>input_sequence_79847
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----------ATGTGCTGGCTCACAGCTAGACGGCGACGTCAGGCCGAAGAGGAGCGCCGGAGACTGGTGATGAGGCAAA
GAGAAGAGGCGGAGAAGCGAAGAGAAGAGGCGGAGAAGACGCCCTGCTTCCGCTTGAGAAGGAACCTGGCCGCCTACGAG
ATGGAGGAGGGAAGGAGGATAAGAAGGGCTGCCGAGAGGGCCAAGGCGATGGAGAACGTCGAGTCGGCCGGCAAGGTACA
AGGCAAGGGGAAGAACGTGTCACCACAGGAGGCGAGAATGGAGAAGGAGAAGATGAGGAAGGACAAGAAAGAAGAGGAGA
GGCTCAAGGCGAAGGTTGAGAAGGAGAGGAAGAAGCGCGAGGAGGAGGCCAAGAAGAAACGAGAAAGAGAGGCCAAAGAG
AAGGAGATGGAGAGGAAGAGGAAAGAGGCGTCCAAGAAGAGAAAGACCGCCAAGGGAAAATGA-----------------
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>chr2B_1_TraesCS2B01G187900
GCGGCAACGCCAACAGCGAGAGAGGGAGGCAGCGATGGCGTCGCAGGGAGGTGCGGACATGGGCTTGCTTGCAGATAAGA
AGAAGGAGATCAACGACCGTAGGGAGTACGAGGCGGCAAGGGCGGTTGCGGCAGCGGCAGTGGAGCATGCTGCTAGGATG
CAGGCGGAGTAGGACGCAAGCATGGGCTCAGAGCAGGCGGCTTGGATGTCGTCCGGCCAGTGATCCGACAAGCGAGCCAT
CGTCACGTTCAGATATGGATTTCATTTTGGCATGTCCGGTTTGTTGAATTATGATTTGCTTTGATTTGTTTCGAACTGTT
GAATTCGGACAATTTGTATCATATGATCTAAGTGCATGAATTGCATGGATTTGAGGATTGACATTTGAGATCTATGGATG
TGCGGCGCAACATATATGGGCTGGCGGGCGTTGTCCGTAGACGCGCCCGGACGCGCCTGTG-------------------
--GGCGTGTAGGGGACCGGATTTGTCAAAGTCGGTTGTAGATGCTCTCATGGAGCCAATATTTTCTCCATTAGACAAC--
---------------GGTAATAATGTTCGCAGAACACTGGTAGAAAGTTATTCGAAGAGTCAGACTGGCCCATCCTAGCC
CAACTCAACGTTTGTATTCACAGCTCACTTTTCTTTAGACCAAATCACCGGTTACACCTCATACGCCGTTGCAGTGAGAA
AATAGAAAAGGAAGAATCATCACCCAACATAAA-CTGCATATTCTCGCCGTTTGGCAACACTAGGAGTACGT-TTGTACG
TGCATGCAACCCTGAACGAGTCTACGGCCGGCAGTCTAGCTAGATA----CCATT-------------------------
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---------------------------------------------------AATATGGATCGGACGACAATTAACCTCGT
AATCCCCGTCAATGACAACGACTTTGAGACTCATCACAGAGACCAGCACGGCCC------ATATATAAGCAAGAAACTTG
CTTCTACAGCAGATCGATGTTAGATTAGCCACCATTAGC----AGTGCAACTGAGCATTAGTCCTCAAAGAGCTAATTCA
TCGCATCACCATGTGCTGGCTCACAGCTAGACGGCGACGTCAGGCCGAAGAGGAGCGCCGGAGACTGGTGATGAGGCAAA
GAGAAGAGGCGGAGAAGCGAAGAGAAGAGGCGGAGAAGACGCCCTGCTTCCGCTTGAGAAGGAACCTGGCCGCCTACGAG
ATGGAGGAGGGAAGGAGGATAAGAAGGGCTGCCGAGAGGGCCAAGGCGATGGAGAACGTCGAGTCGGCCGGCAAGGTACA
AGGCAAGGGGAAGAACGTGTCACCACAGGAGGCGAGAATGGAGAAGGAGAAGATGAGGAAGGACAAGAAAGAAGAGGAGA
GGCTCAAGGCGAAGGTTGAGAAGGAGAGGAAGAAGCGCGAGGAGGAGGCCAAGAAGAAACGAGAAAGAGAGGCCAAAGAG
AAGGAGATGGAGAGGAAGAGGAAAGAGGCGTCCAAGAAGAGAAAGACCGCCAAGGGAAAATGATGATGGAATGTTGCTTG
ATCACGGTAAACATTGGTCCATTGTATATCTCTTGTTTCTGTGGCCTGCACTCATGACAGGAAGTTTTTTGTTAATTTCC
TTTGAAACCACGTCCCATTTTAAACCCCGTGCTATCACGGGAAGTGTTGTAAACTGATTGAGCTTGTGTGCTTGTGACAT
CAGGGAGCTTTTTAGTGTGACTAAGTACTA--------------------------------------------------
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------------------------------------------------------------------AGTACGACACTCGG
TCACCTTGTTTTTTCATACGGTGCACACGCCCTAAGAAACATTTCTACTTCTAACTTGGCAGTTAGAAAGACTTTTTTTT
TGTGTGGGTAGCAGTTAGAAAAACTTGCTCAGTATATATGTTTTATTGTACTCGTGCAGATCTGACAAGATAACTAAGAA
ACATTGAGTAGGGCATTTTCGAGACCGAGCTCCATGGAAGCGTTAATTTTGAAAAATTCAAAGTTCAAACTTTTCACTTA
AAAAACTTTAAAAATAAACATATATACAAAGTTGTAATGTTTATGCATTTAAAATTTCAGGATGAGCGGAGGAAGACATG
ACGAGTGCCTTTCCTGCTGCGGTTGGTGCAGAAGAAGCTGAAGAAGCAAGTGTCACACAATTGTGATCTTTTTTTTCTTC
AAAAGTACGTCTAGTTGTATCATATTTTTATAGAAGTCAGAAGTCAAATACAAGAGGCTACAACTCGGTGCGAAACCCCT
GAGTGAAACAAACGATTTATGGAAGTCAGAAGACAAGTACAAGAGACTACAACTCGTGTGCGAAACCCCTGAGTGAAACA
AACGATTAGCTACCGCAAGAAATACAAACACAACACAAAAGAGCCTGCCATAAACAGATCGTCAAGCCGCATCTCGATCA
ACACCAGACACCTAAGAGCAACAATTTCAACCGAGTTTTCCTTGTTGACGCCTGCGTTCAAATCTGTAACAAGAATTGAC
ATCGTTCACCAATTACTTTTGTCAAAAATAAATACTTTGCCTTTTCGATAGACGAAAAG
>chr2D_1
GCGGCAACACCAGCAGCGAGAGAGGGAGGCGGC---GGCGTCGCAGGGAGGTGCGGATATGGGCTTACG----GATAAGA
AGAAGGAGATCAACGACCGTAGGGAGTACGAGGCGGCAAGGGCGGCTGCGACAGCGGCAGCGGAGCATGCAACAAGGATG
CAGGCGGAGCAGGACGCAAGCATGGGCTCGGAGCAGGCATCATGGATGTCGTCCGGCCAGTGATCCGACAAGAGAGCCAT
CGTCACGTTCGGACATGAATTTCATTTTGGCATGTCCGGTTTGTTGAACTATGATTTGCTTTGCTTTGTTTCGAAATGTT
GAATTCGGACAATTTGTATCGTATGATCTAAGTGCATGAATT---------TGAGGATTAGCATTTGAGGTATATGGATG
TGCAGGCCAACATATGAT------------------------------GGACGCGCTCGTG-------------------
--GGCGTATAGGGGACCGAATTTGCCAAGTCAGC-TGTAGATGCTCTTATGGAGCAAATATTTTCTCCATTAGACAAC--
---------------GGTAATAATGTTTGCAGAACACTGGTAGAAAGTTACTCGAAGGTTCAGACTGGCCCATCCTAGCC
CAACTCAACGTTTGTATTCACAGTTCAGTTTT-TTTAGACCAAATCACCGGTTACACCTCATACCCCGTTGCAGTGAGAA
AATAGAAAAGGAAGAATCATCACACAACATAAAACTGCATATTGTCGCCGTTTGGCAACTCTAGGAGTACGCATTGTACG
TGCATGAAACCCTGAACGAGTCTACGGCCGGCAGTCTAGCTAGATA----CTACTCCCTCTTTCTAAAATATAATACGCC
CGTGTTTTTCGAGGTTCAGTTTTGATCATAAATTTAACCAACAAGACTGACTTTGGCGGAAGCAAAAATTATATAATTGA
AAACTTCTTTTAAATGCGAATTCATTGGTATAACTTTTGTTTCCGCCGCAGTTGGTCTCGTTGGTTAAATTTATAGTCGA
AGTTGAAGCACAGAAACCGAGGATGCACTATATTTTGAAAGGGGGAGTATGAATATCGATGGGACGACAATTAACCTCGT
AATCCCCGTCGCTGACAACAACTTTGAGACTCATCACAAAGACCGGCACGGCCCATATATATATATAAGCAAGAAACTTG
CTTGTACAGCAGATCGATGTTAGATTAGCCACCATTAGC----AGTGCAACTGAGCATTAGTCCTCAAAGAGCTAATTCA
TCGCATCCCCATGTGCTGGCTCACAGCTAGACGACGACGTCAAGCCGAGGAGGAGCGCTGGAGACAGGTGATGAGGCAAA
GAGAAGAGGCGGAGAAGCGAAGAGAAGAGGCCGAGAAGACGCCCTGCTTCCGCTTGAGAAGGAACCTGGCCGCCTACGAG
ATGGAGGAGGGAAGGAGGATAAGAAGGGCTGCCGAGAGGGCCAAGGCGATGGAGAACGCCCAAGCGGCCGGCAAGGTACA
AGGGAAGGGGAAGAACGTGTCACCACAGGAGGTGAGGATGGAGAAGGAGAAGATGAGGAAGGAGAAGAAAGAGGAGGAAA
GGCTCAAGGCGAAGGTTGAGAAGGAGAGGAAGAAGCGCGAGGAGGAGGCCAAGAAGAAACGAGAAAGAGAGGCCAAAGAG
AAGGAGATGGAGAAGAAGAGGAAAGAGGCATCCAAGAAGAGAAAGATAGCCAAGGGAAAATGATCTTGGAATGTTCCTTC
ATCACGGTAA-CATTGGTCCATTGCATATTCATTGTTCCTATAGCCTGCACTCATGACAGTATGTTCTTTGTTAACCTCC
T---------------ATTTGAAACCGTGTGATATCACGGGAAGTGTTTTACATTGATTGAGCATGTCTGATTGTGACAT
CAAGGAGCGCTTCAGTGTGACTAAGTACTCAGTACATTGGCGGACCCAGAGGGTGTGCCGTGGTACACCCAGCATTTTAC
AGATTTTTTCACTATATGTCATCTTTTTCTGATTTTATTGATTTTACAGTACTAGAACTAATTCATCTGAAGCTGTATAC
GTACATGCGAACCTAGCAAACCGTAGAAGCAGCTCGACTTTTTTTCTACTAGCAGCACTATGTGTGTGTCCAGCTAAAGA
CTCCTGTACACATACATGAGCCCGGTAGAAGCTAGCTAGATCAATTCCATCGATCAATGTTGGCAAAAAAATCAACCCTA
GCAGCGACTCGTGTAGATTGCAAACAGAAAAAACGAAAAAAATTAGGACTCTTCGGTCTGCCCCGTTATTTCTTGAGACA
ACTTCGACCTATCATGTGCTATTTTCAACGTTTTTCTTTTTGTGAAAAGGATCAAATCAACTATAAAGGTTCACTGGAAG
TACAAAACACCTCAAGCATAATAAAAATTACATCGAGATCCATGGACCACCGAACGACCAGTGCCGCCGACGCGCCGCTG
TCGTCGCTCCCCTACCGGAGACGGCCTGATCTTGTCGATGACAGCCGGGAAGTCTTCGTGCACGTGCCAGGAAGTCTCCC
CGAGGAGCTGGCAGGAATCTACGCCGGAGCTCCGTCTAATCCGTCCCAACGAACGAAGTTGAGGAGGATTGGAGCCCGGA
AGACTGACTCGAAGAAGAAACGCCATCATTCGTCTGAACGCCGCCCCTGCGAGGACTAAAATCCTACCTATCTACTAGCC
GGATTCGACACATCAGAAATCCCCTCCCTGCCACCGGCCGCCGGAGCGGCAGGCGGAGAGAAGGCGAATCCACGTACTCG
CTGGTGAATCGAGGGGGGGAAGGCTTTCCCTAATTGCCCTGCGAGAGGGAAAAAAAACTAGGTATAACGAGATTTGATAC
TTCCTGCCGTCCACGTCCGCCGTTCCTGCATCTCCGTACTGGTCCTAGCTCAAGTGTATTTCTTCTTTTCAATATTTACA
GACGCTCGTGAATCTTCCATGCCTATTTAATGCATCAAATCCCGAGACGGTACTCAACCGCCCATATATAGAGTGCATTC
GCGCTCGAGCGCAGAAACACCACGTCCGATTGGTAGTATTATCTCCATTTTGTTGAAAACATGAGGTCAAATAAAGAAGG
TTGCAGCTGAAGGGCAAACCGAAGTTATTCTTGTGTATCTTTCATGTAATACTATTTGTATTGTAATTTCGCAAATTTGA
AATTATTTTCTAAAACATAATATTGTGAGACTTGATTGAGCTATTTGTGTTATTCTTTTGCCATACATGATATGACACTT
AGACTAGGCAGATTTTTTTTGAAGTGTGCACACCCTCCATTTTTTTCCTAGGTCCGCCACTGACTGAGTACAACACTCAG
TCACCTGGTTTTTTCGTACGGCGCACACGCCCTAAGAAACATTTCTACTTTCAACCTCACAGTTAGAAAAGACTT-----
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>chr2A_270
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-----------------------------GCATGTCCGGTTTGTTGAAATATGATTTGCTTTGTTTTGTTTCGAACTGTT
GAATTCAGACAATTTATATCGTATGATCTAAGTGCATGAATTGCATGGATTTGAGGATTGGCATTTGAGGTATGTAGATG
TGCCGGGCAACATATGAT------------------------------GGGTCGACGGACGTTGTCCGCAGACGAGCCCG
CAGGCATATAGGGGACCGGATTTGCCAAGTCTGT-TGTA------CTTATGGAGCCAATATTTTCTCCATTAGACAACCA
AGAATGTTAGACAACGGTAATAATGTTTGCAGAACACTGGTAGAAAGTTACTCGAAGGCTCAGACTGGCCCATCCTAGCC
CAACTCAACGTTTGTATTCA-----CAGTTTT-TTTAGACCAAATCACCGGTTACACCTCATACGCCGTTGCAGTGAGAA
AATAGAAAAGGAAGAATCATCACACAACAT-AAACTGCATATTCTCGCCGTTTGGCAACACTAGGAGTACGT--------
-GCATGCAACCCTGAACGAGTCTACGGCCGGCAGTCTAGCTAGATATATACCATT-------------------------
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---------------------------------------------------AATATCGATGGGACGACAATTAACCTCGT
AATCCCCGTCACTGACAACGACTTTGAGAATCATCACAGAGACCAGCACGTCCC------ATATATAAGCAACAAACTTG
CTTGTACAGCAGATCGGTGCTAGATAAGCCACCATTGATTGGTAGTGCAATTGAGCATTAGTCCTCAAAGAGCTAATTCA
TCGCATCACCATGTGCTGGCTCACAGCTAGACGGCGGCGTCAGGCTGAGGAGGAGCGCCGGAGACAGATGATGAGGCAAA
GAGAAGAGGCGGAGAGGCGAAGAGAAGAGGCGGAGAAGACGCCCTGCTTCCGCTTGAGAAGGAACCTGGCCGCCTACGAG
ATGGAGGAGGGAAGGAGGATAAGAAGGGCCGCCGAGAGGGCCAAGGCGATGGAGAACACCGGGGCGGCTGACAAGGTACA
AGGGAAGGGGAAGAACGTGTCACCACAGGAGGTGAGGATGGAGAAGGAGAAGACGAGGAAGGAGAAGAAAGAGGAGGAGA
GGCTCAAGGCGAAGGTCGAGAAGGAGAGGAAGAAGCGCGAGGAGGAGGCCAAGAAGAAACGAGAAAGAGAGGCCAAAGAG
AAGGAGTTGGAGAAGAAGAGGAAAGAGGCGTCCAAGAAGAGAAAGACCGCCAAGGGAAAATGATGTTGGAATGTTGCTTG
ATCACGGTAA-CATTGGTCCATTGCATATTTATTGTTCCTATAGCCTGCACTCGTGACAGGATGTTTTTTGTTAACCTCC
T---------------ATTTGAAACCGTGTGATATCATGGGAAGTGTTGTACATTGATTGAGCATGTCTGATTGTGACTT
CAGGGAGCGTTTCAGTGTGACTAAGTAT----------------------------------------------------
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----------------------------------------------------------------TGAGTACAACACTCAG
TCACCTGGTTTTTTCGTATAGTGCACATGCCCTAAGAAACATTTCTACTTTCAACCTCACAGTTAGAAACGACTT-----
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>SNPs
--------S---S-----------------S--SSS---------------------S--------S-SSSSS-------
---------------------------------------------S----S---------S---------SS-S------
---------S-------------------S--------SS-S------------------------------S-------
----------S--S---S------------------------------S--------------S----------------
--------------------S---------------------------------------S--------S-S--------
---S-S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS----------------------
-------S----------------S---SSSS-SS------------S--------------------------------
---------------------------S----------------------S------SS---------------------
-----------------------S---S----S-----------------------------------------------
-----------------------S--------------------------------------------------------
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--------------------------------------------------------S---S-------------------
-----------S--------------------------------------------------------------------
---S----------------------------------------------------------------------------
------------------------------------------------S----------------S--------------
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----------------------------------------------------------S----S----------------
---S----------------------------S---S--------------------------S--------S-------
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-------------S---------------------------------------------------S--------------
----------S-------------S----S-S-----S--S-S-------------------S------------SS---
-SSSSSSSSSSSSSSS----S-----SS---S-------------------S-S---------S---S--S---------
--------S---S----------------S--------------------------------------------------
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-----------------------------------------------------------------------S------S-
------S--------S----------------------------------SS---S-SS----------SSSS--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_428
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--------AACATATATGGGCTGGCGGG----------------------------------------------------
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>reverse_1792
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-------------------------------CTTGTTTCTGTGGCCTGCAC-----------------------------
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