>input_sequence_79806
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-----------------------------------------------------------------------------ATG
ACTACTGTCCGAGTTCTTCTTACAGTTGCCCTGGTCATCTCCCTGCTCGCCCTTGGCC---ATCATCCTCTCGCTCATGC
TCGCCACGGTGAGTCTAATTTTTCTTTCCTTA-TTGCATTCTTCATCTCAAGTTCGTACTACCATTTATTCA--------
---------------------------------------------------------------------GTCACAAGTAG
TAGTATTGTTGATCTCACCAGCTGCTCATATGTTGCTTCTCGCAGTGAAGGACC---CGTCCATACCAACCGGTGATTCC
TCGTCTGTAAAGAAAGGATTACAGCAAGGGAGCAACATGAAGCTCGATGCCGGGAAGACGAAGAAAGTTGAAAACGTGAG
AGTGGAGGAGACACCAAAGGGATCTGTTGAACCAAGCTTTGGCAACCGGGGGAGCCTTGGTGCTGAGTCTGATAAGGTGG
CCGTGCTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAACACAACTAA------------------------
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>chr4D_1_TraesCS4D01G293100
TCATCGAGCAGGAAGGGGAGCTCGGAGCCGATGTGTATGGATTGACGTGGCACACCTGATCTTCTCTAAATTTCTGTGGA
TTTTCTCATCGGTCGAGAGAGGTCGTAGGATTTTATGGCGGCTAAAAAAATAAAATGGGGTAAAA-TGTGTCACAAACTT
GCCTAAATTGGGTATAAATGTGCATTCTGGGGGTAAAAAATGGAATTCACTCTACTACGTACTCCTACTAAAAATGACCC
ACCGCCACCTTTG-CAGCTGCAGTGGTTACAAATTTGCCCTTCCTCCTTTCTTCGTTGGAATTTGGGAACCGGCTTCTGT
TAGATTCCTGAAACGCATAATTTTTAAAACTCTCTTAATTTGAAGGTTGATTGGATTCCTGAATGCTTAAATTTTAAAAC
TCACTGGAGGGTCGCA-------AGTTGCCTAGGAACAAAGGATCTTGGTCTTATGTGTGGCACGGGACCGGGAGATAG-
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----ATCAAAGCGATGTGAAACTGGCGTTAAAATACTGGCGCCGTGG--CGCACCGTCATACCT--TCTCGCCTGTGGCG
CCGATGTGTCGGGAGTCCAACAGGGAGCTCTTTTTCTGCAATTTAACTGCAGGGAGCTCGGATCCCCAAAGGCAGCCACT
GCTTGGCACACCCCGACGGTCAGAAGCCACACGTGATGCATCA---------------GCGCGTGCATGCTGCGTGGTCC
TCTGAGCAGCTCTATATTTTGTACTAAAAAAGAGAGAAAGCTTACCCTCGTAGGGCTTGTTAAACCACACCGGGTACGGA
TGGCGGCAGATGTTCTATACTTCTATATAACAG-TTGTAAGAAATCTGAGCTTTGACCGCCCAGCTAGCAGCTAGTCATC
GATCTATATCTGACTACCAGTGTTTAAACTAACAAGCATTCTTCTATAAGAACCCAACAAGCCTCAGCCTCCCTCCTCTC
TTCATCC-CCTTGC--CATCACCCCTTCACCAGCCCACCAAGATTTACCGGCCGTCGACAGTTAATTGGAGTTCACCATG
ACTACTGTCCGAGTTCTTCTTACAGTTGCCCTGGTCATCTCCCTGCTCGCCCTTGGCC---ATCATCCTCTCGCTCATGC
TCGCCACGGTGAGTCTAATTTTTCTTTCCTTA-TTGCATTCTTCATCTCAAGTTCGTACTACCATTTATTCA--------
---------------------------------------------------------------------GTCACAAGTAG
TAGTATTGTTGATCTCACCAGCTGCTCATATGTTGCTTCTCGCAGTGAAGGACC---CGTCCATACCAACCGGTGATTCC
TCGTCTGTAAAGAAAGGATTACAGCAAGGGAGCAACATGAAGCTCGATGCCGGGAAGACGAAGAAAGTTGAAAACGTGAG
AGTGGAGGAGACACCAAAGGGATCTGTTGAACCAAGCTTTGGCAACCGGGGGAGCCTTGGTGCTGAGTCTGATAAGGTGG
CCGTGCTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAACACAACTAAGGCACTGTCCGGAATGGGTGAA-T
TTTTTGGTGACCATATATCGGTACTTAGCTCAAAGTTGAACCAACTACCGGTGACCCTACAAGCTTTGCATCCAGTGTCC
AGCAGTCCCTAAGTATGTGTACATATAGTTAGCTAGCTAGTTTGCTTTTTAGTTGATCTTGTTATATTTATTATCTGATT
TAGAGCAGTGGTAGTTCTCTTTCTTGCATGTTTCCCCTGCCCCTCTCTAGCTAGTTTCTAGGTGAAATTTTGGCTAGGAA
ACGGAGATCCGA-----------CTCCACTGAGCATACTGTACTATAGCTGCCTACTGTCAAATTAAATACCACACTTTT
TCCATATATACACATTTTATTCTTCTACTTTTGAAGGGTCAAA--------GGATGCATTAAGCCAAAGGAAATTTTAAC
ACGTGTTCCTCTTTTTTTTTTTGAAGTTTTTTCTTA----ACACAAGATCGGATGGTCACAGTTGCAAAA----AAA---
-GGCAAACTGTACACAAAAAAATCTTACCATCTATTCACAAAAATGTGATTTTCAAAACTTTTATTAAAGTTGGTACGAA
CCGACTGACACGGATTGCACATA-----GTGCAACCAACTCAGGCGGCTTTCATGCCGGGCAGACACATACTAGAGGGCG
TTGTCGTCCTACATGAAGCACTATGAAATCCACTCGAAAAAACTGGATGGGGTAGTTTTCAAAGTAGACTTCGAGAAGGC
GTATGATAAGGTTAAATGACCCTTCCTCTAGCAGGCCTTACATATGAAGGGATTCGACAATTCCTGGAGGAAACAAGTCA
AGTCATTTGTGCAAAAAGGCAGCATAGGGATTAAAGTGAATGATGAAACATGTTATTATTTCCAGGCGCAAAAGGACCTA
AGACAGGGAGACTCAATGTCTCCTATCTTGTTCAACATAGTGGCGGATATGTTGACAATTCTTATTGGTAGGGCCAAAGA
GGATGGGCAAGTAGGCGGACTCGTACCCCATCTTGTGGATGGGGGTTGTTCAT
>chr4A_9
--------CAGGAAGGGGAGCTCGGAGCCGATGGGTATGGATCGACGTGGCACACCTGATCTTCTCTAAATTTATGTGGA
TTTTCTCATCGGTCGAGAGAGGTCGTAGGATTTTATGGCGGCTAAAAAAATAAAATGGGGTAAAAATGTGTCACAAACAT
GCCTAAATTGAGTATAAATGTGAATTCTGAGGGTAAAAAATGGAATTCACTCTACTACG------TACTAAAAATGACCC
ACCGCCACCTTTCACAGCTGCAGTGGTTTA---------------------TTCGTTGGAATTCGGGAACCGGCTTCTGT
CAGATTCCTGAACTGCATAGTTTTTAAAACTCTTTTGTTTTGAAGGTTGGTTGGATTCCTCAATGCTTAACCTTTAAAAC
TCACTCGAGGGTCGCA-------AGTTGCCTAGGAACAAAGGATCTTGGTCTTATGTGCGGCGCGGGACCGGGAGATAGG
TACTCCTTCCGTTCTAAAATAGATAACCCAACTTTGTACTAATTTTAGTATAAAGTTGGGTCATCTATTCTGGAACGGAG
ATAGATCAAAGCGATGTGAAACTGGGTTTAAAAAACTGGCGCCGTGGCACGCACAGTCGTACCTTCTCTCGCCTGTGGCG
CCGATGTGTCGGGAGTCCAACAAGGAGCTCTTTTTTTGCAATTTAACTGCAGGGAGCTCGGATCCCCAAAGGCAGCCACT
GCTTGGCACACCCCCACGGTCAGAAGCCACACGTGATGCATCA---------------GC----------TGCGTGGCCC
TCTGAGCAGCTGCACTAGT--------AACAGAGAGAAAGCTTACACTCGTAGGGTTTGTTAAACAACGCC---------
--GCGGCAGATGTTCTGTACTTGTATATAACAGTTTGTAAGAAATCTGAGCTTTGACCACCCAGCTAGCAGCTAGTCATC
GATCTGTATCTGACTACCAGTGTTTAAACTAACAAGCATTCTTCTATAAGAGCCCAACAAGCCTCGGCCTTCCTCCTCTC
TTCACTCTCCTTGC--CATCACCCCTTCACCAGCCCGCCAAGATTTACCGGCCGTCGACAGTTAATTGGAGTTCACCATG
ACTACTGTCCGAGTTCTTCTTGCAGTTGCCCTGGTCATCTCCCTGCTCGCCCTTGGCC---ATCCC---CTTGCTCATGC
CCGCCATGGTGAGTCTCATTTTTCTCTTCTTATTTGAATCGTTCATCTCAAGTTTGTATTACTCCCCGCCAAGATTTCCT
TATTTTCATTATTCATCTCAAGTTTGTATTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACATTGTCACAATTAG
TAGTATTGTTGATCTCACCAGCTGCTCATATATTGCTTCTCGCAGTGAAGGACCTGTCGTCCATGCCAACCGGTGATTCC
TCGTCTGAAAAGAAAGGATTACAGCAAGGGAGTAACATGAAGCTCGATGCCGGGAAGACGAAGAAAGTTGAAAACGTCGG
AGTGGAGGAGACACCTAAGGGATCTGCTGAACCAAGCTTCGGCAACCGGGGGAGCCTTGGTGCTGAGTCTGATAAGGTGG
CCGTGTTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAACACAACTAAGGCACCGTCCGGAATGGGTGAAAT
TTTTTGGTGACCATATATCAGCACTTAGCTCAAAGTTGAACTAACTACCGGTGACCCTACAAGCTTTGCATCCAGT--CC
AGCAGTCCCTAAGTATGTGTACATATAGTTAGCTAGCTAGCTTGCTTTTTAGTTGATCTTGTTATATTTGTTATCTGATT
TAGAGTAGTGGCAGTTCTCTTTCTTTCATGT-------GCCCCTCTCTAGCTAGTTTCTGGGTGAAATTTTGGCTAGGAA
ACGGAGATCCGAGTATCCGACTACTCCACTGAGCATACTGTACTATAGCTGCCTACTGTCAAATTAAATACCACACTTTT
TCTATACATACACAGTTTATTCTTCTAC-TTTGAAGGGTCAATGCCTCAATGGATGCATTAAGCCAAAGGAAATCTTAAC
ACATGTTCTC---TTTTTTTTTGGAAGTTTTTCTTA----ACACAAGATCGGATGGTCACAGTTGCAAAAGAAAAAAAAA
CGGCAAACCATACACAAAAAAATCTTACCATCTATTCACACAAAA-----------------------------------
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>chr4B_175
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---------------AAAAGTGAACTCTAGGGGTAAAAAATGGAATTCACTCTAC----------TACTAAAAATGACCC
ACCACCACCTTTG-CAGCTGCAGTGGCTACAAATTTGCCCTTCCTCCTTTCTTCGTTGGAATTTGGGAACCGGCCTCTGT
TAGATTCCTGAAATGCACAGTTTTTTAAACTCTCTTTCTTTGAAGGTTGGTTCGATTCCTGAATGCTTAACTTTTAAAAC
TCACTCGAGCTCGAGGGTTGCAGAGTTGCCTAGGAACATATGATCTTGGTCTTATGCCTGGCCCGGGACAGT--------
------------------------------------------------------------------------------AG
ATGGATCAAAGCGATGTGAAACTGGGATTAGAAAACTGGCGCCGTGGCACGCACAGTCGTACCT--TCTCGCCTGTGGCG
CCGATGTGTCGGGAGTCCAACAGGGAGCTCGGATCCCAAGAGGG-----------------------------AGCCACT
GCTTGGCACACCCCCACCGTCAGAAGCCACACGTTTTTACGCATCAGTGCAAGTGCATGC----------TGCGTGGCCC
TCTGAGCAGCTGCAGTAGT--------AAAAGAGAGAAAGCTTACACTCGTAGGGTTTGTTAAACAACACC---------
--GCGGCAGATGTTCTGTACTTGTATATAACAGTCTGTAAGAAATCTGAGCTTTGACCACCCAGCTAGCAGCTAGTCTTC
GATCTATATCTGACTACCAGTGTTTAAACTAACAAGCATTCTTCTATAAGAACCCAACAAGCCTCAGCCTTCCTCCTCTC
TTCACACTCCTCTCCTCATCACCCCTTCACCAGCCCACCAAGATTTACCGGCCGTCGGCAGTTAATTGGAGTTCACCATG
ACTACTGTCCGAGTTCTTCTTACAGTTGCCCTGGTCATCTCCCTGCTCGCCCTTGGCCATCATCCC---CTCGCTCATGC
TCGCCACGGTGAGTCTAATTTTTCGCTTCTTATTTGCACTGTTCATCTCAAGTTTGTAGTAACATTTATTCA--------
---------------------------------------------------------------------GTCACAAGTAG
TAGTGTTGTTGATCTCACCAGCTGCTCATATGTTGCTTCACGCAGTGAAGGACC---CGTCCATGCCAACCGGTGATTCC
TCGTCTGTAAAGAAAGGGTTACAGCAAGGGAGTACCATGAAGCTCGATGCAGGGAAGACCAAGAAAGTTAAAAACGTGGG
AGTGGAGGAGATACAAAAGGGATCTGCTGAACCAAGCTTTGGCAACCGGGGGAGCCTTGGTGTTGAGTCTGATAAGGTGG
CCGTGCTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAGCACAACTAAGGCACCGTCCGGAACGGGTGA-AT
TTTTTGGTGACCATATATCAGTACTTAGCTCAAAGTTGAACTAACTACCGGTGACCCTACAAGCTTTGCATCCAGT--CC
AGCAGTCCCTAAGTATGTGTACATATAGTTAGCTAGCTAGTTTGCTTTTTAGTTGAGCTTGTTATAGTTATTATCTGATT
TTGAGTAGTGGTAGTTCTCTTTCTTTCATGTTTCCCCTACCCCTCTCTAGCTAGTTTCTAGGTGAAATTTTGGCTAGGAA
ACGGAGATCCGA-----------CTCCACTGAGCATACTGTACTATAGCTGCCTACTGTCAAATTAAATACCACACTTTT
TCTATATATACACATTTTAGTCTTCTACTTTTGAAGGGTGAAA--------GGATGCATTAAGCCAAAGGAAATCTTAAA
CAC-GTTCCTTTTTTTTCTTTTTGAGGTTTTTCTTTATGTACACAAGATCGGATGGTCACAGTTGCAAAA----AAAAAA
TGGCAAACTATACACAAAAAA-TCTTACCATCTATTCCC-AAAATGTGATTTTCAAAACTTTTACTGAAGTTGGTACGAA
CCGACCGACGCGGACTCCACATGGTGTTGTGCAACCAACTCAGACGGCTTTCATGTCGGGCAGACACATACTAGAGGGTG
TTGTCGTCCTACATGA----------AATCCACTCAAAAAAACTGGATGGGGTTGTTTTCAAAGTAGACTTCAAGATGGC
ATATGCTAAGGTTAAATGACCCTTCCTCCAGCAGGCCTTACGTATGAAGGGGTTCGGCAATTCCTGGAGGAAACAGTTCG
AGTCATTTGTGCAAAAAGGCAGTGTAGGGATTAAAGTGAATGATTACACATGT---------------------------
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>SNPs
SSSSSSSS-------------------------S--------S------------------------------S------
------------------------------------------------------------------------------S-
----------S-----------S------------------------------------SSSSSS---------------
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-------------S-----S----------------SS-----------S--------------------S---------
-----S--------------------------------------------------------S-----------------
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-------------------------SS------S--------------------S---S---------------------
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--------------S---------------------------------------------SSSSSSSSSS-------S--
-----------SS-SSSS-SSSSSSSS------------------S---------S---------S-----SSSSSSSSS
SS--------------S-----S-----------------------------------S---------------------
----------------------------------------------------------------------S---------
----SS--------------------------------------------------------------------------
----------------------------------------------------------------SSSSS-----------
-------------------------S-S------------S-------------S---S---------------------
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----------------------------------------------------------------S---------------
--------------------------------S---------------------------------------------S-
--------------------------S-----------------------------------------------------
-------------------------------------------------------------S------------------
-------------------S---------------------S----------------------------------SS--
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-----S-------------------S------------------------------------------------------
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--S-----------------------------------------------------------------------S-----
--S-------S------------S--S-----------------------------------------------------
---------S------------------------------------------------------S-S-------------
-----S---S----S-S-----S--------------------S-----------S----------------------S-
----------------SSSSSSSSSS---------S-----------------S------------------S---S---
S----S----------------------S------------S---------S----S------------------SS--S
----------------------SS--------------------S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_897
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-----------------------------------------------------------------------------GGA
TGGCGGCAGATGTTCTA---------------------------------------------------------------
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>reverse_2648
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-------CAAGTAGGCGGACTCGTACC--------------------------
