>input_sequence_79732
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---------------------------------------------------ATGCAGCAGTG---CTACACAGA--CACA
CAGACACACGTACGCATGTTACGTTCGAGCGGCATGAAGGGAGGACGGCGATCCAACAGGAGGCTCCTCAGGTCCTTCCT
GGCCGCGTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGCGCCGCCGCCCCGACGGCGAGCGCGTGGGTGCAACTCG
AGGCCGGCGGCGGCGGCGACGAGACCATCCCGGTGGACGTGCCGAGGGGCCACACGGTGGTGTACGTCGGGGAGGAGCTG
CGGCGGTATGTCGTCCGGGTGTCCTCCCTCGACCACCCGCTGTTCCGGGAGCTGCTCGACCGCGCGCGGGAGGAGTACGA
GTTCGCCGCCGACGCCAGGCTGTGCCTGCCCTGCGACGAGGAAATCTTCCTCGCCGTGCTCTGCCACGTCGACTCCAAGC
ACGACTACTGGAGGCTAGCGCTCTGCAGCTGA------------------------------------------------
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>chr2B_1_TraesCS2B01G398600
GAGTGAGGAGCAGTCCAAGCAGAGCTTCCTTTCACCGCAATGAATGCCGCCGCCGCCGCCGCCGTTGCCCCGTCCAATGA
GGCCGCGAGCCCCCATCCCTCTCCTCGCCCCCTAGCTTTATCTCCTCCCCGACCTCAAGGCGATGTGTGCAAGATTCTAA
CTCCTTCGACAACTTCGAGACGCAGTTGGTTGCTCGGCCGGTTGATCCTCCTCCCATTATTGGAGAGAGAACGCGCGTGC
CGCTCCAGAATCTTCGCTCGTACGTACTCGGGTGACGTCGATCGACCATTTTGGTTGAAGGAGATGGGAGGAGGAGAAAA
GGACTACGTAGTA---CGTACACGGTGATGTACCAGCTCCATACGTTCAAGGACGTACGCGCTACCATTACCTTTTGTAC
TGAAAGCTGTTTTATATTCTGTCAAGGGCTGTGGCGTTTGCGTGGTCAACATGCGCCTGCTGATAAATTCGTGTCAAGCT
GTACGCAGTGGTTGCTCGAGACTGCAAGCCACTCATTTGACCGGAATATCGTGGCGGAATTCATGAGCACTACTGCCTCG
GTTGATCCGTAGAAAGT--------TAGGCCAGTGGTGATGGTGTACGAGTACGACTGTACGCTAATGGCAGCACATGCG
CGACTTAATGCAAACGCAGGTAATTTTCAACGATCGCGACGACGGTAAGTTGCCATCACTGTGGATGCAACTAAAAGTTG
CCCGCATAACGATAAGTGACATAAGGAATCCCCATGGTTGTTTACAACTACTTGCAAAGTTGTCGACCGACTAGACCTTG
CAAACGTATATATATATACCAATGTACGATCGGGTTTCTTTCGTTCTCTTTTGCGTACGCATATCCAAACGTCACCTCAA
GAGTCTATTTTTCCAGCTTGCCATAAGCTAAACAAACGTACCACATGCCTCTGAGGCTACAACCATTATTAATGTCGACC
AATCCACAAGGCACAGGCCCAGTTGCATGGCCGCGTATATATGCGGAATATATGCAGCAGTG---CTACACAGA--CACA
CAGACACACGTACGCATGTTACGTTCGAGCGGCATGAAGGGAGGACGGCGATCCAACAGGAGGCTCCTCAGGTCCTTCCT
GGCCGCGTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGCGCCGCCGCCCCGACGGCGAGCGCGTGGGTGCAACTCG
AGGCCGGCGGCGGCGGCGACGAGACCATCCCGGTGGACGTGCCGAGGGGCCACACGGTGGTGTACGTCGGGGAGGAGCTG
CGGCGGTATGTCGTCCGGGTGTCCTCCCTCGACCACCCGCTGTTCCGGGAGCTGCTCGACCGCGCGCGGGAGGAGTACGA
GTTCGCCGCCGACGCCAGGCTGTGCCTGCCCTGCGACGAGGAAATCTTCCTCGCCGTGCTCTGCCACGTCGACTCCAAGC
ACGACTACTGGAGGCTAGCGCTCTGCAGCTGATCACGAAGTTGGTGGATCGC----------CG---CGTTGGCCCCTCT
CCTGTGTAGGATGCAAAGTACAGTAGC-----TAACTGCTGCGGGATAACGAGATTTGCGTTCATGGTCTCAGATGTATA
GGTGTAGGCTCCATGTGTGCAGAAATTTAGTTCCGTTGTTCAATGCTCTGTATTCCATTCTCCAAGTATGCGTCGCATGC
AAAATGTCGTGGTACAGAATGACATCCATTC----TACGTAA----CTTGCAGTTTGTTTGGCCTAATAATTCGTTCGGT
CAATGG-TATCCAGGCTTTGCAATTGCGCACAGTGCAAAATCATGCTGGTGCAATCTAACATTTGTGAAGATGTAAACGA
TGATACATTCAGAGTTCAAACAAAGCTGCTCGACTTGTAGAACGCCACCATGGTGGAATTACAGTTTGCATGCTGCACAA
CTGACAGTAGAAATGCACAAACACTGTCGCAAACGGTGGTGGGCGGATTTGCTGGGATTTTGTTTTGCGAGTAAAAGAGG
ACACCCGCGCCCCCCCTCCCTCCGATTTTTATTAAAGAAACAACCTGGCTCGTCACATAGCAATTCATCTCAAACGCAAT
ATTATTTACCCCAAAAGGCTTTCACCCAGCATTATATATAAAGCAATGATCAACAACAACAACCCGATACAAACACACGC
TACCATAAAACACACATCCAAGATAGGATACATAGGCACTGATCGCATCAACACCACCTCTAGTACTACGAGAGCAACCG
GGGGCTCAACCGAGAACTTGCCACCGCAAAAAAAATGAAGCCGCATATGACGAATCGTGGGCTACAAGTCGGCGCCTTCA
AGAAGGAAACGACACCGGAGCATCGCCACCGCCCGACCCGAGGATCAGAATTTCCCCTGGAGTAGCACGACGAGCAGCTA
GAGCCGCGACGACGCCTTCAAAAAGGGAACTAGCTTCGCCGCCACCGGTCCGTCCGAAGATAGAACATGTTTTCACCCTG
ACCAACACTCACCGCCACC
>chr2A_1
GAGTGAGGAGCAGTCCCGGCAGAGCTTCCTTTCACCGCAATGAAT------GCCGCCGCCGCCGTCGCCCCGTCCAATGA
GGCCGCGAGCC-CCATTCCTCTCCTCGCGCCCTAGC-TTATCTCCTCCCCGACCTCAAGGCGATGTGTGCAAGAATCTAA
CTCCTTCGACAACTTCGAGACGCAGTTAGTTGCTCGGCCGCTCGATCCTCCTCCCATTATTGGAGAGAGA----GCGTGC
CGCTCCAGAATCTT----------------CGTGACGTCGATCGACCATTTTGGTTGAAGGAGATGGGAGGAGGAGAAAA
GGACTACGTAGTA---CGTACACGGTGATGTACCAGCTCCATACGTTCAAGGACGTACGCCGGGACTATCTCGTACCGTC
TAAGAACTGTTTTATATTCTGTCAAGGGCTGTGGCCTTTGCGTGGTCAACATGCGCCTGCCTATAAATTCGTGTCAAGCT
GTACGCAGTGGTTGCTGGAGACTGCAAGGCACTCATTTGACCGGAATATCGTGGCGGAATTCAGGAGCACTGCTGCCTCG
GTTGATCCATCCATATAAAGGTA----GGCCACTGATGATGGTGTACGG------CTGTACGCTAATGGCAGCACATGCA
CGACTTAATGCAGACACAGGTAATTTTCAACGATCGCGACGACGGCTTTA---CATCACTGTGGATGCAACTAAAAGTTG
CCCGCATAACGATAAGTGACATAAGGAATCCCCTTGGCCGTTGCGGC-----------------------CTAGACCGTG
CAAACGTATATA------CCAATGTACGATCGGTTTTCTTTCGTTCTCTTTGGCGTACGCACATCCAAACGTCACCTCGA
GAGTCTAGTTTTGCAGCTTGCCACAAGCTAAACAAACATAGCACATGCCTCTGAGGCTACAACC---ATTAATGTCGACC
AATCCACAAGGCACAGGCCCAGTTGCATGACCGCGTATATATACAGAATATACGCAGCAGTG---CCACACAGTGCCACA
CAGACACACGTACGCATGGTACGTTCGAGCGGCATGAAGGGAGGACGGCGATCCAACAGGAGGCTCCTCAGGTCCTTCCT
GGGCGCCTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGC---------CCGACGGCGAGCGCGTGGGCGCAACTCG
AGGCCGGAG---------ACGAGGCCATCCCGGTGGACGTGCCGAGGGGCCACACGGTGGTGTACGTCGGGGAGGAGCTG
CGGCGGTACGTCGTCCGGGTCTCCTCCCTCGACCACCCGCTGTTCCGGGAGCTGCTCGACCGCGCGCGGGAAGAGTACGA
GTTCGCCGCCGACGCCAGGCTCTGCCTGCCCTGCGACGAGGACATCTTCCTCGCCGTGCTCTGCCACGTCGACTCCAACC
ACGACTACTGGAGGCTGGCACTCTGCAGCTGATC--------------CCCCGAACGCCGCGCG---CGTTGGCCCCTCT
CCTGTGTAGGATGCAAAGTACAGCAGC-----TAATTGGTGCGGGATGACGAGATTTGCGTTCATGGTCTCGGGTGTATA
GGTGTAGGCTCCATGTGTGCACAAATTTAGTTCCGTTGTTCAATGCTCTGTATTCCATTCTCCAAGGATGCGTCGCATGC
AAAACGTCGTGGTACAGAATGACATCCATTC----TAGGACGTAACCTTGCAGTTTGTTTGGCCTCCTAATTCGTTCGGT
CCATGGCTATCCATGCTTTGCAATTGCGCACAGTGCAAAAT---------------------------------------
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>chr2D_1
GAGCGAGGAGCAGTCCCAGCAGAGCTTCCTTTCACCGCAATGAATGCCGCCGCCGCCGCCGCCGTCACCCCGTCCAATGA
GGCCGCGAGCCCCCATCCCTGTCCTCGCGCCCTAGC-TTATCTCCTCCCCGACCTCAAGGCGATGTGTGCAAGAATCTAA
CTCCTTCCACAACTTCGAGACGCAGTTAGTTGCTCGGCCGCTCGATCCTCCTCCCATTATTGGAGAGAGAACGC----GC
CGCTCCAGAATCTT----------------GGTGACGTCGATCGACCATTTTGGTTGAAGGAGATGGGAGGAGGAGAAAA
GGACTACGTAGTAGTACGTACACGGTGATGTACCAGTTCCATACGTTCAAGGACGTACGCGCTGCCAATACCTTTTGTAC
TGAAAACTGTTTTATATCCTGTCAAGGGCTGTGGCCTTTGCGTGTTCAACATGCGCCTGCCGATAAGTTCGTGTCAAGCT
GTACGCAGTGGTTGCTCGAGACTGCAAGCCACTCATTTGACCAGAATATCGTGGCGGAATTC----------CTGCCTCG
GTTGATCCATCCGTAGAAAGGTACGTAGGCCAGTGGTGATGGTGTACGA------CTGTACGCTAATGGCAGCACATGCA
CGACTTAATGCAGACACAGGTAATTTTCAACCATCGCGACGACGG--------CATCACCGTGGATGCAACTA----TTG
CCCGCATAACGATAAGTGACATAAGGAATCCCCTTGGCCGTTGCGGC-----------------------CTAGACCGTG
CAAACGTATATA------CCAATGTACGATCGGTTTTCTTTCGTTCTCTTTTGCGTACGCACATCCAAACGTCACCTCAA
GAGTCTAGTTTTCCAGCTTGCCACAAGCTAAACAAACATAGCACATGCCTCTGAGGCTACAACC---ATTAATGTCGACC
AATCCACAAGGCACAGGACCAGTTGCATGGCCGCGTATATATACAGAATATATGCAGCAGTGTCACCACACAGTGCCACA
CAGACACACGTACGCATGGTACGTTCGAGCGGCATGAAGGGAGGACGGCGGTCCAACAGGAGGCTCCTCAGGTCGTTCCT
GGGCGCGTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGC---------CCGACGGCGAGCGCGTGGGTGCAACTCG
AGGCCGGCG---------ACGAGGCCATCCCGGTGGACGTGCCGAGGGGCCACACGGTGGTGTACGTCGGGGAGGAGCTG
CGGCGGTACGTCGTCCGCGTGTCCTCCCTCGACCACCCGCTGTTCCGGGAGCTGCTCGACCGCGCGCGGGAGGAGTACGA
GTTCGCCGCCGACGCCAAGCTGTGCCTGCCCTGCGACGAGGACATCTTCCTCGCCGTGCTCTGCCACGTCGACTCCAAGC
ACGACTACTGGAGGCTAGCACTCTGCAGCTGATCACAGTGATCCGATCCCCCGAACGCCGCGCGCGTCGTTGGCCCCTCT
CCTGTGTAGGATCCAAAGTACAGTAGCCGTCTTAATTGCTGCGGGATAACGAGATTTGTGTTCATGGTCTCAGATGTATA
GGTGTAGGCCCCATGTGTGCAGAAATTTAGTTCCGTTGTTCAATGCTCTGTATTCCATTCTCCAAGGATGAGTCGCATGC
AAAATGGCGTGGTACAGAATGGCATCCATTCTTTCTACGTAA----CTTGCAATTTGTTTGGCCTCATAATTCGTTCGGT
CCATGACTATCCAGGCTTTGCAATTGCGCACAGTGCAAAAT---------------------------------------
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>SNPs
----------------S------------------------------------------------S--------------
----------------------------S-------S-------------------------------------S-----
---------------------------S------------S-S-------------------------------------
--------------SSSSSSSSSSSSSSSS--------------------------------------------------
---------------------------------------------------------------S---S------------
-----S-----------------------------S------------------------S-------------------
---------------------------------------------------------------S-------S--------
--------S-SS-S--S--------------------------------SSSSSS------------------------S
------------S--S-----------------------------SSSSSSSS---------------------------
---------------------------------S---SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--
------------SSSSSS---------------S---------------------------S------------------
-------S---------------S-------------S--S-----------------------SSS-------------
------------------------------------------S-S---------------------S------S------
------------------S-------------------------------------------------------------
--S----------------------------------------SSSSSSSSS----------------------------
---------SSSSSSSSS-----S--------------------------------------------------------
--------S-----------------------------------------------------------------------
------------------------------------------S-------------------------------------
-------------------S----------------SSS-S-SSSSSSS-S-----------------------------
-----------------------------------S--------------------------------------------
------------------------------------------------------------------S-------------
-----------------------------------------------------------------S--------------
-S---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_261
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-GCTCCAGAATCTTCGCTCGT-----------------------------------------------------------
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>reverse_2279
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--------------------------------------AGCCGCATATGACGAATCGT----------------------
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