>input_sequence_79751
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---------ATGTGCTTGGAGTTCGGCTCGTGTTTCGGCGGCAGGACGGACGACTACGGCGGCGAGCGGGCCAACCGCAG
GGAGGAGCACGGCGGCGGCCGTGGTGCTCGTGGCCGCGACCGCAGAGGGAACCACGGCACCGGCGCTGGTGGCCACAAAC
CGGCGTACCACCACCAGCCGCCCGCCGCAGTGGACGAGGCCGTGCACAAGGCCTACCACGACGGCGTGCGGAAAGCCGAC
TACGCTGGCGCTGGTGTCCGCGG-------CGGTTACGCCACCTATGCCGAACACAAGGCCGACATGGAGATGCCAAAGC
TTCCCGTGTGGAACAAGAAGGTCGGCGACGACGCCTACACGGCGTGCCTCCAAGAAGCTGTTGATACTGATGATAGGAAC
AACGCCGCCATGGATTACCACCACTATGCAACCAGCACCACCTTTACTGCTACTACTCTCGGAAGGTACTAG--------
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>chr3D_1_TraesCS3D01G051300
TGCCATGACCCTGACATCGCTCTCGCTGACCCGGCCATTGTTGCCACAGAAGCCCCGACACCACAATTGCCTTCCTCCAC
AAGTCTATCTTGCCGATGCCCCGCTTCAAAAACGATCCTCCGATTCCGATGTTTGCCACGACAAGACTTAACAGACGACT
AATTATAGAATCAAGTTCTACCTGTCTAGAAGAAATTGTGTTCCAGGAGTCTGTGAGGATCCATAACATGGAGCGAGCAT
CGCAAACGGTCAGTCTTGCCGTCTGCAAGGTAGCAGGCCTAGGGCAGAACCCCAACAAGACTGTTGACGTAGAATGTGCT
GCCTAGTCTCTTTCATGAGATCGGTCTTTTGATTGCATTGGCTAGAGCATGCACTTCTACATGGTATCGGAGCCAATAGG
TCTTAAGTTCAAGACCGGGCTGACGCAATTAAATTGCAGCCCACTTTCGGTCCATGTTTAGGCCTGAGGAAGCCACACGT
GAGGGGGAGTGTTGACGTTTAATGTGCTCCCAAGTCTCTTCTATCAGATCAGTCTTTTGGTTGCATTGGCTAGAGCATGC
ACTTCTATAAAGACCAACCACACTGCACTGCAGCCATGCATTTCCATGCCCAAACAGTACCACCCACGCCGCCCACGGCA
TCTTTGCCTGCCTCGAGAATCGATCGCCGATGCCGATGCAGCCACGGCGCCGCACCACCCGTCACGAGTCGTCGATCTCG
CAGCACCACCCTATCCCCCCAAGGCTCGCGCTGAGCTCTCTCAAGTCTCAAGCGGGGTGCACGCACGGTTGACTTGGTTT
GGGGGAGCACGACGTCGACACACCAATACCATCACCACTGTTCCCAAGCTCAAACTCACGCGCTTGGAGTAGACGAGGAC
GAACGAGCTCGTCTCTGCCCACCACCACCACACGAGATAGTATATAAACCCACCACA-----------------------
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------------------------------------------------CGTACTGTCATTTCGGAGCATCAACAACAACA
CTAGGCCAGTAAAT----------------------------------------------------------CCAACTGT
CACCAAAGAATGTGCTTGGAGTTCGGCTCGTGTTTCGGCGGCAGGACGGACGACTACGGCGGCGAGCGGGCCAACCGCAG
GGAGGAGCACGGCGGCGGCCGTGGTGCTCGTGGCCGCGACCGCAGAGGGAACCACGGCACCGGCGCTGGTGGCCACAAAC
CGGCGTACCACCACCAGCCGCCCGCCGCAGTGGACGAGGCCGTGCACAAGGCCTACCACGACGGCGTGCGGAAAGCCGAC
TACGCTGGCGCTGGTGTCCGCGG-------CGGTTACGCCACCTATGCCGAACACAAGGCCGACATGGAGATGCCAAAGC
TTCCCGTGTGGAACAAGAAGGTCGGCGACGACGCCTACACGGCGTGCCTCCAAGAAGCTGTTGATACTGATGATAGGAAC
AACGCCGCCATGGATTACCACCACTATGCAACCAGCACCACCTTTACTGCTACTACTCTCGGAAGGTACTAGCTAGAGCT
AATGGAGGTTAGCTATGCGGCTAATACTGCACTATCGGTAAGATTAGCTAGCTAGCACGGCAGTTCATCAATCCCTCCCT
CCACTTAAACACTGCCTCTGCTTCTCTACGGTAGCTCTGTTTTTCCTCTGTTTTCTCGTCTGCTGAAACTTAGGAGGCAC
CTGGAATAGTGTGTAAGAGCCGGGAACCAGGGGG-CTATAGATTTTGATCAGAGCCTTCACGTATTTGTCGATGGATGAG
CGTCACAAGTTCCAGCTCCAGGATGCGTTTACCACTGTGTTTCTGTAGTTGCTTCTACTAATATAAAGTTGAGACACTTA
TTTTGAGACTGGCGGAGTACTACTTTAGCTGTGGCCGCTTTCTTCTTGTATCATACAATGAAGTGAAAGAAAGCATTGTG
AGATCACAAATGAGTCCTCATTTCTGCTTTCTTCTTGCTTCGCTGTCATTTTTT---TTACCAGTCTGTTTGTGTAGATG
CTTGTGATTTAGTTC----------------------------------------------------AATCTCAGATGAA
TCTTCATTTCTCCTCTTGCTATGTGCATGTGGCTTCTCTGACCTCTTTAGTTCAATCACTTCTCACTTGCCAAGCATGTT
TTTGGCTTGTTGGCT-------GCTCAGCTACTGCTTGTACAGAACTCGGCACGATCTTCCACTGGATAAGCAAATTTGC
CAAGCATACCAGTAGCTAAAACCGT-------------------------------------------------------
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------------------ATAGGGAGTAGTTACTATATAACTGGCAGTTTACAAAAGAGAATGACTGTTCACCCAATATA
TTTCGTCACTGGTGTGACATAATTAGTAACAAACATCTTATGTCATGGGGATGCACGAGAAAGCCGCCCTTACGTGTATG
CAACTATGCATTGGAATTTG---------------------------GACAACAATGTGGGGTTAAAAGCAGCCAGATAC
CCTAGATAGACAAATTTTCCGCCGGCAAAGTAGAGAATAAAGTGGCAGATGTAGGTAACACAACTCACTCTACTATAGAT
AATTAAGAATTCACTCTATCATG--TTGTTGGTAGTT
>chr3B_1
TGCCATGACCCTAACATTGCTGTCGCTGACCCGGCCATTGTTGCCACAGAAGCCCCGACACCACAAGTGTCTTCTTCAAC
AATTCTATCTTCCTGATGCCCCGCTTCAACAGCGATCCTCAGATTCCGATGTTTGCCATGACAAGACTTAACAGACGGCC
AAGTATAGAATCAAGTTCTACCTGTCTAGAAGAAATCGTGTTCCAGGAGTCTGTGAGGATCCATAACATGGAGCGAGCAT
CGCAAACAGTTAGTCTTGCCGTCTGCA-----------------------------------------------------
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------------------------------------------------------ACA-----------------------
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------------------------------------------------CGTACTGTCATTTCGGAGCATCAACAACAACA
CTAGTCAAGC-AATCCAGACAGTAAAGC--------CTCCTCGGGCAGTTAGCAATCCAGATAGTCTAGTCGGCAGCTGT
CACCAAAGAATGTGCTTGGAGTTCGGCTCGTGTTTTGGCGGCAGAACGGACGACTACGGCGGCGAGCGGCTCAACCACAG
GGAGGAGCACGGCGGCGGCCGTCGTGCTCGTGGCCACGACCGCAGAGGGAACCACGGCACCGGCACCGATGGCCACAAAC
CGGCGTACCACCACCAGCCGCCCACCGCAGTGGACGAGGCCCGGCACAAGGCCTACCACGACGGCTCGTGGAAAGCCAAC
CACGCTGGCGCTGGTGCCCGCGG-------CGGTTACGCCACCTATGCGCAACACAAGGCCGACACCGAGATGCCAAAGC
TTCCCACGTGGCACAACAAGGTCGGTGACGACGCCTACGCAGCGTGCCTCCGAGAAGCTGCTGATACTGATCGTAGGAAC
AACGCCGCCATGGATTACCACCAATATCCAACCAGCACCGCCTTTTCTACTACTACTCTTGGAAGGTACTAGCTAGAGGT
AGTCAACGTTAGCTATGCGGCTATTACACCACTAGTCAAGGT------TAGCTAGCATGGCAGTTCATCAATCCTTCCCT
GTCCCTAAACACTTCCTCTGCTTCTCTCTGGTAGCTCTGTTTTTCCTCTGTTTTCTCATCCGCTGACATTGAAAAGGCAC
CTGGAAGAGCGTGTAAGAGCCGCGAACCAGGGGGCCTATATATTTTGATCAGAGCCTCCACGTATTTGTCGATGGATGAG
CGTCACAAGTTCCAGCTCCAGGATGCTTTTACCACTCTGTTTCTGTAGTTGCTTCTACTAGTATAAAGTTGAGACACTTA
TTTTGAGACGGAGGGAGTACTACTTTCGCT--------------------------------GTGAAAGAAAGCATTGTG
AGATCTCAAATGAGTCCCCATTTCTGCTTTCTTCTTGCTTTGCTGTCCTTTTTTTTCTTACCAGTCTGTTTGTGTAGTTG
CTTGTGATTTAGTTGTAGCTGCTTTCGGCTTGTATTGTTTATAATCAACTCAAAGAAAGCACTGTCAAATCTCAGATGAA
TCTTCATTTCTCCTCTTGCTATGTGCATGTGGTTTCTCTGACTTCTTTAGTTCAATCACTTCTCACTTGCCAAGCATGTT
TTTGACTAGTTGGCACTTGGCAGCTCATCTACTGTTGCTACAGAACTCAGCACGATCTTCTACTCG--------------
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------------------ATATGGAGTAGTTACTATTTAACTGACTGTTTACCAAAGATAATGACTGTTCACCCATTACA
TTTCGTCACTGGTGTGACATAATCAGTAACAAACATCTTATGTCATGGGGATGCACGAGAAAGCCGCTCATACGTCTATG
CAACCATGCATTGGATTTTTTTTTGCGGGGTCATGCATTGGAATTTTGACAACAAGTTGGGGTTAAAAGCAGCCAGACAC
CCTAGATAGACAAATTTTCTGCAGGCAAATTAGAGAATAAAGTGACAGATGTAGATAACACAACTCACTCTACTATAGAT
AATGAATAATTCACTCTATCATG--TTGTTGGTAGT-
>chr3A_135
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------------------------------------------------------GCCATGACAAGACTTAACAGACGACC
AATTATAGAATCAGGTTCTACCTGTCTAGAAGAAATCGTGTTCCAGGAGTCTGTGAGGATCCATAACATGGAGCGAGTAT
CGCAAACAGTCAGTCTTGCCGTGTGCA-----------------------------------------------------
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------------------------------------------------------AGGTAGCAGGCCTAGGGCAGAACCCC
AACAAGGCAAATCACCCTACAGCCACGCATTGCCAAACCCAAACAGTACCGCCCGCGGCATCTTTGCTTGCCTCAGTATT
CGATCGTCTCTTCCCACCACCCCCACGCGAGATAGTATATAAACCAACCGCACTGTCATTTCGGAGCATCAAAAACAACA
CTAGGCCTGTAAATCCAGCCAGTAAAGCCTCCTCGCCTCCTCGGGAAGATAGCAATCCAGATAGTCTAGTCGCCAGCTGT
CACCAAAGAATGTGCTTTGAGTTCGGCTCGTGTTTCGGCGGCAGGACGGACGACTACGGCAGCGAGCGGCCCAGCTGCAG
GGAGGAGCATGGCGGCGGCCGT----------------------------------------------------------
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>chr3A_1104
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--------------------------------GCCGCGACCGCAGAGGGAACCACGGGACCGGCGCCGATAGCCACAAAC
CGGCGTACCACCACCAGCCGCTCGCCGTAGTGGACGAGGCCGGGCACAAGGCCTACCACGACGGCATGCGGAAAGCCGAC
CACGCTGGCGCTGGTGCCCGCGGGCCGCGGCGGTTACGCCGCCTATGCGCAACACAAGGCCGACATCGGGATGCCAAAGC
TTCCCGCGTGGCACAACAAGGTCGGCGACGACGCCTACACAGCGCGCCTCCAAGAAGCTGCTGATACTGATCATAGGAAC
AACGCCGCCATGGATTACCACCACTATCCAAGCAGC------------ACCACTACTCTCGGAAGGTAGTAGCTAGAGCT
AGTCAAGGTTAGCTATGCGGCTAATACACCACTGTCGGTAAGATTA-------------GCAGTTCATCAATCCCTCCCT
GTCCCTAAACACTTCCTGTGCTTCTCTCCGGTAGCTCTGTTTGTCCTCTGTTTTCTCATCTGCTGACACTGAAAAGGTAC
CTGGAATAGTGTGTAAGAGCCCGGAACCAGGGGG-CTATAGATTTTGATCAGAGCCTCCACGTATTTGTCGATGGATGAG
CGTCACAAGTTCCAGCTCCAGGATGCTTTTACCATTCTGTTTATGTAGTAGCTTCTAC----------------------
---------------AGTACTACTTTAGCTGTGGCCGTTTTCTTCTTGTATCATACAATCAAGTGAAAG-----------
--------AATGAGTCCCCATTTCTGCTTTCTTCTTGCTTCGCTGTCATTTTTT---TCAACAGTCTTTTTGTGTAGTTG
CTTGTGATTTAGTTTTAGCTGCTTTCGCCTTGTATCGTATATAATCAAGTCACAGAAAGCACTGTCAAATCTCAGATGAA
TCTTTATTTCTCCTCTTGCTATGTGCATGTGGCTTCTCTGACTTCTTTACTTCAATCACTTCTCACTTGTCAAGCAT---
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-------ACCAGTTGCTAAAACCGTATATGGAATTGGGGAATAACTATTCATCACCCCGGGTGAGGAATGATTATTCTTC
ATCCTCCCTCTATTTTAATATCAATGCACCATAATTTTACATTTCGTAAATTTTGTCTTATTTCATACGTAAAAATAAAC
CGTAAGAAATGATATAGTCGCCGTAAAAATATATTTTATGTTACATAAAATTTCAAAGTAAAAACATAGTGTAAAATATA
CATAAAATGCAATTTTTCTGGTCTTATGATATACAGTATAATTTTGTTTTCTTATGTCAAATTTTACGTAGTGAATCAAT
ATGAATGCAACTATTGGTATTTCAAATGTAATTTATTTATGAAACGATAGTAAAATTAAATAACTTATTCTGCACCCCGG
GTGATGAATAGCATTACTATATGGAGTAGTTACTATTTAACTGACAGTTTACCAAAGAGAATGACTGTTCACCCAATATA
TTTCGTCACTGGTGTGACATAGTCAGTAACAAACATCTTATGTCATGGGGATGCACGAGAAAGCCGCCCATACGTGTATG
CAACTATGCATTGGAATTTG---------------------------GACAACAAAGTGGGGTTAAAGGCAGCCAGATAC
CCTAGATAGACATATTTTCTGTCGGCAAATTAGAGAATAAAGTGACAGGTGTAGATAACACAACTCACTCTACTATAGAT
AATGAATAAATCACTCTATCATGTGTTGTTGGTAGT-
>SNPs
------------S----S---S--------------------------------------------S--S----S--S--
--S--------S-S---------------S-S--------S-----------------S--------------------S
------------------------------------S-------------------------------------------
-------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
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---------------------------------------------------------------------------S----
---------------------------------------------------------------------S----------
----------------------S-------------------------------------------S-S-----------
------------------------------------------S----------------------S--------------
S---------------S-------------------------------SS----------------S-------------
------S----S----S-----------------------S-------------------S----------S--------
---------------------------S-----------S-----S--S-------------------------------
-S-SS----------------------SS-----------------SS---------S----------------------
SSS-S--------S-------------S-----------------------------S--------S---S-SS------
---------------------------------------------------------S----------------------
--------------------------S---------S-----------------------S-------------------
---------S-SS------------------------S---------------------S--------------------
-----S-----------S-----------------------------------------------------------S--
--------------S-----------------------------------------------------------------
------------------------------------------S-------------------------------------
----S--S------S------------S------S-SS----------S-----------S---S-SSSSSSSSSSSSSS
SSSSSSS------S------------------------------------------------------------------
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---------------------S--------------S------S--------S---------------------------
-----------------------S---------------------------------------------S----------
-------------------------------------------------------S------------------------
-------------------S---------S--------------S---------S-------------------------
---S--S-----------------------------S
>forward_374
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----------------------------------GCATTGGCTAGAGCATGCAC--------------------------
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>reverse_1682
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-ATGGAGGTTAGCTATGCGGC-----------------------------------------------------------
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