>input_sequence_79853
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---------------------------------------ATGGCGACTACATTCACGGCACCAATTCTCTGCAACTTGAG
AGCGAACCCACGCCTGAACCACAGCACCAGACAACAGCCACGGCACTTGCACCTGAGCTCGGCGAGAATGGCGCCCACGC
TGACAGGCTCAAGAACACGGAACGACTTCCGCGCGGCGGCCGTGTACAAGGTGAAGCTGATCGGGCCGGAGGGGAAGGAG
AGCGTGATCGAGGTGGCGGAGGACAGCTACATCCTGGACGCGGCGGAGGAGGCCGGCGTGGAGCTGCCCTACTCGTGCCG
CGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCCTGGAGGGCGGCGTGGACCAGTCGGACCAGTCGTTCCTGGACGACG
CGCAGGTCGGCGCCGGCTACGCGCTCACCTGCGTCGCCTACCCCACCTCCGACCTCGTCATCGAGACGCACAAGGAGTCC
GACCTCTACTAG--------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G292400
CACAACATGCTGTCAAAGATGCCGCGCTTACTCTTTTCGGCATTACTTATGTTGTAAGGGTTTCATCTTACTCTGAAAGA
GCTTTGTGGTGAAAAGGAAATCTAAAAGTTCTCGCATCATACTATATCATGCGGCGGGTAATTCAAGTGCGGATGACAAA
GATCCGCATAGAGTTTCCCACATAAATGGAAAAGCTGATTCACTACCATAGACTTGATATGTGTCATGCACTTTGCAGTC
TCATCCATATCCCAATCCCAAATACATGTTGTGAAAAACTATTGGCTGCAACTGGGTATCTTTTATTCATCAGGCACTT-
---GACTGTGATGCCATTGCTTGTACTC----TAATGTCCATTGTCAGAGATTAAAAAAATTGATCCATGCTCATCAACC
AGCTTCTACTGTCTACGTTTTATGGCCCATTCGGGACATTCTTCTGCCTTTTTCA----TGCGAAAGGTGTCCTGTGGAA
GAGTCATATTGCTTTCTTAGAAATGG--ATGTCAAACTTCTGTGA--AGACGATATCGTTGTTCTTTCGTAACTGCCAAA
ACGTCTTACATTTGTGAACAAA-GGGGTACCTGCTAAGATGGGTAGGACGTAGTTGTGACGCTTTACTTCATTTTAGCAC
CTGCTTTCAGACCC------------------------------------------------------------------
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--------------------ATTTTCTAGCCAGAAATACTAATTTGGTTGCTTGGTCACATCTTATAGCTCAATCAACAC
CATACTTTCTTAATAATTCCGCTGCTGTATATAGTAGATAAGTGCCTCTTT-----------------------------
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----------AAAATGGTCCTAGTAAAGCATAATTTTGGGACATGTCTAATTGAATTGTTAAGTTTTGAAGCAGTGTAAA
ACCAATTTATT-AAGCAACACATGTTAAGTATTATTGCAGCTAAAAATGGAAATTCTGGGGCCAAATATC----------
---TGTGCCTGTAAAATCCTTCTTTCTGTGATGTCTGTCAT---TATAGCACCTCCTCTCCGAAAGTGTTTCAGACTAGT
AATTAGTCCACCATTTTTTCAGACCCCAAAGCATCCGAGATGGCGACTACATTCACGGCACCAATTCTCTGCAACTTGAG
AGCGAACCCACGCCTGAACCACAGCACCAGACAACAGCCACGGCACTTGCACCTGAGCTCGGCGAGAATGGCGCCCACGC
TGACAGGCTCAAGAACACGGAACGACTTCCGCGCGGCGGCCGTGTACAAGGTGAAGCTGATCGGGCCGGAGGGGAAGGAG
AGCGTGATCGAGGTGGCGGAGGACAGCTACATCCTGGACGCGGCGGAGGAGGCCGGCGTGGAGCTGCCCTACTCGTGCCG
CGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCCTGGAGGGCGGCGTGGACCAGTCGGACCAGTCGTTCCTGGACGACG
CGCAGGTCGGCGCCGGCTACGCGCTCACCTGCGTCGCCTACCCCACCTCCGACCTCGTCATCGAGACGCACAAGGAGTCC
GACCTCTACTAGCATGTAGCAGC---ACTAGTTTCGTTCAATCTTTGGCAGTCT--GTCTGATCTGATCCGCCTGCAT-A
TGTAGCTGTCGCCTGAATCTTAGCTAAATTTTATTCTTG-----CTTCATCGCCGTCGACTTTAACCTGAGCAAGTGCAC
TTTTTATTTTCATTTTGTCCTTCTCTCGATGTTCTCATGTGGGTATCTCGGAATCTGTCGAGCCCATCTTGACGTGGACG
GCCGTGGGTATTGCTGTGGCGCGTCAATCGGTTTCAGGTTCGCCGCCGTTCTCGCCACGTCCACGAA-CAAGAACGGGTG
AATCTTCCCCGGA---GTGTTGTGCCGCGCGCATTGCGTGTTTTTGCTATCGCGCGCGGCAACATCATCCCATTATCTGG
ATGCTTTGGTGCAGAAAGGTGTGTCACTTGACTTGGGGGTAAAGTATACTACATACGTAACATACCACCACCGCCACGAA
AACATCCATCTCGACAGCGCGAGGAGATGCTTTTTTTGAACTCCAAAATTGCTGTGATCTTTGGCGGTATATGTTGGTTG
GTTGGTTGGTGTATACGTACGTTTTGT-----AAACACACTTGAAAAGACCTTTTGCGGTTTGGTGCGAAGAAAAGAGAT
GTAATAATAGGGTCGGCACGAAGCGTGCGTGTCCAAAACGGATTCGCGTGTACCTGTACTGGATATCCCATCGGCGTTAG
GTGCGGCATTGAGGTCGAGCAAGCG---------GACTGGCCGTCCCTGGTCGTGGTCGTGGGGAGCGCAGTGCAGACAA
AAGTTGAGGAAACAAAAGACGATGAACTGGCGGCTCAAGGACGATTTGTAGGGCAAAGATGCCGAATT-AAAAGGCGCCA
AATGGAGGAAAGGGGATCGTCGATCACGATGTTGCTCACATGTAGCGTATCGAATTATTGTTGTCACAACTCAC-GAATC
ATAGGATCCAGTCGTGGGTGTGAGCGAGTAAAGTCTAAAATAAACCTTCAACTCATAGAGCTAGTCCGAATCAAACCTCG
AAC
>chr2A_1
CACAACATGCTGTCAAAGATGCCGCGCTTACTCTTATCGGCATTACTTATGTTCTAAGGGTTTCAGCTTACTCTGAAAGA
GCTTTGTGGTGAAAAGGAAATCTAAAAGGTCTCGCGTCATACTATATCATGCGGCGGGTCATTCAAGTGCGGATGACAAA
GATCCACATAGAGTTTCCCACATAAACGGAAAAGCTGATTCACTACCATAGACTTGATATGTGTCATGCACTTTGCAGTC
TCATCCATATCCCAATCCCAAATACATGTTGTCAAAAATTATTGGCTGCAACTGGATATCTTTTACTCATCAGGCACTTA
CTTGACTGTAATAGCATCGCTTCTACTTTAATTAATGTCCATTGTCAGAGATTAAAAAATTTGGTCCATGCTCATCAACT
AGCTTCTAATGTCCATGTTTTATGGCCCATTCGGGTCATTCTTCTGCCTTTTTTTTCCGTGCGAAAGGTGTCGTGGGGAA
GAGTTGTATTGCTTTCTTCGAAGTGGATATGACAAACTTCTGTGATCAGACGATATTGTTGTTCTTTCGTAACTGCGAAA
ACGTCTTACATTTGTGAACAGATGGGGTACCTGCTAAGACGGGTAGGACATAGTTGTGACACTTTACTTCATTTTAGCAC
TTGCTTTCAGACCT------------------------------------------------------------------
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--------------------ATTTTCTAGCCAGAAATACTAATTTGATTGCTTGGTCACATCGTATAGCTCAATCAACAC
CATACTTTCTAAATAATTTTGCTGCCGTATATAGTAGATAAGTGCATCCCCAACCTGCTAATCGTCTCGACCGCTCGTGG
CGGATCTCCCAGTCAAGGTTCGTGTTATGGTTTGACACTCGTTGATTATGGATGATACTCTGTTGTGCCGTGGGCCGTGG
GGCTTGGTACGCACGCCGGTGCGGTGCGTTAGGTTGTTTGCATAGTCTTGGCATTGTGATCCCTCAACAACACCCCACAT
CTACTTGTGTCTCTCGTGGTGTTGGTCTTTCTGCATGCTAGCTAGGTCGTGCCTTCTCCTGGGCGTCAATTTTTTTCTCT
TCTTCTGTAACCTTGTTACCTGTACGGTTTTCTGCCCGGTTTCCCTCATAAACAGGGTCAACTTGTGTAGGTTTTCGGTC
TGGTTTTCCTTATAAACTGGTTCAGGCTTTGGCAGCTTTTTGAGCAATATATTCAGGTGGGGATCCTCCCCCCCGGTGAC
CGTCCAAAAAAAATTGGTCCTTGTAAAGCATAATTTTGGGACAGGTCTAATTGAAGTGTTGGGTTTTGAAGTAGTGTAAA
ACCAATTTATTTAAGCC-CACATGTTAAGCCTTATTGCACCCAAAAGTGGAAATTTTGGGGCCAAATATTTCTGCTTGAA
TTTTGTGCCTGTAAACTCCTTCTACTTTC--TGTCTGTTATTACTATAGCATCTCCTCTCTTGTTACTGAATGAGGATT-
---------ACCATTTTAGCAGA-CCCCAAGCACCCGAGATGGCAACTACATTCACGGCACCAATTCTGTGCAACTTGAG
AGCGAACCCACGCCTGAACCACAGCACCAGACAACAACAGGCGGACTTGCACCTGAGCTCGGCGAGAATGGCGCCCACGC
TGACAGGCTCAAGAGCACGGAGCGACTTGCGCGCGGCGGCGGTGTACAAGGTGAAGCTGATCGGGCCGGAGGGGAAGGAG
AGCGTGATCGAGGTGGCGGAGGACAGCTACATCCTGGACGCGGCGGAGGAGGCCGGCGTGGAGCTGCCCTACTCGTGCCG
CGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCCTGGAGGGCGGCGTGGACCAGTCGGACCAGTCCTTCCTGGACGACG
CGCAGGTCGGCGCCGGCTACGCGCTCACCTGCGTCGCCTACCCCACCTCCGACCTCATCATCCAGACGCACAAGGAGTCC
GACCTCTACTAGCA----------GCACTAGTTTCATTCAATCTTTGGCACTGTGAGTGTGATCTGATCCGCCTGCATAA
TGTAGCTGTCGCCTGAATCTTAGCTAAATTTTATTCTCACCCCCCTTCATCGCCGTCGACTTTAACCTGAGCAAGTGCAC
TTTGTATTTTCATTTTGTCGTTCTCTCTACGTTCTCATGTGGGTATCT-GGAATCTGTCGAGCCCACCTTGACGTCGACG
GCCGTGGGTATTGCAGTGGCGCGTCAATCGGTTTCAGGTTCGCCGCCGCTCTCGCCACGTCCACGAA-CAAGAACGGATG
AATCTTCCCCGGA---GTGTTGTGCCGCGCGCATTGCATTTTC-TGCTATCGCGCGCGGCAACATCATCCCATTATCTGG
ATGCTTTGGTTCAGAAAGGTGTGTCACTTGACCTGGGGGTAAAGTG---TACGTACGTAACACACCACCACCACCACCAA
AACATCGATCTCGACAGCGCGAGGAGATGCTTTC-TTGAACTCCGAAATTGCTGTGATCTTTGCCGGTATATGTTGTTTG
GTTGGTTGGTGTATACGTACGTTTTTATAAGGAAACACACATGAAAAGACCTTTTGCGGTTTGGTGCGAAGAAAAGGGAT
GTAATAATAGGGCCAGCACGAAGCGTGCGTGTCCAAAACGGATTCGCGTGTACCTGTACTGGATATCCCATCGGCGTTAG
GTGCGGCACTGTGGCAGGGAGGTGGCGAGCGAGCGACTGGCCGTCCCTGGTCGTGGTCGTGGGGAGCGCAGTGCAGACAA
AAGTTGAGGAGGCAAAAGACGATGAACTGGCGGCTCGAGGACGATTTGTAGGGCAAAGATGCGGAATTTAAAAGGCGCCA
AATGGAGGAAAAGGAATCGCTGATCACGACGTTGCTCACATGTAGCATATCGAATTATTGTTGTCACGAACGAAGGAATC
ATAGGATCCAGTCGTGGGTCTGAGC-------------------------------------------------------
---
>chr2B_3
--CAACATGCTGTCAAAGATGCCGCGCTTACTCTTATCGGCATTACTTATGTTGTAAGGGTTTCAGCTTACTCTGGAAGA
GCTTTGTGGTGAAAAGGAAATCTAAAAGGTCTCGCATCACACTATACCATGCGGCGGGTAATTCAAGTGCGGATGACAAA
GATCCGCATAGAGTTTCCTACATAAATGGAAAAGCTGATTCACTACGATAGACTTGATATGTGTCATGCACTTTGCAATC
TCATCCATATCCCAATCCCAAATACATGTTGTGAAAAACTATTGACTGCAACTGGGTATCTTTTATTCATCAGGCACTT-
---GACTGCAATGACATTGCTTGTACTC----TAATGTCCATTGTCAGAGATTAGCTTTTTTGATCCATGCTGATCAACT
AGCTTCTAATGTCTAAGTTTTATGGCCCATTCGGGACATTCTTCTGCCTTTTTCA----TGCGAAAGGTGTCGTGTGGAA
GAGTCATATTGCTTTTTTAGAAATGGATATGCCAAACTTCCGTGATCAGATGATATCGTTGCTCCTTTGTAACTGCCAAA
ACATCTTACATTTGTGAACAGAGGGGTACCTAGTAAAGACGGGTAGGACGTAGTTGTGACACTTTACTTCATTTTAGCAC
TCGCTTTCAGACCTACTCCCTCCATTGCTTTATATAAGGTGCATTTGTTTTTTGATAAAATTCCACAATGTAAGGTGCAT
TTCTTCCAATTCTTCAAAAATCCGTTTTTAGCCTCTAGTAAGTATCTTTTCCCCGATTGCGTGTGTCTCTTCTTTTAAAG
AGATAAAGGAAAGTACCTCTCTCCTGATTGTGCATATATCTTACTTTCCTAGCTTAAATGATTTACTTGCCACTAATAAA
TAATTTAGTCAAGGTTAATTTTCTCCCAACTTGTGTATAATTATGTGTCTTGGTCACCGTGCTGAAAATTATACACCTTA
CATAAAGGAGTGGAGGGAGTATTTTCTAGCCAGAAATACTAATTTGATTGCTTGGTCACATCCTATAGCTCAATCAACAC
CATACTTTCTAAATAATTCCGCTGCCGTATATAGTAGATAAGTGCTTCTT------------------------------
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----------AAAATGGTCCTGGTAAAGCATAATTTTGGGACAGGTCTAACTGAAGTGTTGAGCTTTGAAGTAGTGTAAA
ACCAATTTGTT-AAGCA-CACATGTCAAGCCTTAATGCACCCAAAAATGGGAATTTTGGGGCCAAATATTTCTGCTTGAA
TTTGGTGCCTGTAAACTTGTTCTTTTTTC--TGCCTGTTAT---TATAGCGTCTCCTCTCTTGTTTCTGAACGATGATT-
---------ACCATTTTAGCATA-CCCCAAGCACCCGAGATGGCAACTACATTCGCGGCACCAATTCTCTGCAACTTGAG
AGCGAACCCACGCCTGAACCACAGCACCAGACAACAGCCACGGCACTTGCACCTGAGCTCGGCGAGAATGGCGCCAACGC
TGACAGGCTCAAGAGCACGGAGCGACTTCCGCGCGGCGGCCGTGTACAAGGTGAAGCTGATCGGGCCGGAGGGGAAGGAG
AGCGTGATCGAGGTGGCGGAGGACAGCTACATCCTGGACGCGGCGGAGGAGGCCGGCGTGGAGCTGCCCTACTCGTGCCG
CGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCCTGGAGGGCGGCGTGGACCAGTCGGACCAGTCATTCCTCGACGACG
CGCAGGTCAGCGCCGGCTACGCGCTCACCTGCGTCGCTTACCCCACCTCCGACCTCGTCATCCAGACGCACAAGGAGTCC
GACCTCTACTAGCATGTAGCAGCAGCACTAGTTTCATTCAATCTTTGACACTCT--GTCTGATCTGATCTGCCTGCAT-A
TGTAGCTGTCGCCTGAATCTTAGCTAAATTTTATTCTCA-----CTTCGTCGCCGTCAACTTTAACCTGAGCAAGTGCAT
TTT--------ATTTTGTCGTTCTCTCTACGTTCTCATGTGGATATGT-GGAATCTGTCGAGCACATCTTGACGTGGACG
GCCGTGGGTATTGCTGTGGCGCGTCAATCGGTTTCAGGTTCGCCGCCGTTCTCGCCACGTCCACGAAACAAGAACGGGTG
AATCTTCCCCGGACGAGTGTTGTGCCGCGCGCATTGCATTTGT-TGTTATCGCA----GCAACAACATCCCATTATCTGG
ATGCTTTGGCACAGAAAGGTGTGTCACTTGACCTGGGGGTAAAGTA---TACATACGTAACACACCACCACCGCCACGAA
AACATCGATCTCGACAGCGCGAGGAGATGCTTTT-TTCAACTCCGAAATTGCTGTGATCTTTGGCGGTATAT--------
GTTGGTTGGTGTATACGTACGTTTTTATAAACACG----CATGAAAAGACCTTTTGCGGTTTGGTGCGAAGAAAAGAGAT
GTAATAATAGGGTCGGCACGAAGCGTGCGTGTCCAAAATGGATTCGCGTGTACCTGTACTGGATATCCCATCGG-GTTAG
GTGCGGCACTGTGGCAGGGAGAGGGCGAGCAAGCGACTGGCCGTCCCTGGTCGTGGTCGTGGGGAGCGCAGTGCGGACAA
AAGTTGAGGAAACAAAAGACGATGAACT---GGCTCAAGGACGATTTGTAGGGCAAAGATGCCGAATT--AAAGGTGCCA
AATGGAAGAAAAGGGATCGTCGATCACGATGTTGCTCACATGTAGCGTATCGAATTATTGTTGTCACTACTCAC-GATTC
ATAGGATTCAGTCGTGGGTCTGAGC-------------------------------------------------------
---
>SNPs
-----------------------------------S-----------------------------S--------------
----------------------------S---------------------------------------------------
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---------S---S---------------------------------------------S-------------------S
--------S------S--------------------------------------------------------S-------
-------------------------------S------------------------------------------------
--------------------S------------------S--------------------S-------------------
S------------S------------------------------------------------------------------
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----------------------------------------------S---------------S-----------------
----------S--------------S-------------------S----S-----------------------------
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---------------------S---------------------S-----------S----S----------S--------
-----------------S-----------SS--------S-S-------------S-------------S----------
---------------S---------S-SSSS-------S------------S--------SSSSSSSSSSS-SSSSSSSS
SSSSSSSSS--------SS----S---S-----S----------S-----------------------------------
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--------------S------S----------------------------------------------------------
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------------------------------------------------------------------S-------------
--------------------------------------------------------------S-----------------
-----------------------------------S--------------S-----------------------------
-------------------------------------SS-----------------------------------------
---S---------------S-------S-S------------------S-------------------------------
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-------------------------------------S-S---S------------------------------------
----------S---------------------S-------------SSS-------------S-----------------
------S---------------------------S---------S-------------------------------S---
-------------------------SS-------------S---------------------------------------
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--------S--S--SS-S-SS--S--------------------------------------------------------
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-----------S-------------------------------------------------------S------------
-------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_36
----------------AGATGCCGCGCTTACTCTTT--------------------------------------------
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>reverse_2449
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------------------------------------------------CGGAATCTGTCGAGCCCATC------------
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