>input_sequence_79763
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---------------------------ATGACTACTGTCCGAGTTCTTCTTACAGTTGCCCTGGTCATCTCCCTGCTCGC
CCTTGGCCATCATCCCCTCGCTCATGCTCGCCACGGTGAGTCTAATTTTTCGCTTCTTATTTGCACTGTTCATCTCAAGT
TTGTAGTAACATTTATTCA-------------------------------------------------------------
----------------GTCACAAGTAGTAGTGTTGTTGATCTCACCAGCTGCTCATATGTTGCTTCACGCAGTGAAGGAC
C---CGTCCATGCCAACCGGTGATTCCTCGTCTGTAAAGAAAGGGTTACAGCAAGGGAGTACCATGAAGCTCGATGCAGG
GAAGACCAAGAAAGTTAAAAACGTGGGAGTGGAGGAGATACAAAAGGGATCTGCTGAACCAAGCTTTGGCAACCGGGGGA
GCCTTGGTGTTGAGTCTGATAAGGTGGCCGTGCTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAGCACAAC
TAA-----------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G294200
ACTCTCACATGTGGCTTCCTTAGGCCTAAACGTGAACCGAAAGTAGGTTGCAATTTTTTTTATTTTTAAATTGCGCCAGC
CGGGTCTTGAACCTGCCAATTCACCCAAAATTTCAAACTAGTGAGGAAATGTAGCTTATGCATTTATACTTCAACAAACT
TGCGTAAATTAAGTATAAATTGCAAATTTTTGCTAAATGGGGTAATATCTATCACAAAAGTGAACTCTAGGGGTAAAAAA
TGGAATTCACTCTAC----------TACTAAAAATGACCCACCACCACCTTTGCAGCTGCAGTGGCTACAAATTTGCCCT
TCCTCCTTTCTTCGTTGGAATTTGGGAACCGGCCTCTGTTAGATTCCTGAAATGCACAGTTTTTTAAACTCTCTTTCTTT
GAAGGTTGGTTCGATTCCTGAATGCTTAACTTTTAAAACTCACTCGAGCTCGAGGGTTGCAGAGTTGCCTAGGAACATAT
GATCTTGGTCTTATGCCTGGCCCGGGACAGTAGATG-G------------------------------------------
-------------------------------------------ATCAAAGCGATGTGAAACTGGGATTAGAAAACTGGCG
CCGTGGCACGCACAGTCGTACCT--TCTCGCCTGTGGCGCCGATGTGTCGGGAGTCCAACAGGGAGCTCGGATCCCAAGA
GGG-----------------------------AGCCACTGCTTGGCACACCCCCACCGTCAGAAGCCACACGTTTTTACG
CATCAGTGCAAGTGCATGCTGCGTGGCCCTCTGAGCAGCTGCAGTAGT--------AAAAGAGAGAAAGCTTACACTCGT
AGGGTTTGTTAAACAACACC-----------GCGGCAGATGTTCTGTACTTGTATATAACAG-TCTGTAAGAAATCTGAG
CTTTGACCACCCAGCTAGCAGCTAGTCTTCGATCTATATCTGACTACCAGTGTTTAAACTAACAAGCATTCTTCTATAAG
AACCCAACAAGCCTCAGCCTTCCTCCTCTCTTCACACTCCTCTCCTCATCACCCCTTCACCAGCCCACCAAGATTTACCG
GCCGTCGGCAGTTAATTGGAGTTCACCATGACTACTGTCCGAGTTCTTCTTACAGTTGCCCTGGTCATCTCCCTGCTCGC
CCTTGGCCATCATCCCCTCGCTCATGCTCGCCACGGTGAGTCTAATTTTTCGCTTCTTATTTGCACTGTTCATCTCAAGT
TTGTAGTAACATTTATTCA-------------------------------------------------------------
----------------GTCACAAGTAGTAGTGTTGTTGATCTCACCAGCTGCTCATATGTTGCTTCACGCAGTGAAGGAC
C---CGTCCATGCCAACCGGTGATTCCTCGTCTGTAAAGAAAGGGTTACAGCAAGGGAGTACCATGAAGCTCGATGCAGG
GAAGACCAAGAAAGTTAAAAACGTGGGAGTGGAGGAGATACAAAAGGGATCTGCTGAACCAAGCTTTGGCAACCGGGGGA
GCCTTGGTGTTGAGTCTGATAAGGTGGCCGTGCTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAGCACAAC
TAAGGCACCGTCCGGAACGGGTGAA-TTTTTTGGTGACCATATATCAGTACTTAGCTCAAAGTTGAACTAACTACCGGTG
ACCCTACAAGCTTTGCATCCAGT--CCAGCAGTCCCTAAGTATGTGTACATATAGTTAGCTAGCTAGTTTGCTTTTTAGT
TGAGCTTGTTATAGTTATTATCTGATTTTGAGTAGTGGTAGTTCTCTTTCTTTCATGTTTCCCCTACCCCTCTCTAGCTA
GTTTCTAGGTGAAATTTTGGCTAGGAAACGGAGATCCGA-----------CTCCACTGAGCATACTGTACTATAGCTGCC
TACTGTCAAATTAAATACCACACTTTTTCTATATATACACATTTTAGTCTTCTACTTTTGAAGGGTGAAA--------GG
ATGCATTAAGCCAAAGGAAATCTTAAACAC-GTTCCTTTTTTTTCTTTTTGAGGTTTTTCTTTATGTACACAAGATCGGA
TGGTCACAGTTGCAAAA----AAAAAATGGCAAACTATACAC-AAAAAATCTTACCATCTATTCCC-AAAATGTGATTTT
CAAAACTTTTACTGAAGTTGGTACGAACCGACCGACGCGGACTCCACATGGTGTTGTGCAACCAACTCAGACGGCTTTCA
TGTCGGGCAGACACATACTAGAGGGTGTTGTCGTCCTACATGA----------AATCCACTCAAAAAAACTGGATGGGGT
TGTTTTCAAAGTAGACTTCAAGATGGCATATGCTAAGGTTAAATGACCCTTCCTCCAGCAGGCCTTACGTATGAAGGGGT
TCGGCAATTCCTGGAGGAAACAGTTCGAGTCATTTGTGCAAAAAGGCAGTGTAGGGATTAAAGTGAATGATTACACATGT
CGTACCCTGTCC--------------------------------------------------------------------
------------------------------------------------------------------------TTGTCCAT
ACTACAATACCTGAC-GACACTATTATTTTCATGGAACAAGATTTGACAAAGGCTAGAAATATGAAGCTTGTGCTATGCT
TGTTTGAGCAATTGTCG-GGTTGAAAATCAACTTCAACAA-AGTAAATTGTTCTGCTTTGGGAGA
>chr4D_216
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-------------------------------------------------------AAATGTGCATTCTGGGGGTAAAAAA
TGGAATTCACTCTACTACGTACTCCTACTAAAAATGACCCACCGCCACCTTTGCAGCTGCAGTGGTTACAAATTTGCCCT
TCCTCCTTTCTTCGTTGGAATTTGGGAACCGGCTTCTGTTAGATTCCTGAAACGCATAATTTTTAAAACTCTCTTAATTT
GAAGGTTGATTGGATTCCTGAATGCTTAAATTTTAAAACTCACTGGAGGGTCGCA-------AGTTGCCTAGGAACAAAG
GATCTTGGTCTTATGTGTGGCACGGGACCGGGAGATAG------------------------------------------
-------------------------------------------ATCAAAGCGATGTGAAACTGGCGTTAAAATACTGGCG
CCGTGG--CGCACCGTCATACCT--TCTCGCCTGTGGCGCCGATGTGTCGGGAGTCCAACAGGGAGCTCTTTTTCTGCAA
TTTAACTGCAGGGAGCTCGGATCCCCAAAGGCAGCCACTGCTTGGCACACCCCGACGGTCAGAAGCCACACGTGATGCAT
CAGCGC-----GTGCATGCTGCGTGGTCCTCTGAGCAGCTCTATATTTTGTACTAAAAAAGAGAGAAAGCTTACCCTCGT
AGGGCTTGTTAAACCACACCGGGTACGGATGGCGGCAGATGTTCTATACTTCTATATAACAG-T-TGTAAGAAATCTGAG
CTTTGACCGCCCAGCTAGCAGCTAGTCATCGATCTATATCTGACTACCAGTGTTTAAACTAACAAGCATTCTTCTATAAG
AACCCAACAAGCCTCAGCCTCCCTCCTCTCTTCATCC-CCTTGC--CATCACCCCTTCACCAGCCCACCAAGATTTACCG
GCCGTCGACAGTTAATTGGAGTTCACCATGACTACTGTCCGAGTTCTTCTTACAGTTGCCCTGGTCATCTCCCTGCTCGC
CCTTGGCCATCATCCTCTCGCTCATGCTCGCCACGGTGAGTCTAATTTTTCTTTCCTTA-TTGCATTCTTCATCTCAAGT
TCGTACTACCATTTATTCA-------------------------------------------------------------
----------------GTCACAAGTAGTAGTATTGTTGATCTCACCAGCTGCTCATATGTTGCTTCTCGCAGTGAAGGAC
C---CGTCCATACCAACCGGTGATTCCTCGTCTGTAAAGAAAGGATTACAGCAAGGGAGCAACATGAAGCTCGATGCCGG
GAAGACGAAGAAAGTTGAAAACGTGAGAGTGGAGGAGACACCAAAGGGATCTGTTGAACCAAGCTTTGGCAACCGGGGGA
GCCTTGGTGCTGAGTCTGATAAGGTGGCCGTGCTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAACACAAC
TAAGGCACTGTCCGGAATGGGTGAA-TTTTTTGGTGACCATATATCGGTACTTAGCTCAAAGTTGAACCAACTACCGGTG
ACCCTACAAGCTTTGCATCCAGTGTCCAGCAGTCCCTAAGTATGTGTACATATAGTTAGCTAGCTAGTTTGCTTTTTAGT
TGATCTTGTTATATTTATTATCTGATTTAGAGCAGTGGTAGTTCTCTTTCTTGCATGTTTCCCCTGCCCCTCTCTAGCTA
GTTTCTAGGTGAAATTTTGGCTAGGAAACGGAGATCCGA-----------CTCCACTGAGCATACTGTACTATAGCTGCC
TACTGTCAAATTAAATACCACACTTTTTCCATATATACACATTTTATTCTTCTACTTTTGAAGGGTCAAA--------GG
ATGCATTAAGCCAAAGGAAATTTTAACACGTGTTCCTCTTTTTTTTTTTGAAGTTTTTTCTTA----ACACAAGATCGGA
TGGTCACAGTTGCAAAA----AAA----GGCAAACTGTACACAAAAAAATCTTACCATCTATTCACAAAAATGTGATTTT
CAAAACTTTTATTAAAGTTGGTACGAACCGACTGACACGGATTGCACATA-----GTGCAACCAACTCAGGCGGCTTTCA
TGCCGGGCAGACACATACTAGAGGGCGTTGTCGTCCTACATGAAGCACTATGAAATCCACTCGAAAAAACTGGATGGGGT
AGTTTTCAAAGTAGACTTCGAGAAGGCGTATGATAAGGTTAAATGACCCTTCCTCTAGCAGGCCTTACATATGAAGGGAT
TCGACAATTCCTGGAGGAAACAAGTCAAGTCATTTGTGCAAAAAGGCAGCATAGGGATTAAAGTGAATGATGAAACATGT
TATTATTTCCAGGCGCAAAAGGACCTAAGACAGGGAGACTCAATGTCTCCTATCTTGTTCAACATAGTGGCGGATATGTT
GACAATTCTTATTGGTAGGGCCAAAGAGGATGGGCAAGTAGGCGGACTCGTACCCCATCTTGTGGATGGGGGTTGTTCAT
ACTACAATACGCTGATGACAATATTATTTTCGTGGAACGTAATTTGGCAAAGGCTATAAATATGAAGCTTGTGCTATGCT
TGTTTGAGAAATTGTCGAGGTTGAAGATCAACTTTAACAAAAGTGAAATTTTCTGCTTTGGGAGA
>chr4A_321
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----------TTCGTTGGAATTCGGGAACCGGCTTCTGTCAGATTCCTGAACTGCATAGTTTTTAAAACTCTTTTGTTTT
GAAGGTTGGTTGGATTCCTCAATGCTTAACCTTTAAAACTCACTCGAGGGTCGCA-------AGTTGCCTAGGAACAAAG
GATCTTGGTCTTATGTGCGGCGCGGGACCGGGAGATAGGTACTCCTTCCGTTCTAAAATAGATAACCCAACTTTGTACTA
ATTTTAGTATAAAGTTGGGTCATCTATTCTGGAACGGAGATAGATCAAAGCGATGTGAAACTGGGTTTAAAAAACTGGCG
CCGTGGCACGCACAGTCGTACCTTCTCTCGCCTGTGGCGCCGATGTGTCGGGAGTCCAACAAGGAGCTCTTTTTTTGCAA
TTTAACTGCAGGGAGCTCGGATCCCCAAAGGCAGCCACTGCTTGGCACACCCCCACGGTCAGAAGCCACACGTGATGCAT
CAGC---------------TGCGTGGCCCTCTGAGCAGCTGCACTAGT--------AACAGAGAGAAAGCTTACACTCGT
AGGGTTTGTTAAACAACGCC-----------GCGGCAGATGTTCTGTACTTGTATATAACAGTT-TGTAAGAAATCTGAG
CTTTGACCACCCAGCTAGCAGCTAGTCATCGATCTGTATCTGACTACCAGTGTTTAAACTAACAAGCATTCTTCTATAAG
AGCCCAACAAGCCTCGGCCTTCCTCCTCTCTTCACTCTCCTTGC--CATCACCCCTTCACCAGCCCGCCAAGATTTACCG
GCCGTCGACAGTTAATTGGAGTTCACCATGACTACTGTCCGAGTTCTTCTTGCAGTTGCCCTGGTCATCTCCCTGCTCGC
CCTTGGCCATC---CCCTTGCTCATGCCCGCCATGGTGAGTCTCATTTTTCTCTTCTTATTTGAATCGTTCATCTCAAGT
TTGTATTACTCCCCGCCAAGATTTCCTTATTTTCATTATTCATCTCAAGTTTGTATTACTCCCTCCGTCCCATAATATAA
GAGCGTTTTTGACATTGTCACAATTAGTAGTATTGTTGATCTCACCAGCTGCTCATATATTGCTTCTCGCAGTGAAGGAC
CTGTCGTCCATGCCAACCGGTGATTCCTCGTCTGAAAAGAAAGGATTACAGCAAGGGAGTAACATGAAGCTCGATGCCGG
GAAGACGAAGAAAGTTGAAAACGTCGGAGTGGAGGAGACACCTAAGGGATCTGCTGAACCAAGCTTCGGCAACCGGGGGA
GCCTTGGTGCTGAGTCTGATAAGGTGGCCGTGTTTGCTCGCCGTGGAGAACCACCCAAGCCTCACCCGAAAAAACACAAC
TAAGGCACCGTCCGGAATGGGTGAAATTTTTTGGTGACCATATATCAGCACTTAGCTCAAAGTTGAACTAACTACCGGTG
ACCCTACAAGCTTTGCATCCAGT--CCAGCAGTCCCTAAGTATGTGTACATATAGTTAGCTAGCTAGCTTGCTTTTTAGT
TGATCTTGTTATATTTGTTATCTGATTTAGAGTAGTGGCAGTTCTCTTTCTTTCATG-------TGCCCCTCTCTAGCTA
GTTTCTGGGTGAAATTTTGGCTAGGAAACGGAGATCCGAGTATCCGACTACTCCACTGAGCATACTGTACTATAGCTGCC
TACTGTCAAATTAAATACCACACTTTTTCTATACATACACAGTTTATTCTTCTAC-TTTGAAGGGTCAATGCCTCAATGG
ATGCATTAAGCCAAAGGAAATCTTAACACATGTTCTC---TTTTTTTTTGGAAGTTTTTCTTA----ACACAAGATCGGA
TGGTCACAGTTGCAAAAGAAAAAAAAACGGCAAACCATACACAAAAAAATCTTACCATCTATTCACACAAAA--------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S-S---S-----------
-------------------------------------------S---------------------S--------------
---------------------------------S----------------------S-------S----------SS---
-----------S------------------------------------SSSSSSSSSSSSSS---------------S-S
---------------SS----S------S-SSSSSS--------------------------------------------
-----------------------------------------------------------------S---S----------
---------------------------------------------------------------------SSS-S-SSSS-
SSS-----------------------------------------------------S----------------SS-SSSS
--S-SSSSSSS--------------------------------S------------------------------------
----------------------------------------------------------------S---------------
---------------------------S----------------------------------------------------
-----------------------------------S-----SS-SS----------------------------------
-------S------------------------------------------------------------------------
---------------------------------------------------S-------------S--------------
-----S--S-----------------------------------------------------------------------
-------------------------------S----------------------------------S-------------
--------------------------------------------S----------------S---------------S--
------S---------S---------------------S--S--------------------------------------
---------S---------------------------------------------------------------S------
-----------------S--------------------------------------------------------------
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---S---------S--------------S------------------------------------S--------------
--------------------------------------------------------------------------------
----------------------------------------------S-------------------S-------------
--------------------------SSSS-------S------S----S------------SSSSS-------------
---------------------------S------------------------------------S---------------
-----------S-S------------------S---S----S-S-----SSSSSS---------------S---------
--S----------------------S------------------------------------S-----------------
S------------------S---S---S----S----------------------S------------S---------S-
---S------------------SS--S----------------------SS--------------------S-S------
SS-SSSS-SSSS--------------------------------------------------------------------
----------------------------------------------------------------------------S---
----------SSSSS-----S----------S------SSS-----S---------S-----------------------
--------S----------------S--------S---------S--S-S---------------
>forward_107
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-------TGAACCTGCCAATTCACCCA-----------------------------------------------------
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>reverse_2295
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------------------------------------------------------TGTGCAACCAACTCAGACGG------
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