>input_sequence_79848
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-----------------------------------------ATGGAATCCGACGGCGAGCATTCGCCGCCGCACGCCTGC
GGTGCTGGCCACCGGGCGTCGCACTCTCTCCCGACCTCGGCGGGCG----------------------------------
-------------------------------------------------------------------GCAGCGTCTGCGT
TTCCTGCGCCGCGGCCCTCCTCTCTTCCGCCTCCGCGCCGTCCCACCACGTCTCCCACGTGCTCGCCAGCCTCTCCCTCG
CCCTAGCTGACCCGGCCTTCCTCGCGCCTCTCCGCGCCGCCCACCCGCGCCTCCTTGCGGTGCCACTAGTCGAGGCCCTC
GCGGGCGCGGCCGCCCGCCGAGACGCCGCACTCGCCACCCAGGCATCCGACCTCGCCGCCGACCTCGCGTCCGCCGTGGG
CCCCCCCGCCGCCTCCGAGCTCGTCGCGCGCCTCGCCCACGTCCTCTCCTCGGGTTCTCTCGTCAAGCACTTACACATGG
TACGTGTGCCGCTACTCCGTGCTACGCTGTGCTGA---------------------------------------------
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>chr2B_1_TraesCS2B01G292600
CGGTGGCGCGGCGGCGGCGGTGAAGGCGGCGGCGGCTGCGGCGGCGGTGCGGGTATTAGGGTTTAGAAGCGGAAGCGATC
GTAACCTAGCGTGATACCATGTAAGACAATAAGTTTTGGGAACCAGCACAACCCTCTAGGGGTGGCTTATCTCATTATAT
ATAATGGTTGTGTTACAATATGTACCATATACGTACATAGGTACAGAAGCTATACATAGTCTAACAAATTTTGTTTTGTT
TTTTGCTGGAACATGGTGATGGGAGCCGACAGAGTTGGACGACGCCGGCGATGCTACAACCGTCAACAGTGGGAGCTACA
AGCAACGATGGCGAGATGGAAAGCTGTGACCATGGAGTTGATTTGCTGGGACGGGGGGACGAGTGTGGTGGCGGAGTTGC
AACGGTGGTTGGTGGTGGAGATGGGACCGTGCCCCCTGCTTCATCCACAGGGCCGTCGGGAGCTGCAATGGCAACCTCGG
GCACGACGGCGACCTCGCGCGCGACGACGGCGACTTGGTGCAGCGCGCCTGCACGAGCAAACCGACGGCGACCTCGCGCG
CGACGACGGCGACTTGGTGCAGCGCGCGTGCACGAGCAAACCGACGGCGACCTTGCGCGCGACGACGACGACTTGGTGCA
GCGCGCCTGCACGAGCAAACCGACGGCAAGCGCGGGTCACGGGGCGGCCGACGAGCGTATGTTGCGCGGCCGTGCGGGAG
GCCGGCGAGTGCGGATGAGGTCGAGCGGTTGCGCTAGGCTCTATCCTCTTCTTCTTTTTTCTTTTTTATTTAGATGAACG
AATGATCGTACGGTCTAAAAGCGGTGTATCGTGAGGTAACGCAGCGACCGGCCCAAATTTGGGCCGGCGCGCCGGCGCGT
ATCACTCGCCTTAAAAAAAAATCTTCCTCAAAAAAAAAAAAAACTCGCCTTAAAAAATTCCGTCCATTTCAAGGCGGCTT
-AAGGTCTCCTGCAAAACCTCCACAATCCCCCTCGCTCCGCATGGAATCCGACGGCGAGCATTCGCCGCCGCACGCCTGC
GGTGCTGGCCACCGGGCGTCGCACTCTCTCCCGACCTCGGCGGGCG----------------------------------
-------------------------------------------------------------------GCAGCGTCTGCGT
TTCCTGCGCCGCGGCCCTCCTCTCTTCCGCCTCCGCGCCGTCCCACCACGTCTCCCACGTGCTCGCCAGCCTCTCCCTCG
CCCTAGCTGACCCGGCCTTCCTCGCGCCTCTCCGCGCCGCCCACCCGCGCCTCCTTGCGGTGCCACTAGTCGAGGCCCTC
GCGGGCGCGGCCGCCCGCCGAGACGCCGCACTCGCCACCCAGGCATCCGACCTCGCCGCCGACCTCGCGTCCGCCGTGGG
CCCCCCCGCCGCCTCCGAGCTCGTCGCGCGCCTCGCCCACGTCCTCTCCTCGGGTTCTCTCGTCAAGCACTTACACATGG
TACGTGTGCCGCTACTCCGTGCTACGCTGTGCTGAGATGCATGCTAGTTATGGTCAGCGGTTATGG--------GCTGCT
GGGCAGGGAGAGGTGGTGATTTTTTTTTTTTTTGCGGGTAAGAGGTGGTGGATTTTAGAAATAATGCTACATTGGGTATG
TTGCCTGCAAATAGTTTTAAGTGGAATGGTTGAAAGGAAATTATTCAAACTGTGTGAAAGAATGTGGTGAATAGTCCAGG
ATTTACTATTTAGTGAGCAGTCGGAACCAATTTTTTTGCTGCAGAAAACATGGCGTCTCACATTCTTTGATTGTACAACT
CTGATATGGTAAATTGGTAATGGCGCATAGCCAAGAGCTTGATTG------GACACACATGTAGCATTTCTTATTATCGG
CAGAGTATTCATGATCTATTTGCTTCCATTTTGGACATTTTAGTGTTGATGAAGTTTTTTTTGAAGTGTCTTACACATTG
TTGCTGCTTTATACTACTCCCTCCGTCCGGAAATACTTGTCACCAAAATGAATAAAAGAGGATGTATCTAGATGTATTTT
AGTTCTACATACATCCCTTTTTGTTCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATTTATTAATTTTCATCATG
CACAGTTCTATGCTCTCGATTACCGAACATGTATGAACCTATTTTATTACTACAGTTTCTGATTTTCCAACTCCTAGCCA
GGATCATACAAGTTGCATCATGTGAATCATGCCTCTTTCTTTCTTGTTCACATGTAGCAGTGTCTTGTTTCCATAGTGTA
CAGCTATATTCTGCTAGTGAAACTATCATGCGATTTTGTGGTCTTCATATGCTTGCATTTTATTGCTTGATGTTTTCTGT
GGCACCATCGGTTTCATTCATCTCATCTGTAATTTCTAGTTCTCTATGTTCTTAGTACTCGTATGCACATTACATATCTT
TTCCTTACATTTTGTTACCTTCATATGGACCGAGTTACAACTAGAGAGAAGCATCAGTTAGATCCATTGTGGGTATTTAT
CTCCTTAGT-
>chr4B_227
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------------------------------------------------------------------AATTTTGTTTTGTT
TTTTGCTGGAACATGGTGATGGGAGCCGACAGAGTTGGACGACGCCGGCGATGCTACAACCGTCAACAGTGGGAGCTACA
AGCAGCGATGGCGAGATGGAAAGCTGTGACCATGGAGTTGATTTGCTGGGACGGGGGGACGACTGTGGTGGCGGAGTTGC
AACGGTGGTTGGTGGTGGAGATGGGACCGTGCCCCCTGCTTCATCCACAGGGCCGTCGGGAGCTGCAATGGCAACCTCGG
GCACGACGGCGACCTCACGCACGAAGACGGCGACTTGGTGCAGCGCGCCTGCACGAGCAAACCGACGGCGACCTCGCGCG
CGACGACGGCGACTTGGTGCA-----------------------------------------------------------
GCGCGCCTGCACGAGCAAACCGACGGCAAGCGCGGGTCACGGGGCGGCCGACGAGCGTATGTTGTGCGGCCGTGCGGGAG
ACCGG---------------------------------------------------------------------------
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---------------------------------------CGAGTGCGGATGAGG-TCGAGCGGTTG--------------
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------------------------------------------------------------------------------CG
CTGGGCTCTATCCTCTTC--------------------------------------------------------------
-----------------------------TTCTTTTTTCTTTTTTATTTAGATGAACAAATGATCGTACGGTCTAAAAGC
GGTGTATCGTGAGGTAGCG-------------------------------------------------------------
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-----------------------------------------CAGAGACTGGCCCAAATTTGGGCCAGCGCGCCGGCGCGT
ATCAC-----
>chr5B_229
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--------------------------------------------------------------------TTTTGTTTTGTT
TTTTGCTGGAACATGGTGGTGGGA--------------------------------------------------------
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---GCTGACGACGCGTCGAGCCAGAGTTGGACGACGTCGGCGATGCTACAACCGTCAACGGTGGGAGCTACATGCAGCGA
TGGCGAGATGGAAAGCTGTGACCATGGAGTTGATTTGCTGGAACGGGGGGACGACTATGGTGACGGAGCTGCAACGGCGG
TTGGTGGTGGAGATGGGACCG-TATTCATCCACGGGGCCGTCGGGA----------------------------------
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------------------------GCTGCAATGGCAACCTCAGGTA-------CGATGGCGACCTCGCGCGCGACGACGG
CAACTTGGTGCGGCGTGCCGGCACGAGCAAACCGACAG-------------------------CAAGCACGGGTCACGGG
GCGGCCGACGAG--------------------------------------------------------------------
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-------------------------------------------------------CACATGTTGCACAGCCGTGTGGGAG
GCCGG----------------------------------CGAGTGCGGATGAGG-TCGAGCGGTTG--------------
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------------------------------------------------------------------------------CG
CTGGGCTCTATCC---TC--------------------------------------------------------------
-----------------------------TTCTTTTTTCTTTTTTCTTTAGATGAATGAAGAATTGTACGGTCTAAAAGC
AGTGTGTCGTGCGGTAGCG-------------------------------------------------------------
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-----------------------------------------TAGCGACCGGCCCAAATTTGAGCCGGTGCGCCGGCGCGT
ATCATTCGCC
>chr2A_929
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------------------------------------------------CTTAAAAAAATCCGTCCATTTCAAGGCGGCTT
CAAGGTCTCCTGCAAAATCTCCACAACCCCCCTCGCTCCGGATGGAATCCGACGGCGAGCATTCGCCGCCGCACGCCTGC
GGCGCTGGCCACCGGGCGTCGCACTCTCTCCCGACCTCGGCGGGCG----------------------------------
-------------------------------------------------------------------GCAGCGTCTGCGT
TTCCTGCGCCGCGGCCCTCCTCTCCTCCGCCTCCGCGCCGTCCCACCACGTCTCCCACGTGCTCGCCAGCCTCTCCCTCG
CCCTAGCTGACCCGGCCTTCCTCGCGCCTCTCCGCGCCGCTCACCCGCGCCTCCTTGCGGTGCCACTAGTCGAGGCCCTC
GCGGGCGCGGCCGCCCGCCGAGACGCCGCACTCGCCACCCAGGCATCCGACCTCGCCTCCGACCTCGCGTCCGCCGTGGG
CCCCCCTGCCGCCTCCGAGCTCGTCGCGCGCCTCGCCCACGTCCTCTCCTCGGGTTCCCTCGTCAAGCACTTCCACATGG
TACGTGTGCCGCTACCCCGTGCTACGCTGTGCTGAGATGCATGCTAGTTATGGTCAGTGGTTATGGTGATGGACGCTGCT
GGGCAGGGAGA--------------------------------GGTGGTGGATTTTGGAAATAATGTTACATTGATTATG
TTGCCTGCAAATAGTTTTAAGTGGAATGGCTGAAAGGAAATTATTCAAACTGTGTGAAAGAATGTGGTGAATAGTCCAGG
ATTTACTATTTAGTGAGCAGTCGGAACCAAATTTTTTGCTGCAGAAAACATGGCGTCTCATATTCTTTGATTGTGCAACT
CTGATATGGTAAATTGGTAATGGCGCATAGCCAACAGCTTGATTGCACATGGACACACATGTAGCATTTCTTATTATCGG
CAGAGTATTCAAGATCTATTTGCTTCCATTTTGGACATTCTAGTGTTGATGAAG-TTTTTTTGAAGCGTCTTACACATTG
TTGCTGCTTTATAC------------------------------------------------------------------
-----------------------------------------------------------TATTTATTAATTTTCATCATG
CACAGTTCTATGCTCTCAATTACCGAACATGGATGAACCTATTTTATTACTACAGTTTCTGATTTTCCAACTCCTAGCCA
GGATCATACAAGTTGCATCATGTGAATCATGCCTCTTTCTTTCTTGTTCACATGTAGCAGTGTCTTGTTTCCATAGTGTA
CAGCTATATTCTGCTACTGAAACTATCATGCGATTTTGTGGTCTTCATATGCTTGCATTTTATTGTTTGATGTTTTCTGT
GGCACCATCGGTTTCATTCATCTCACCTGTAATTTCTAGTTCTCTATGTTCTTAGTACTCGTATGCACATTACATATCTT
TTCCTTACATTTTCTTACCTTCATATGGATCGAGTTACAACTAGAGAGAAGCATCAGTTGAATCCATTGTGGGTATTTAT
CTCCTTAGT-
>chr2D_929
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------------------------------------------------CTTAAAAAAATCCGTCCATTTCAAGGCGGCTT
CAAGGTCTCCTGCAAAACCTCCACAATCCCCCTCGCTCCACATGGAATCCGACGGCGAGCATTCGCCGCCGCACGCCTGC
GGCGCTGGCCACCGGGCGTCGCACTCTCTCCCGACCTCGGCGGGCG----------------------------------
-------------------------------------------------------------------GCAGCGTCTGCGT
TTCCTGCGCCGCGGCCCTCCTCTCCTCCGCCTCCGCGCCGTCCCACCACGTCTCCCACGTGCTCGCCAGCCTCTCCCTCG
CCCTAGCTGACCCGGCCTTCCTCGCGCCTCTCCGCGCCGCACACCCGCGCCTCCTTGCGGTGCCACTAGTCGAGGCCCTC
GCGGGCGCGGCCGCCCGCCGAGACGCCGCACTCGCCACCCAGGCATCCGACCTCGCCGCCGACCTCGCGTCCGCCGTGGG
CCCCCCTGCCGCCTCCGAGCTCGTCGCGCGCCTCGCCCACGTCCTCTCCTCGGGTTCCCTCGTCAAGCACTTCCACATGG
TACGTGTGCCGCTACCCCGTGCTACGCTGTGCTGAGATGCATGCTAGTTATGGTCAGTGGTTAT----------------
-------------------------------------------GGTGGTGGATTTTAGAAATAATGCTGCATTGATTATG
TTGCCTGCAAATAGTTTTTAGTGGAATGGTTGAAAGGAAATTATTCAAACTGTGTGAAAGAATGTGGTGAATAGTCCAGG
ATTTACTATTTAGTGAGCAGTCGGAACAATTTTTTTTGCTGCAGAAAACATGGCGTCTCATATTCTTTGATTGTACAACT
CTGATATGGTAAATTGGTAATGGCGCATAGCCAAGAGCTTGATTGCACATGGACACACATGTAGCATTTCTTATTATTGG
CAGAGTATTCATGATCTATTTGCTTCCATTTTGGACATTTTAGTGTTGACGAAG-TTTTTTTGAAGCGTCTTACACATTG
TTGCTGCTTTATAC------------------------------------------------------------------
-----------------------------------------------------------TATTTATTAATTTTCATCACG
CACAGTTCTATGCTCTCGATTGCCGAACATGGATGAACCTATTTTATTACTACAGTTTCTGATTTTCCAACTCCTAGCCA
GGATCATACAAGTTGCATCATGTGAATCATGCATCTTTCTTTCTTGTTCACATGTAGCAGTGTCTTGTTTCCATAGTGTA
CAGCTATATTCTGCTACTGAAACTATCATGCGATTTTGTGGTCTTCATATGCTTGCATTTTATTGTTTGATGTTTTCCGT
GGCACCATCGTTTTCATTCATCTCACCTGTAATTTCTAGTTCTCTATGTTCTTAGTACTCGTATGCACATTACATATCTT
TTCCTTACATTTTCTTACCTTCATATGGATTGAGTTACAACTAGAGAGAAGCATCAGTTAGATCCATTGTGGGTATTTAT
CTCCTTAGT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
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----S---------------------------------------------------------S-----------------
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----------------S---S---S-------------------------------------------------------
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----------------------------------------------------------------S---------------
S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----------------------
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--S-----------------------------------------------------------------------------
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----------------------------------------S---------------------------------------
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------S--------------------------------------------------S--------------S-------
---------------S-----------------------------------------S----------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------SS----
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------------------------------------------------------------S-------------------
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------------------------------------------------------S-----------S-------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-------------------------------S------------------------------------------------
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-----------------------------------------------------------------S--------------
-------------------------S------------------------------------------------------
-------------S---------------S--------------------------------------------------
----------
>forward_94
--------------------------------------------------------------------------GCGATC
GTAACCTAGCGTGA------------------------------------------------------------------
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>reverse_2015
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--------------TACTCCCTCCGTCCGGAAAT----------------------------------------------
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