------S--------------------------------------S-----------S---S-----
---S--------------------------------SS-------------------SSSSSS----S----S-------
--SS-----SS----------------S------S---------------SS-----------S------------S---
------S-------SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_691
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-------------------------------GGACCATTCCCCAAACCACA-----------------------------
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>reverse_5403
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------------------------------------------GAGGAAATTTGCGGATCGGC------------------
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------
