>input_sequence_79878
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--------------------------------------ATGTCGGCGGCGGCGGCGAGCAGGGGCGTGCGCGCGCTGGCC
ATGCTGGGGCGGTGCGTGCGGGCGCCGTTCCGCGCGCTGGTCCGCGCACGCGACCTGTACGTGAGCCGGATGGCGGCCTG
CGCGGCGGGACGCGGGCCGGTGGGCATAGCGGCCGTGTCCCGGAGCCGGAGCCACGGGTTCCACTTCCACCGCTCGGCGG
GCGGCGATGCCGACGACGCCGACGTGCGTGAGCTCGTCAGGGCCGCCTCGCGCGCCGGGCCGCCCAG-------------
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--GCCCGCCGGCGTCGGGCCGCGCAGCCAAAGCGTGGCCATCGGGAGGATCGACGAGGACCGCCCGTGCGAGTTCGGGCT
TGACGACGGCGCCGCGGCGCGGGCGCTGGGCCCGAGGAGCAGGAGCTGCGCCGTCGGGTCCACGGCCAGGACGGCGCGCA
GGCTCGGCGCTGTCGCCGCCGCTTAA------------------------------------------------------
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>chr4D_1_TraesCS4D01G060300
TTGCTAGGTGGTCTAT-GATTCTGGATGTAA-TTTTTACTTCTTATGTTCTTTGTACTTCCTGTTGACAAACGATGTATA
GATCGAAAGTTTTTTCCG--AAAAAAAATCATCTCCCTGTGTGTCTGAACTACCATTGA-AACCTCCCTACAGGCAACAT
GCATTAGTATATTCTCAAGTGAATTTTAAAATC-TTTTTTTCCGGCCGAAATCTTGTTGCATTTGCTTTTTTGTT---GT
TGCGGGTAATGTTGCATTTTCTTGTGGATTGTTAAAACTCGTATCTTAAGAGTACTTTTATTTTCTTGTGGAATGTTAAA
CTTCTCACATGATTTGAATCTTAATGAATATATTTATACACTCTATGCAGTTTTTAGAAATCAAATCTTCTTCTTTTTTG
CGAATAAAAAAAACAAATCTTCAATTCCACATCAACACGCGGGGCACCATCTAATAAAAATCAGTGAGTGCAAC----CA
CACCATGAACTTGGAT-TGCTTCCGGCCAACTCTAGTCACATCATCTCGAACGCAATA----------------------
-----ACATTAGAATAACCGACCAAGTCTTTTGC-CAAAACTTTTCAAATGATCTAGTTGCACGTATGTATGATACGCCT
CAAGTTCATCTTGACTTTCAGTAGATGAGCTAGTTGCACGTATGTATGATACGCCTTAAGTTCATCTTGACTTTCAGTAG
ATGAGCATTCATCGTTGATGAGACTCATCAACACGACGTCCAGATCGACGTGCCAGACAGAGCACGTCCGATTTGAACCG
GCCAAACCCAACCGGAG------------------CCCCGCACCGAAACGGATGACCGAGCGGGTCAGACCTCCCGTGCT
CCGCAACCAGCCATCCACCCACGACG-----CGTCACGTCACTTCGCCCAGAACGAGTCGCCGACCCGTTCATATATATA
G-----CCCCAGCG------ACAAGCACAGGCACTGTAATTTGCACGACGTCGCGTAGCCAGTGGCGTCGTCTCCCAGGC
GCTAAGAAACAGCAAAGGCGTTGCCTTCGATCAGA--CATGTCGGCGGCGGCGGCGAGCAGGGGCGTGCGCGCGCTGGCC
ATGCTGGGGCGGTGCGTGCGGGCGCCGTTCCGCGCGCTGGTCCGCGCACGCGACCTGTACGTGAGCCGGATGGCGGCCTG
CGCGGCGGGACGCGGGCCGGTGGGCATAGCGGCCGTGTCCCGGAGCCGGAGCCACGGGTTCCACTTCCACCGCTCGGCGG
GCGGCGATGCCGACGACGCCGACGTGCGTGAGCTCGTCAGGGCCGCCTCGCGCGCCGGGCCGCCCAG-------------
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--GCCCGCCGGCGTCGGGCCGCGCAGCCAAAGCGTGGCCATCGGGAGGATCGACGAGGACCGCCCGTGCGAGTTCGGGCT
TGACGACGGCGCCGCGGCGCGGGCGCTGGGCCCGAGGAGCAGGAGCTGCGCCGTCGGGTCCACGGCCAGGACGGCGCGCA
GGCTCGGCGCTGTCGCCGCCGCTTAACGCGCGCCGACGGCATAGATGCCGGTGTAT--------TCACTAGCTAGAAACA
--------CGCGTAGGTGACAGTGTGCTTGAATA----------------------------------------------
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----------------------------------------TAGTTGG--------CGGCCTGATGTGTCCGATTC---TG
AGTGCTACGCTCACTTGCTGCGTGTCAA-GTAGTGGGAAACTATGAAGGTTTTGTTCTTTTCCCGGACTT-GGGGTTATC
AATAATATTTCAAGGTTGTCGGCTTTCTTGACCGTCGCCATTAAAAAACGGGCTGCGCCAACCTTTGCCGGCCGGACGGA
----CATGCTCGGCGACTCTCTTTTCTCTCGGACTCCAGGC----GATGGATCCGGTTTCCTCCATTCAACGA-------
---------CGGTTTGATGGC-----------------------------------------------------------
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--------GGCTGATTAGCCTTCTTTTCCTTAGCGCCAAAGTTTGTCTTTTTTTTTGGGTGCGCTCGCGTCAGGCATCTC
CCTAAATGGGCCAGCCCAGTGAACGGGAGGCCACTGTCTTGTTTTTTCTTCTGTTTTTCTCACTTTTTTGTTTTTTTGCT
ATTTTAATTTTTTTATACTTCCAAATATTCCAAATATACATATTAAAGAAAAATTATAAAATATTTGAATTACTGTTAAC
CAAGCATTTGAAAAACGTTTAA----------------------------------------------------------
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----GTGTGTATATAGAAAATGTTTCTCATGT------------------------------------------------
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--------------------------------------ATACAAAAATATACAATTTGTACAAAAAAAGTTGATCATGTA
TTTAAAAAATGTTAATAAAGCATTTGAAGAAAACCAGGTATTTGAATAATGTAAATCAAACATTTAAAAAATGTTAAATG
TGTGTAGAAAAATGTTTGTCATGTATATGAAAAATATATACAAAAAAATTCAATGTGTATGCAAAATGGTTTATCATGTA
TTTAAAAAAGTTAATCATGTATAAAATGTTCCTTATGTATACAA------------------------------------
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--------------------------------------------------------ACAATGTACAACATACAGTAAAAA
AATAGACATCAAAAC-----------------------------------------------------------------
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-ATATATTTTTAAAAAGCTGACTATGTGTTTAAAAATTGTTAAACATGTATATAAATATGTTCCTGATGTGTACAAAAAA
TGTGTGTGAAAAAAAATG--------------------------------------------------------------
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>chr4B_1
TTGCTAGGTGGGCTTAGGGCTATGGATGTAC-TTTTTACTTCTTATGTTCTTTGTACTTCCT--TGACAGATGATGAATA
GATCGAAAGTTTTCCCCC--CAAAAAACCC--ATCTCC---TGTGTGAACTACGATTGA-AACCTCCCTACAGGCAACAT
GCATTAGTATATTCTCAAGTGAATTTTAAATCTA-TTTTTTGCGGCCGAGATCTTGTTGCATTTGCTTTTTTGTTGTTGT
TGCGGGTAATGTTGCATTTTCTTGTGGAATGCTAAAACACTTATCTTAAGATTACTTTTATTTTCTTGTGGAATGTTAAA
CTTCTCACATGATTTGAATCTTAATGAATATATTTATACATTCTATGCAGTTTTTCAAAATCAAGTCTTCTTCTTTTTTG
CGAATAAAGAAATCGAATCTTCAATTCCGCATCAACACGCGGGGCACCATCTAGTAAAAATCAGTGAGTGCAACCATGCA
CACCATGAACTTGGATTTGCTTCCGGCCAACTCTAATCACAGCATCTCGCACGCAATAACATTAAAGG------------
-------------ATAACCGACCAAGTCTTTTCTTCAAAACTTTTCAAATGATCTAGC----------------------
----------------------------------AGCACGTATGTATGATACGCCTTAAGTTCATCGTGACTTTCAGTAG
ATGAGCATCCATCGTTGCTGC-ACTCATCAACACGACGTCCACATAGACGTGCCAGACAGAGCACGTCCGATTTGAACCG
GCCAAACCCAACCGGAGTCCCGCAGCAGAACAGATGAGCAAGCGAGT------------GCGAGTCAGACCTCCCGTGCT
CCGCAACCAGCCCTCCACCCACGACCCGTCACGTCACTTCACTTCGCCCAGAACGAGTCGCCGGCCC-------------
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>chr4B_3
--GCTAGGTGGTCTAC-GGTTCTGGATATAG-TTTTTACTTCTTGTGTTCTTTGTATTGCCT--TGATAGATGA--TAAA
TATCGAAAGCTTTTCCCGCAAAAAAGAAACCTATCTCC---TGTGTGAACTTCCACTGAGAACCTCCCACCAGGCAACAT
GCATTAGTATATTCTTAAGTGGATTTCAAATCTTTTTTTTTGCGGCCAGAATATTGTTGCATTTACTTGTGTTTT---TT
TGCGGGTAATGTTGCATTTACTTGTGGAATCTTAAAACTCTTATCTTAAGATTACTTTTTATTTGATCTGCTGG----AA
CTTCTCACATGATTTGAATCTTAATGAATATATCTATACATTCTATGCAGTTTTTAGAAATCAAATCTTCTTCTTTTTTG
CGAATAAAGAAATCGAATCTTCAATTCCGCGTCAACACGTGGGGCACCATCCAGTAAAAGTCAGTGAGTGCAAC----CA
CACCATGAGCTTGGATTTGCTTCCGGCCAACTCTAATCACAGCATCTCGAACGCAATAACATTAAAATAACCGATATTAA
AAAAAACATTAAAATAACCGACCAAGTCTTTTGTTCAAAACTTTTCAAATGATC--------------------------
--------------------------------GTAGCACGTATGTATGACACGCCTTAAGTTCTCGTTGACTTTCAGTAG
ATGAGCATTCATCGTTGCTGC-ACTCATCAACGCGACGTCCACATAGACGTGCCAGACAAAGCACGTCCGATTTGAACCG
GCCAAACCCAACCGGAGTCCCGCAGCAGAACAGATGAGCAAGCGAGT------------GCGAGTCAGACCTCCCGTGCT
CCGCAACCAGCCCTCCACCTACGACCCGTCACGTCACTTGA-----CCCAGAACGAGTCGCCGATCCCTTC--ATATATA
G-----CCCCAGCG------ACAAGCACAAACACTGCAATTTGTACGCCGTCT---------------------CC--CC
GCTAACAAACGGCAAAGGCGTTGCCTTCGATCAGA--TATGT------CGGCGGCGAGCAGGGGCGTGCGCGCGCTGGCC
ATGCTGGGGCGGTGCGTGCGGGCGC------------TGGTCCGCGCGTGCGACCTCTACGTGAGCCGGATGGCGGCCTG
CGCGGCGGGACGCGGGCCGGTGGGCATAGCGGCCGTGTCCCGGAGCCGGAGCCACGGGTTCCACTTCCACCACTCGGCGG
GCGGCGACGGCGCCGACGCCGACGTGCGTGAGCTCATAAGGGCCGCCTCGCGCGCCGGGCTGCCCAG-------------
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--GCCCGCCGGCGTCGGGCCGCGGAGCCAGAGCGTGGCCATCGGGAGGATCGACGAGGACCGCCCCTGCGAGTTCGGGCT
CGACGACGGCGCCGCGGCACATGCGCTGGGCCCAAGGAGCAGGAGCTGCGCCGTCGGGTCCACGGCCAAGACGCCGCGCA
GGCTCGGCGCTGTCGCGACCGCTTAACGCTCGCCGACGGCACGGATGGCGGTCCGACCGTCGACTCACTAGCTAGAAATG
TGCGGAGGCGCGTAGGTGACAGTGTGCTTGAATA----------------------------------------------
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----------------------------------------TACTAGTTGCCGGTTCGGACTGATGCGTCCGATTAATTTG
AGTGCTACGCTCACTTGCTGCGTGTCAAAGTAGTGAAAAACTATGGAGTTTTTGTTCTTTTCCCGGCCTCAGGGACTATT
CATAATATTTCAAAGCTGTCAGCTTCCTTGACCGTCGCCATTAAAGAACGGCATGCCCCAACCA-TGCCGGCCGGGTGGA
----CGTGCTCAGCGACTCTCTTTTCTCTCGGACTCGAGGCGATCGATGTATCCGGTTTTCTTCATTCAACAACGGAATG
TTTTGTGTTCGGTTAGATGGC-----------------------------------------------------------
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--------GGCTGATTTGTCTTCTTTTCGAAATCAGTATTTTTTACAAAAATCACTCCCACCTCATCAATCAGGTTGAGC
GTCACTTCGCG--------------------------------------------------ACTTTCTTTTTTCATAGAT
TTGTTTATTC----------------------------------------------------------------------
-----------AAAACGTTTAG-CTCATAAACCATGTGTCTAAATCTCGAACCGTTTTTATCGTTGGATTCCTCGCGCCG
ACGCATTTGAGGCGCAAATTTGGGCCGCAAATGAGTCGGCGCGGACGCCAGACGGACACGAATTGAGTTTGGGTCGGCGC
GTTGGGTCGCCATTTTTGTCCGCGCCGACCCAAACGGACGCGGGTGGACGAAATGGATCACCCCATTGGAGTTGCTCTAA
GCTTGGTTGAAACAGCGCCAGACTCATGGCCGGAGTGGCCGTGTGATGCAGGTACGTGGGCG--TCGAGGAGGAGACAGG
GGCGGAGCTCTTCTACTATTTCGTCAAGTCAGAGAGTAGCCCCGCACGGACCCGGTGCTCCTGTGGCTCACC--------
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---------------------------------------------------------------------------GGCGG
TCCCTGCTGCTCGGTCATCATGGGCCTGGCCTTTGAAATTGGTCAGTTCACCAATTCGGTTTCCACTTTTTGACATACAG
TACGTACTAGTTGCTGCTCGTATTCATCTATCCGCCGTTGTTTTGCACCGTAGGTCCTCTGAATTTTGTGTTGGCACCGT
ATAGCGGCGGTTTGCCAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
ATAGACGATTTTTATGAAAGTCTTCAATACATGAAAGTTTCGAAGACCAATAATAGAAACAACACTATTTGAATGCAGCG
GAAGGTAGACTACACTAGACAAGCCATAGTCAAGTATTCAATGAAGTGAAAGCACAAAGACTATTAGCAGCTAGGTAGTA
AGGATCAGAAAGGAAGATAGTGCGAAGCCAATCAGGATACATGCTTACAACAATGGAGACAGGCTTAACACTGAAGGTCT
GATAACTGACTGAGAAAAATAGACTAATGACTGAAATGATACTAAAATATAAAAC-------------------------
--------------------------------------------AATGAATGTTTGAAGACATGCTTAACAATGGAGACA
TGCTTACAACAACGGAGGCATGCTTAACACTGAAGGTCTGATAACTGACTGAG---------------------------
----AAAAATAGACTAATGACTGAAATGATACTAAAATATAAAACAGTGAATGTTTGAAGACATGCTTAACAATGGAGAC
ATGCTTACAACAACGGAGACATGCTTAACACTGAAGGTCTGATAACTGACTGAGCACTTATACTAAAAATTGAATACTAA
CACTGTCTTTTTTTTGCGGGAAATCTTCCGATCTATTCATCTTCAATCATGGCAGTACAACGAATACCAAAAATAATAAA
AATTACATCTAGATTCGTAGACCACCTAGCGACGACTACAAGCACTGAAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCC
CTCCATCGTCAGAGTCGGGCACAACTTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCACATATGACCAGCGC
ACCAGAACAGCAATCGCCGCAGATGAAGAATAACATAGATCGGAAGGATCCAATCCGAAGACACACAAACGTAGACAAAC
ACCAACGAGATCCGAGCAAATCCACCAAAGATAGATCCGCCGGAGACACACCTTCACACGTCCACCGGAATACATCAGCG
ACAAATATAGATTAACCGAATCATATGGTTAATCCTGTCGACTGAGACTACACTAATTCTCGGTCGACTGAATTTTAGCA
GCCCCATATTAAAATACTGGAGTTGCATTACAGGAGTTGAAAAGTCGGACGTGTCATCTTGACTTTCACTAGATGAGCAT
TCATCGTGGCTGGACTCAT-------------------------------------------------------------
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-------------------------------------------------------CAACGCGACGTCCACATAGACGTGC
CAGACAGAGCACGTCCGATTTGAACCGGCTAAACCCAACCGGAGTCCCGCAGCAGAAGAGATGAGCAAGCGAGTGCGAGT
CAGACCTCCCGTGCTCCGCAACCAGCCCTCCACCTACGACCCGTCACGTCACTTGACCCAGAACGAGTCGCCGATCCATT
CATATATAGCCCCGGCGACAAGCACAAGCACAAGCACTGCGATTTGTACGCCGTCTCCAGGCGCTATCAAACGGCAAAGG
CGTTGCCTTCGATCAGATATGTCGGCGGCGAGCAGGGGCGTGCGCGCTGGCCATCCTGGGGCGGTGCGTTCGGGCGCTGT
TCCGCGCGCTGGTCC-----------------------------------------------------------------
-----------------------------------------------------------GCGCGCGCGACCTCTACGTGA
GCCGGATGGCGGCCTGCGCGGCGGGACACGGGCCGGTGGGCATAGCGGCCGTGTCCCGGAGCCGGAGCCACGGGTTCCAC
TTCCACCACTCGGCGGGCGGCGACGGC-----------------------------------------------------
-----------------------------------------------------------------GACGACGCCGACGTG
CGTGAGCTCGTCAGGGCCGCCTCGCGCGCCGGGCCGCCCAGGCC------------------------------------
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>chr4B_3
--GCTAGGTGGTCTAC-GGTTCTGGATGTAATTTTTTACTTCTTTTGTTCTTTGTACTTCCT--TGACAGATGCTGAATA
GATCGAAAGTTTTTTCCG--AAAAAAAACCCCATCTCC---CGTGTGAACTACCATTAA-AACCTCCCTGCAGGCAACAT
GCATTAGTATATTCTCAAGTGAATTTTAAATCTA-TTTTTTGCGGCCGAAATCTTGTTGCATTTGCTTTTTTGTTGTTGT
TGCGGGTAATGTTGCATTTTCTTGTGGAATGCTAAAACTCTTATCTTAAGATTACTTTTATTTTCTTGTGGAATGCTAAA
CTTCTCACATGATTTGAATCTTAATGAATAGATTTACACATTCTATGTAGTTTTTAGAAATCAAATATTCTTCTGTTTTG
CGAATAAAGAAATCGAATCTTCAATTCCGCATCAACACGCGGGGCACCATCTAGTACAAATCAGTGAGTGCAAC----CA
CACCATGAACTTGGATTTGCTTCCGGCCAACTCTAATCACAGCATCTCGAACCCAATAACATTAAAATAACCGA------
---------------------CCAAGTCTTTTGTTCAAACCTTTTCAAATGATC--------------------------
--------------------------------GTAGCACGTATGTATGACACGCCTTAAGTTCTCGTTGACTTTCAGTAG
ATGAGCATTCATCGTTGCTGC-ACTCATCAACGCGACGTCCACATAGACATGCCAGACAGAGCACGTCCGATTTGAACCG
GCCATACCCAACCG------------------GAGCCCCGCACCGAAACGGATGACCAAGCGAGTCAGACCTTCCGTGCT
CCGCAACCAGCCCTCCACCTACGACGCCTCACGTCACTTGA-----CACAGAACGAGTCGCCGATCCCTTC--ATATATA
G-----CCCCAACGACAAGCACAAGCACAAGCACTACAATTTGTACGCCGTCT---------------------CCAGCC
GCTAACAAACGGCAAAGGCGTCGCCTTCGATCAGA--TATGT------CGGCGGCGAGCAGGGGCGTGCGCGCGCTGGCC
ATGCTGGGGCGGTGCGTGCGGGCGCCGTTCCGCGCGCTGGTCCGCGCGCGCGACCTCTACGTGAGCCGGATGGCGGCCTG
CGCGGCGGGACGCGGGCCGGTGGGCATAGCGGCCGTGTCCCGGAGCCGGAGCCACGGGTTCCACTTCCACCACTCGGCGG
GCGGCGACGGCGCCGAGGCCGACGTGCGTGAGCTCATAAGGGCCGCCTCGCACGCCGGGCCGCCCAG-------------
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--CCCCGCCGGCGTCGGGCCGCGGAGCCAGAGCGTGGCCATCGGGAGGATCGACGAGGACCGCCCCTGCGAGTTCGGGCT
CGACGACGGTGCCGCGGCGCATGCGCTGGGCCCAAGGAGCAGGAGCTGCGCCGTCGGGTCCACGGCCAAGATGCCGCGCA
GGCTCGGCGCTGTCGCGACCGCTTAACGCTCGCCGACGGCACGGATGGCGGTCCGACCGTCGACTCACTAGCTAGAAATG
TGCGGAGGCGCGTAGGTGACAGTGTGCTTGAATGTACTG-----------------------------------------
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----------------------------------------TACTAGTTGCCGGTCCGGACTGATGCGTCCGATTAATTTG
AGTGCTACGCTCACTTGCTGCGTGTCAAAGTAGTGAAAAACTATGGAGTTTTTGTTCTTTTTCCGGCCTCAGGGACTATT
CATAATATTTCAAAGCTGTCAGCTTCCTTGACCGTCGCCATTAAAGAACGGCATGCCCCAACCA-TGCCGGCCGGGTGGA
----CGTGCTCAGCGACTCTCTTTTCTCTCGGACTCGAGGCGATCGATGTATCCGGTTTTCTTCATTCAACAACGGAATG
TTTCGTGTTCGGTTAGATGGC-----------------------------------------------------------
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--------GGCTGATTTGTCTTCTTTTCGAAATCAGTACTTTTTGCAAAAATCACTCCCACCTCATT----AGGTTGTGC
GTCATTTCGCG--------------------------------------------------ACTTCC-TTTTTCATAGAC
TTGTTTATTC----------------------------------------------------------------------
-----------AAAACGTTTTAACTCATAAACCATGCAACTAAATCTCGAACCGTTTCAACCGTTGGATTCCTCGCATCG
AAATCTTTCAAACTAGATCTCAGGTGTTCTTTTCCCGGCCTTGGGGTTGGATTACTAATAATATTTCAAAGTTGTTGGTT
TTCTTGACCGTCACCATTAAAGAATAGACTGCGCCAACCTTACCGGCTGGGCGGACATGCATGCTCAGCGACTCTCTTGT
CTCTCGGACTCCAGTCGACTATACTTCTTTCTCTATTCAACGATGGAGGAGGAGGAGGAAGGGCTCGGGGAGGAGGAAGG
GGCTTGGAGACGACACCGTGGCCATGCCATGCGAAGGGCCGGTCGACCCGCTTCAATGCGGCGCAGTGACCGGAGTTGGT
TTCTCAGGACGCGGCGTCCGCATTGAAGCGGCGACGCCCGAGAGGTCACGGCTGTCACGGCTGTCACCGCTGCCCTCACG
TCGCACAACATTAATGCCGACCATTGCATGCTCTAGGCCAACATGAATGTGACGCGGTAACACTAGTAGAAAACAGGGCT
TTGGTCCAAGCCGGGTCAGCCCATTAGTCCCGGTTCAATCACGAACCGGGACCCATGGGGGCATAGGTCCTGGTTCGTGA
GGACAGGGGGACAGCCGGGCCTTGTGGGGCATTGGTCCCCGTTTGTCTGAGCCCTTTCGTCCCTGTTCCAGACACGAACA
GGGACCAATGGGCCTCGTTCCTGGCCCACGACCATTGGTCCAGGTTCGTGGCTGCAACCGGGACAAAAGGGTGTCCTTTA
GTCCCGGTTTCAGCCATAAACCAGGACCAATGAGATGCCTATATATACTCCCTCGCCCGCGAGCAGAGCACTCCACTGCT
CTGTTTTTTTGGTTGGCCGTTGGAGAGCTTTGTGGTGCTCTAGTTCACCTCCTATGCACATGAGGTGTTCGATGAAATGC
CCGAGCCACACATAAGCTTTCTCTTCTCGAAACTCCTTGTCCAAACTCCATTTTCCTCAAGATTTGTCTAGGTTTGGCGG
TCCGTCCTGTCCCGTCCTCGTCCTCACCTCCGTTGATCGCCTGTGCCGATCTCGTCGTCAGCACCACCGTGGTGAGCCTC
TTGATCTTATCTTCTTTCTAAAAGAAAAAAGTTCTTACTTGTATGATTTAGATAGATACTTGTGTAGTTTTCTTACTTAT
TATTGTTTGTTATTATATGGTGCGATGGTTTTGGTAACCGCCTCCGTTGGCTCTCCTTCTGTCTATGATTCAGATGTCGT
GTGTGTATATATATATAAAATCTTTTATAACTATTAGTTTCATTTAGTGTTTATGACAATTATGCCGAACAACATGACAT
AGGTTTTTTTATCTAGGAGGTATGTGAAACGGAAATTTTAACCGACCATATTGTCGAGAGGTTAAATTTAGTTAAAGA--
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------------------------------------------------AGAAAAC-------------------------
--------------------------------------------AATTACTTGAAGGAAACATTGAAAAAAATTGAGGAG
GAGAAG--------------------------------------------------------------------------
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----------AAAATATTGGAGTTGCATGTTGCGGATGTCGTCGATGATCACAAGATCAAGATGGATGCAATGCATTTTG
AGATTAGAAAGATTAGAAAATATGCCATTCATATTGATGCTTGGTATCATTATGCCGTTGGATCAATTGTTACCTTGGTT
GCGGTTATAATCGCATTTGTTGTTGCATTGAAATGTTTTGCATTGTTTCAATGTATGATTTAATTAGATGCTCTGAAGAG
CTATATGTTGTTCAATGAGAACTTTTTATGTACTTTGGTTTTAATGTGATGATGAACTTCTATTAATTAGATGCCTCACT
GCTTCTGCTGCTCTCGCCCTC--------------------------------------------------GGCCTCACC
TTCCCACGGTGGTCACCCATCTACATGGATTCCATTGCCCTCTGCCCTTCTACCTCGAAACCGGGTAAGCAGCACTGCCT
GACAGCTAACACCATCTCCAGCCGCGCCCACAATAGACCCCCCCCCCCAATCCATTTTTTTTAGCGCCGGCGGCCGAAAA
TCGTCCTAGTCGCGCCCCCAGGATCTCATTTAGCGCCAGTTTGGGCCGAAATAACAGTCGGCGAACCCGAGCCGTACCCA
AGCATCTGGGGGCGCCCGGGGGTGCCGACAGAAGCGAAAAGGGGCGTAGGGCCGCTCTGTCGGTGAGAGGAGGCCCTTTT
CCCACCGTTTCCTCCTGCTTTCCCCCTTGGCTTCCCTCTCACTCTTCATTCCTCCCGCCAATTTCCTCCTCCTCCCCTCC
CAGCCGGCCGTCATGCTGCCGAAGAAGTACGTGCCCCCTGTGCCGTGACAGATGCCACCGCTTCCGCCACCTAGCCGAAA
CAGAGGAAGCAGAGGGCGCCCCCGTCCAAGCCCCCGGCCATGTCTAACGTTGACTGGAGGGCGGAAGTTAACCGCCGGGA
GGCTGTTATCACCGACTGGCGAAATAGGGCGAATGCCAAGAAGGCCCGAGA-----------------------------
-------------------------CAGGGCGGCGCTCGCGGCGGTGGCGGAGCAGGCGGAGCGCTCTGCCGAACAAACC
GAGGCAGCTCGCGCGGGGATGATGAATTCGCCCGGCGGCCACGGCCTGTACACGTCCTGGAGCCAGCAAAGCGCGTCGGG
TCTCCGGCCGGCTTCTCGTCGTCGCCGCAACCCTGGGGCTGCATACCCGTCGTGGCCGTCGGGCGAATTCGTCATCCCCG
CGCGAGCCGCCTCGGTTTGTTCGGCCGAGCGCTCCGCCTGCTCCGCCATGGATCCGCCTGCGCGCGCAACCTCTACGTGA
GCCAGATGGCGGCCTGCGCGGCGGGGCGCGAGCCGGTGGGCATAGCGGCCGTGTCCCGGAGCCGGAGCCACAGGTTCCAC
TTCCACTACTCGGCGGGCGT-GACGGC-----------------------------------------------------
-----------------------------------------------------------------GATGACGCCGACGTG
CGTGAGCTCGTCAGGACCGCCTCGCGCGCCGGTCCGCCCAGGCCCGCCGGCATCGG------------------------
---------------------------------------GCCGCGGAGCCAGAGCGTGGCCATTGGGAGGATCGACGAGG
ACCGGCCATGCGAGTTCGGGCTCGACGATGACGCCGCGACGCTGGGCCCAAAAAGCAGGAGCTGCGTCGTCGGGTCCACG
GCGAGGCCGGCACGCAGGCTCGGCGCTGTCGTGGCCGCTTAACGCGCGCCGACGGCACAGATGCGGGTGTATTCACTAGC
TAGAAACACGCG--TAGGTGACAGCGTGCTTGAATATAGC----------------------------------------
----CTGCGTGTCAAGTAGTAGTGGGAAACTATGGAGGTTTTGTTCTTTTCCCGGCCTTGGGGTTTATCAATAATATTTC
AAGCTGTCGGCTTTCTTGACCGTCGCCATTAAAGAACGGGCTGCGCCAACCTTGCCGGCCGGGCGGACATGCTCAGCGAC
ACTCTTTCAAGTCGGACTCCAGGC
>chr4A_716
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-------------------------------------GTCCATATCGACGCGCGC--CAGAGCACGTCCAATTTGAACCG
GCCAAATCCAAACG------------------GATGACCAAGTGAGT------------GCGAGTCAGACCTCCCGTGCT
CTG----CAGCCCTCCACCTACGACGCGTCACGTCACTTCGCTG-----AGAACGAGTCGCCTACCAGCTCATATATAGC
CCCAGCCCCCAGCG------ACAAGCACGAGCACTGCAATTTGCCCGACGTCGCGTAGCCAGTGGCGTCGTCTCCCGGGC
GCTAAGAAACGGC-AAGGCGTTGCCATCGATCAGAGACATGTCGGCGGCGGCGGCGAGCAAGGGCGTGCGCGCGCTGGCC
GTCCTGGTCCGCGT----------------------------------CGCGACCTCTACGCCAGCCGGATGGCGGCCTG
CGCGGCGGGGCGCGGGCCGGTGGGCATAGCGGCCGTGTCCCGGAGCCGGAGCCAGGGGTTCCACTTCCACCAATTGGCCG
GCG----------------------------GCTCGTCAGGGCCGCCTCGCGCGCCGGGCCGCCCAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCC
AGGCCAGCCGGCGTCGGGACGCGGAGCCAGAGCGTGGCCATCGGGAGGATCGACGAGGACCGGCCGTGCGAGTTCGGGCT
CGACGACGGCGGCGCGGCGCATGCGCTGGGCCCAAGGAGCAGGAGCTGCGCCGTCGGGTCCACGGCCAGCACGGCGCGCA
GGCCCGGCGCTGTCGCGGCCGCTTAACACGCGCCGACGGCATAGATGCCGGTGT--------------------------
-------------------------GCTTGAATATACTCCCTCCGTTTTTTTAGTCTGCATATAAGATTTGATCAAAGTC
AAGCTTTGTAAAGTTTGACCAACTTTGTATGAAAAAGTATCAATATCTACAATATTAAATATATATGGTATGAAAATTAA
TTTCATGATGCATCTAAAAAAATTAATTTTATATTGTGAATCTTGATATTTTTTTCTATAAACTTAGTCAAAGTTTGACT
TTGACCAAATCTTACCTGCGGACTAAAAAAACGGAGGAAGTAGTTGG--------CGGCCTGATGCGTCCGATTC---TG
AGTGCTACGCTCACTTGCTGCGTGTCAA-GTAGTGTGAAATTATGAAGTTTTTGTTCTTTTCCCGGCCTTGGGGATTATC
AATAATATTTCAAGGTTGTCGGCTTTCTTGACCGTCGCCATTAAAGAACGGGCTGCACCAACCTTTGTCGGCCGGGCGGA
CATGCATGCTCGGCGACTCTTTTTTCTCTCGGACTCCAGGCCAA----GTATCCGTTTTTCTCCATTCAACGACGGTGTG
TTTTTGTTCGGCTGGACAGCGGCTGATCAGCATTCTTTTGCTTTTTGAAACGGCATGAAAAATCTGGCATTTTTCATGAC
AATTTATATGGGTGCGATGATGATAAATTTAGTTTAAAAGTTAATTTATACGGATTTGTCATGTTCATCAACCAAACTTG
ATATCTTCAGCGAACATAATTTGGCATAAAAATGTTCGATTTTTCATGCCTCTGACGTTCGCCGGATATTCTGATCCTAG
TTTTTTTAGGCGCATTAGCCTTCTTTTGCTTAGTGCTAATGTTTGTCGGGTAGATGAGACCATAATTTACCCAAAGCGGC
GCAAGCTGCAAGGCCCAACTTACACGAATACCGCTGATTGTCTTCTTAAGTGAGAGTTTGGCCA----------------
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---------------TTCTTCAAAAAAAAAGTGAGAGATTG---------------------------------------
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-------------------------------------------------------------------------------G
CCAAATCATGGTCTACGTGAACTTTTAAAAAGAGCGCTGAAATCGGCCAAGAATGTTTTCGAAGTCTATTCCTCATCGAG
AATACCCCTTCCCTCCCTTCGCGTCGCCTCCCTCTGGGCGACGCCAGGGGTCCTTCAACCCTAGCACCGCAGGCCTCCCC
TTCCCCCTCCTTC-------------------------------------------------------------------
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----------------------------------------------------TGCCGCCGCTACCGCCGGCGTGGGCTGC
AGTGGCAGCGGGCTCGGTGCCGAAGGCACCTGGGCTGGTGGATACGGTGCGATCTCATCAAAGGAGGTAGGGCGACCCCT
CTTGTGAGATCCGAAGGCGGCGGCTGGGGCGTCGATCCCATGCCGTGCGGCGGCGGCCCTGTGGACGGCGGCGGTGGCAG
CGCCCCATCGGACGGGGTGGCTGATCTGTGCGGAGATGGTGGCGGTGGCGACT---------------------------
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--------------------------------------------------------------GCGGATCCAACGCCCCGA
TCGGATCCGCCGCGGTGTGGCCTTCCGCCGACCGGCGACGCGTGGAGAGACTGGCGAGGAGATGACAGATCTTTGCCGGA
TTGCCGATGACGGCGTTCGTCTTCGTGGAGAGGCTCCGCTCGGTTCCAGCTAGCCGCGGGATCGGGACGACGTGGCTTCC
GGTGAAAATCGTGCCTGACTGTGGTCTTGGCGGACGATTGCGGCGTCTCGGACGTCGTTCCCTTCTCGAGGCATCGTCGT
TGCAGGTAACGTCAACCTGATCGAGAGGTTCTGGGGGAAACCCTAGATCTAGGTTTATCGGATCGGACGATGGCGACGTT
TTTGATGTCGTTCTCCCTTCTGGGAGCATCGTTTTGGAGCAAGTGCTGGCTGAAAGGAACAAGAGAAGGAGCGGCGTGGT
ATCTGACACATCAACAACGACAGGTCTCAGCGGCATGAAGCAGCGGGGTCTTGTCGGTGGGCGTGTGATGATGGACGAGA
GCAGG------------------------------------------------AGCAGAAGCTGCGCCGTCGGGTCCACG
GCCAGGACCGCGTGCAGGCTCGGCGCTGTCGCGGCCGCTTAACGCGTGCCGACGGCATATATGCCGGTGTATTCACTAGC
TACAAAATTGCGTATAGATGACGGTGTGCTTGAATATACTTGGCGGACTGATGCATCCATTAATTTGAGTGCTACGCTTA
CTTGCTGCGTGTCAAGTAGTAGTGAGAAACTGTGGAGTTTTTGTTCTTTTACCCGCCTTGGGATCATAAAATTTTCA---
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>SNPs
---------------S--S-------------------------------------------SS-----S-S--------
----------------------------S-S-S--S-SSSS---S-----------------------------------
------------------------------SSS--------S--------------------------------------
----------------------------S-----------S----------S----------------------------
----------------------------------------S---------------------------------------
--------S---S-S-------------S------------------------S--------------------------
-----------------------------------S-----S--------------------------------------
-----------S---------------------S-----------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------------------------------------------
-----------------S--SS--------------------S-------------------------------------
---------------------------------------------------------S----S-----------------
------------S------------------------S------------------------------------------
-----------------------------S------S-------------------------------------------
----------S---------------------------------------------------------------------
-----------------------------------------------S--------S-----------------------
-----------------------------------------------------------------------S--------
-------S-S--S-------------------------------------------------------------------
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-----------------------S-----S--------------------------------------------------
S-------------------SS-----------S----------------------------------------------
----------------S-------------------------------------SS----------------------SS
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-----------------------------------------------------------------S--------------
-----------------------------------S------------S-----------------S-------S-----
---------------------------------------------S----------S------------------S----
-------------------------------------------------S---------S--------------------
--------------S-----------------------------------------------------------------
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------------------------------------S--S-------SSS--SS--S-SSS-S-SSSSS-----SSSSS-
S-S-SS---SSSSS--S-S-S-SSS-S-SS--S---SS-SSS--S--SSSSSSSSS--SSS-----S--S---SS-S-S-
S-S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
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------S-S------S-----S---SSS-SS-------------------------------------------------
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------------------------------------------S--------S--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-SS-S--SS-------S------SS-S-S-S-
--SS--S--S--S-SSS-SSSSS-SS-SSSSS--SS-S-SSS--SSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-----SSS-S-S---SS-S-----S-S--S-SS----S--------------------------------------
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------------------------------------------------------------S-S-S-S--S-S-SS-S---
---SSSSSSS-S-SS-----------------------------------------------------------------
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--S-S-S--SSSS-S--S----SS----S--S--S--S---SSSSSSS-SSSSS-SSSSS-SSS-SSS---SSSSSSSS-
SS--SSSSSSSSS--S-S--------------------------------------------------------------
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>forward_516
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----------------TTGCTTCCGGCCAACTCTAG--------------------------------------------
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>reverse_2867
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------------------------------------------------------------------GCGTCAGGCATCTC
CCTAAA--------------------------------------------------------------------------
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------------------------
