>input_sequence_79729
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------------------------------------------ATGGCGAAATGCAGCAAGATCCGCAACATCGTCTGGCT
CCGGCAGACGCTGCGGCGGTGGCGGTCCCGCGCGGCGGCGCGCACGGCGGCCGGCGGCGGCGG---CGGCGCCGTGTCAG
TGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGCTCGTCGCGGCGGTTCGTGGTGCGCGCGGCGCACCTGAACCACCCC
GTCTTCCGGGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGGTTCCCCTCCGGCGCCTCCGGCGCGTGCGGCCCCATCGC
GCTCCCCTGCGACGAGGGCCTCTTCGAGCACGTGCTCCGCCACCTCTCCTCCTCCTCGTCCGCCGCGCGGTTCCTCACCC
TCGAGGACATCAAGAGCGGCGCCTACTCGTGCTGCTGCGCGGCCGCCGGCGACGCGCTCCCGCTCCTCCGCGGCATCTCC
TCCGACAAGTTCGTCTGGTGA-----------------------------------------------------------
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>chr2A_1_TraesCS2A01G495100
TCTGATCTACAGAAGACTTCTACGGTTATTACTTCTTTTCCAGGGCGTTGGTCCAGCTGGACCTTAGCACGATGACTTCT
AGACCGCAAGATACAATATCAGGGCAGCGATATTAGGTTGCCTTCCACTAGCTCGTCCGGTAGATTAAATTTGTTTGGTT
CACTAGTAACCAGGTTGTCCTTTTTATGGGAATGTCATATATCGTTGAAAGTCTTTAATACAAAATCAAGAGTCTTATTC
GAAAAAAATCATCAACTCTCCATTGATGAGGCATTGCAAAGACTACTTGGCGTGCACATACACAAGGAAACATCGAACTT
GATAAAGAGACTACCTCATCCATAATTTAAGTCTTTTTAACCATGGCATACTATTTTCGGTGCATTCATATAGAAATGCA
AAATAGTTTTGAATATTTGTCACGGTTATAAAAGCATCAACATGCGTATAATTTTGCAATTCGATCACTAAATACAGCA-
TATTTTTTTTGGCAGTATTGTTTCCATAGATATGTCATGTATTTATGAAGAAAGCGTACAACTTTTAGGTCTCAAAGTCT
GCTGAACCTATCTTAAGAAAATGTCGTGACAAACAATGATCACTAACGACCTTCATTTGTGAGTATTCCTCTATAAACTA
ATATAAAAGCATTTAGATCACTATTTTAGTATTCTAAATGCTCTAATATTAGTTTACAGGGGGAGTATAAAATATTTCAA
CTGCAAATGCATGTACATATTTAAAAGCCGGAGCTTATGCTTTTTTTTGTGT----GGAAAATGTAGGAATGAAGTCCCG
TCCCCTTCACACAGCACAGATTATTTATTCGAGGCCAACTGGACT---ACGAACCCAAGTCCATCATCTCCCTCCCA---
---------------CTCCCAC----------------------CCTCCCTCCTATAAAGCTTCCTACCCCGCCACCTAC
GGGA--------AGCCAGCTCCATTCCACCAGCTCCTCCTCCTCTC---------CCCACCCAACAACAGCAGACCAGC-
-----------AGCTCAGCTCAGCCCCTCAACTGCCG-----ATGGCGAAATGCAGCAAGATCCGCAACATCGTCTGGCT
CCGGCAGACGCTGCGGCGGTGGCGGTCCCGCGCGGCGGCGCGCACGGCGGCCGGCGGCGGCGG---CGGCGCCGTGTCAG
TGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGCTCGTCGCGGCGGTTCGTGGTGCGCGCGGCGCACCTGAACCACCCC
GTCTTCCGGGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGGTTCCCCTCCGGCGCCTCCGGCGCGTGCGGCCCCATCGC
GCTCCCCTGCGACGAGGGCCTCTTCGAGCACGTGCTCCGCCACCTCTCCTCCTCCTCGTCCGCCGCGCGGTTCCTCACCC
TCGAGGACATCAAGAGCGGCGCCTACTCGTGCTGCTGCGCGGCCGCCGGCGACGCGCTCCCGCTCCTCCGCGGCATCTCC
TCCGACAAGTTCGTCTGGTGACTCCGCTCCGAGCTAGGCCG------------GCCGCGCGCGCGCTCCACGCCATTTGC
GCTGGTGGTGGCCGTCGTGTTTTTTTTGCTTCTTTTTCTTTTTTCTTCCCTCTCCCTCCCTCCATTGTCGCCGGGCGGAG
CAGAGCCGCCGGGACGGAGCGAGAGGTCGTGAGCGGCCGGCAGGAGGCGGCGAAGTGAGATGGCTGAGGAACCTCCGGGC
CTTGAGGCGCCCGG---GGTCTAGCCATCCATTCACTCCCTTGTCAAATCCGGGCAGGAAAATTACTTAGTAGTGCCGGG
GATCTATTCTTTCTTCTTCTTCTTCTTCTTGATTATTTTTCCTTCACTTACCGAATAATTCACCGTTGTAAATAGC---T
CGCCCGTGCTACGGCGATTCGGCCGACATTGCAAGTGAATTCAAGTGAAACATTTCTACT--------------------
---------------------CACCGTTGTGTGATGTTGAGATTTCAAATTTCTCTTGGTTTCTGCAGAGAGTCGTACGC
ACCGTTCTCCGAGAAAACTGTATTCTACTCAGAAGTGCAGATGGGTGCTAGTCTAGTACCTTTCTGAGCTGCATGTGGTA
GGGCAAGCGTGAAGAAGATTTGAACTTGCATGGTTTAACTAATGGGAGAACCCAACAACGGTTTGGGAGCTTAAGTACAA
ACTTTTGGAGTAG---AATATGAGTGTTCACGCTGTCGCTAGGCTGGTGGCAATGATCACGGAATTATCACCATCTACTA
CCCGCTACCAGCTCGAATTATTATCTATTATTGGCAATAATTCGTTCCACAACTGCAACAATCAACATAAGTAGTAGTAG
TAGCATTTCCCGAATCGCAACCGCTATTGTGCAGTCAACCAAGTATTTTTCAGTTTCTTTCTCTCCTGCCCG--------
-----------------CCTCAGGATGATCCCCC-----GCATGTAAGATCGGATGTCAGGGCCTCTTCTCGA-----GA
GATCACCGTCACGCTCTCTCAAAAGTGTTCGGTCACCGTGCACCCGCGGTGGTTTGTATGGAATCCTGAGAGGACGAG
>chr2D_1
TCCGATCTACAGAAGGCTTCTACGGTGATTATTTCTTTTCCATGGCGTTGATCCAGCTGGACCTTAACACGATGACTTCT
CGACCGCGAGATACAATGTCAAGGAGGCGATATTAGCTTGCCTTTCGCTAGGTCGTCCTGTAGATTAAATGTGTCTGGTT
CACTGGTAACCAGGTTGTCCTTTTT-TTGGAATGTCATATATCGTTGGAAGTCTTTAATACAAAATTGAGAGTCTTATTC
GCAAAAATTCATCAACTCTCTATTGATGAGGGATTGCAAAGATTACTTGGCGTGGACATACACAAGGAAACATTGAACTT
GATAAAGAGAATACCTCATCCATAATTTAAGTCTTTTTTACCATGGGATACTATTTTCGGTACATGCATATAGAAATGCA
AAATAGGTTTGAATATTTGTCATGGTTATAAAAGCATCAACATGCTTATATTTTTGTATTTGGAGCACTAAATACAGCAG
TATATTTGTGGGCAATATTGTTTCCATAGATATGTTATGTATTTATGAAGAAAGCGTACAACTTTTAGGTTTCAAAGTCT
GCTGAACCTATCTTAAGAAAATGTCGTGACAAACAATGGTCACTAACGACCTTCATTTGTGAGTAT--------------
--------------------------------------------------------------------AAAATATTTCAA
CTGAAAATG--TGTATATATTTAAAAACCGGAGCTTATGCTCTCTTTTTTTCTCCCGGAAAATGTAGGAATGAAGTCCCG
TCCCCTTCACACAGCACAGATTATTTATTCGAGGCCAACTGGACT---ACGAACCCAAGTCC-AGCAT------------
-----------CTCCCTCCCTC----------------------CCTCCCTCCTATAAAGCCTCCTACCCCGCCACCTAC
GGGA--------AGCCAGCTCCATTCCACCAGCTCCTCCTCCTCTC---------CCCACCCAACAACAGCAGACCAGCA
GGCAGCACAGCAGCTCAGCCCAGTCCCTCAACTGCCG-----ATGGCGAAATGCAGCAAGATCCGCAACATCGTCTGGCT
CCGGCAGACGCTGCGGCGGTGGCGGTCCCGCGCCGCGGCGCGCACGGCGGCCGGCGGCGGCGGGGGCGGCGCGGTGTCGG
TGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGCTCATCGCGGCGGTTCGTGGTGCGCGCGGCGCACCTGAACCACCCC
GTCTTCCGGGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGGTTCCCGTCGGGCGCCTCCGGCGCGTGCGGCCCCATCGC
GCTCCCCTGCGACGAGGGCCTCTTCGAGCACGTGCTCCGCCACCTCTCCTCCTCCTCGTCCGCCGCGCGGTTCTTCACCC
TGGAGGACATCAAGAGCGGCGCCTACTCGTGCTGCTGCGCGGCCGCCGGCGACGCGCTCCCGCTCCTCCGCGGCATCTCC
TCCGACAAGTTCGTCTGGTGACTCCACTCCGAGCTAGGCCGGCCGGCCGGCCAGCCGCGCGCGCGCTCCACGCCATTGT-
GGTGGTAGTGGCCGTCGTGTTTTTTTTTTGGTTGTTTATTTTTGTTTCCCTCTCCCTCCCTCCATTGTCGCCGGGCGGAG
CAGAGCCGCCGGGACGGAGCGAGAGGTCGTGAGCGGCCGGCAGGAGGCGGCGAAGTGAGATGGCTGAGGAACCTCCGGGC
CTTGAGACGCCCGGGTCGGTCTAGCCATCCATTCACTCCCTTGTCAAATCCGGGCAGGAAAATTACTTAGTAGTGCCAGG
GATTTATTCT------TTCTTCTTCTTCTTGATTATTTTTCCTTCACTTACCGAATAATTCACCGTTGTAAATAGCTAGT
AGCCCGTGCTACGGCGATTCGGCCG-CATTGCAAGTGAATTGAAGTGAAACATTTCTACTACCTACTCTAGTTCTTTGTA
CTGCT---AGTCAGTACTACTCACCGTTGTGTGATGTTGAGATTTCAAATTTCTCTTGGTTTCCGCAGAGAGTCGTACGC
ACCGTTCTCTGAGAAAACTGTATTCTACTCAGAAGTGCAGATGGGTACTGGTTTG---CCTTTCTGAACTGCATGTGGTA
GGGCAAGCTTGAAGAAGATTTGAACTTGCATGGTTTAATTAATGGGGGTT---------------GG-----------AA
GCTTTACGGGTAGTAGAATATGTGTGTTCACGCTGTCGCTAGGCTGGTGGCAATGATCATGGAACA---ACCATCCACCA
CCCGCTACCAGCTCGAATTATCATCTATTATTGGCAATAATTCGTCCTGCAACTGCAACAATCAACATA---AGTAGCAG
TAGCATTTCCCGAATCGCAACCGCTATTGTGCAGTCAACTAAGTATTTTTCAGAATTTTTCTCTCCTGCCCGAGATTACG
GTATGGCCAGTGCAAGGCCTCAGGGTGATGCCTCGCATGGCATGTAGGATCGGATGTCAGGGCCTCTCTCTTTCTGGGGA
GATCACCGTCACGCTCTCTCAAAAGTGTTCAGTCACCATGCACG-GCGGCGGTTTGTATGGAATCCTGACGAG-----
>chr2B_5
----ATCTATAGAAGGCTTCTACGGTTATCACTTCTTTTCCAGGGCATTTGTCCAGTCGGACCTTAGCACGATGACTTC-
-GACCACAAGATACAATGTCACGGTGGCAATATTAGCTTGCCTTCCGCTAGCTCGTCCCGTAGATTATTATT-TTTGGTT
CACTGGTAACCAGGATGTCCTTTTT-TGAGAATGTCATATATCCTTGGAAGTCTTTAATACAAAATCGAGAGTCTTATTT
GCAAAAATTCATCAACTCTCTATTGATGAGGGATCGCAAAGAGTACTTGGCGTGCACATACACAAGGAAACATTGAACTT
GATAAAGAAAATACCTCATCCATAATTTAAGTCTTTTTTACCATGGGATACTATTGTCGGTACATGCATATAGAAATGCA
AAATAGGTTTGAATATTTGTCACGGTTATAAAAGCATCAACATGCTTATATTTTTGCATTTGGAGCACTAAATACAGAAA
TATATTTGTGGGCAATATTGCTAT-----ATATGTTATGTATTTATGAAGAAAGCGTACAACTTTTAGGCTTCAAAGTCT
GCTGAACCTATCT-AAGAAAATGTCGTGAG-AACAATGATCACTAACGACCTTCATGTGTGAGTA---------------
-------------------------------------------------------------------TAAAATATTTGAA
CGGAAAATGTATATACATATTTAAAAGCCGGAGCTTATGTTTTTTTTTT--------GAAAATGTAGGAATGGAGTCCCG
TCCCCTTCACACAGCACAGATTATTTATTCGAGGCCAACTGGACT---ACGAACCCAAGTCCATCATCTCCCTCCCTCCC
TCACTCACTCCCTCCCTCCCTC----------------------CCTCCCTCCTATAAAGCCTCCTACCCCGCCACCTAC
GGGA--------AGCCAGCTCCATTCCACCAGCTCCTCCTC---TC---------CCCACCCAACAACAGCAGACCAGCA
GGCAGCACAGCAGCA-----CAGTCCCTCAACTGCCG-----ATGGCGAAATGCAGCAAGATCCGCAACATCGTCTGGCT
CAGGCAGACGCTTCGGCGGTGGCGGTCCCGCGCCGCGGCGCGCACGGCGGCTGGCGGAGGCGC---CGGCGCCGTGTCGG
TGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGCTCGTCCCGGCGGTTCGTGGTGCGCGCGGCGCACCTGAACCACCCC
GTCTTCCGGGAGCTGCTCAGGCAGGCGGAGGAGGAGTACGGGTTCCCCTCCGGCGCCTCCGGCGCGTGCGGCCCCATCGC
GCTCCCCTGCGACGAGGGCCTCTTCGAGCACGTCCTCCGCCACCTCTCCTCCTCCTCGTCCGCCGCGCGGTTCTTCACCC
TCGATGACATCAAGAGCGGCGCCTACTCGTGCTGCTGCGCGGCCGCCGGCGACGCGCTCCCGCTCCTCCGCGGCATCTCG
TCCGACAAGTTCGTCTGGTGACTCCAATCCGAGCTAGGCCAGCCGGCTAGC------CGCGCGCGCTCCACGTCATTGT-
GCTGGTGGTGGCCGTCGTGTTTTTTGTTTCT-------TTTTCGTTTTCCTCTCCCTCCCTCCATTGTCGCCGGGCGGAG
CAGAGCCGCCGGGACGGAGCGAGAGGTCGTGAGCGGCCGGCAGGAGGCGGCGAAGTGAGATGGCTGAGAAACCTCCGGGT
CTTGAGACGCCCGG---GGTCTAGCCATCCATTCACTCCCTTGTCAAATCCGGGCAGGAAAATTACTTAGTAGTGCCGGG
ATT-TATTCTTTCTTCTTCTTCTTCTTCTTGATTATTTTTC-TTCACTTACTGAATAATTCACCC-TGTAAATAGC---T
AGCCCGTGCTCCGGCGATTCGGCCGACATTGCAAGTGAATTGAAGTGAAACATTTCTACTACTAC--CTAGTTCTGTGAA
CTACTCCTAGTCAGTAGTACTAACCGTTGTGTGATGTTGAGATTTCAAAATTTTCTTGGTTTCTGCAGAGAGTCGTACGC
ACCGCTCTCTGAGAAAACTGTATTCTACTCAGAAGTGCAGATGGGTACTGGTC---TACCTTTCTGAGCTGCATGTGGTA
GGGCAAGCTTGAAGAAGATTTGAACTTGCGTGATTTAATCAGTGGGGGTT---------------GGAGCTTAAGTACAA
GCTTTACGGGTAGTAGAATATGTGTGCTCACGCTGTCGCTAGGCTGGTCGCAATGATCATCGAACA---ATCATCTGCCA
CCCGCTACCAGCTCGAATAATTTTCCATTATCGGCAATAATTCGTCCTGCAACTGCAACAATCAACATA---AGT---AG
TAGCATTTCCCGAGTCGCAACCGCTA------------------------------------------------------
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>chr2D_775
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-----------------------------------------------------------AAATGGAAGAACAAAGCCCCG
TCCCCTTCACACAGCTCAGATTATTTGATCCAGGCCAACTGGACGATGACGAACCCAAGTCCCAACAT------------
-----------TTCCGTGCCTCATCATCACACACAAAAACATTTCCAACATCCTATAAAACCTCCCACCACGCCCTCCAC
GAGAAGCCAGCCAGCCAGCTCCATTCCACCAACTCGTCCTCCCCCAGGTCATTAACCCACCATCGACCAGCAGCGCAGCA
GGCCACCAGAAGCTC-------GCCCCTCAACCTCCCATCCCATGGCGAAATGCAGCAAGATCCGCGACATCGTCTGGCT
CCGGCAGACCCTGCGGAGGTGGCGGTCCCGCGCCGCGGCGCGCGTGGCCGCCGAGGGCGGCGTGA------------CGG
TGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCGGGGCCTCGCGGCGGTTCGTGGTGCGGGCGGCGCACCTGAACCACCCC
GTCTTCCTCGAGCTGCTCCGGCAGGCGGAGGAGGAGTACGGGTTCCGGA---------CCGGCGCGTGCGGCCCCATCGC
GCTCCCCTGCGACGAGGACCGCTTCCGGGACGTCCTCCGCCGCGTCTCCTCC----------------------------
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>SNPs
--S------------S----------------------------------------------------------------
S----------------S---S--SS----------S---------S-----------S---------------------
----S--------------------S---------------------S-------------------S------------
-S-----S------------S----------S----------S------------------------------S------
----------S---------------------------S-------S--------------S---S--------------
------S--------------------------------------S----S-------S--S--S---------------
---S---S-S----S--------------------S----------------------------------S---------
------------------------------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
---S-----S--------------------------------------S-SS----------------------------
----------------------------------------------------------------------------S---
--------------------S----------------------------------------S------------------
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-------------------S------------------------------------------------------------
---------------------------------S--------------------------------------------S-
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-------------------------------------------------------------------------S------
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-------------------------S---------------------------------------------------SSS
---------------------------SSS-S-S---S-----SS-----------------------------------
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------S-------------------------------------------------------------------------
---S----------------------------------------------------------------------------
S----------------------------------------S--------------------------------------
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---------S------------------------------------S--S----SS------------------------
--------S-----------------------------S-------S-SSSSSSSSSSSSSSSSS---------------
S----SS-S-------------S------------------------------------S----SSSSS---------S-
---------------------------------------------S-SS--------------------SSS-----S--
---------------------------------------S-------------SS-S-----------------------
------------------------S----S--S-------------S--------------------SSSSSS-------
------------------------------S------S-----SS----S-------------------SSS-SSSSS
>forward_877
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---------------------------------------------------------AGTCCATCATCTCCCTCCCA---
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>reverse_2549
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--------------------------------------------------------------------CTCGAGAGATCA
CCGTCACG----------------------------------------------------------------------
