>input_sequence_79701
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---------------------------------------------------------------------------ATGGA
GGACTTCTACTACTTCCCCAGCTCCTTGGAGACCTCTGAAATTGTCCACAGAGGGTTCCTCCCCGTCGTGCACTCCTCCC
CCCGCAACCGGAGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTCCCGCGACGACGCCGGCGAGCTCGGCCACCACTACCTC
GACGCCTGCTTCCGGTGCGGGCGGACAATCGCTGGAAACAAGGACATCTTCATGTACAGGTAAACATC-TTACGCCGTCA
TGCTCT-GGGTTTGACTGTGATGGTGGCATGTGCAAACGTGATTCTTTGCTGGCGCAGAGGCGACACCCCGTTCTGCAGC
GAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGACCCAAGAAGTCCGCGGCCGCGACGACGAC
GGAGCAGCAGTCGCAGCGGCAGAGCTCGCACAGAGTGCCCATCTGGGCTCGGTAG-------------------------
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>chr6D_1_TraesCS6D01G242700
ATGGGAATATTAGCAAATTCAACATATTTCACTCAATTCCTCGGTAACAAGGATTCCACATTGTACCGCATCGTGCTAAA
GGCTTGGGTCCCGCTGAAAGTAATTTTGCTTGGCTCCTCATCTATAAGAGGGGTATAAAGGTTGATAGCCCAGGTGTCCA
AACTGTGGTTTATGCCCATATGCAAGCAAGTTCATGAGTACGAGGCTCACCTACCCTTTAGTTGCCATAACTCGATGCAC
ATCTG---------------------------------------------------------------------------
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------------------------GGGAATATGGATGAACGGGTTGGGGTCTTGAACTCCTACCATGTGAGGAACCCACA
CTGCCGTGAGAAAATTGGCAGTTAGCCATCATC-----------------------------------------------
-------------------------ACAAATGTGAGCCATTAGTGATCTATTTGGTTGCCATGCTAGTTTCTTGGTAGAT
TTTGGAATGAAGCACGATGCTCGGCCTTTCGCACCATCTCCACCTTGCCCGGGTGCCGTTGGAGAAAATTAATATCGAGA
TGGTTCTTTGAACGTTAAA-AGAA-ATCAAACAACAATGCCCCCATACTCCAAATGATGGTTTAGCTACTTGTACTATTC
ACATA---------------------------------------------------------------------------
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----------------------------TGTTTAAGAAAGGCACACATAGAATGTTGGT--GCA-----TTTTTTTTCTT
ATGCAAAGTTCACTTATACAATAT---ATATTGTATAT---------GTGTTACAA------------------------
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----------ATGATTTCATGCTTTTATGTTTTTCATCAGTTTATAAACACACTAAATTATGTGCATGTGCATGGCATGT
AATGTATTGTCTCCGCCATAGGGTAGGCGTACGTGCATCTAGGTGTTTGATATACGC-------------AA--------
AGAAA-AAAAAAACTACTCCAACTATGCAGCCGTGCAGGATGTCAGGATCACGCCGGGATCCCGCACGAAACCGAGGGTC
CAAAACGAAAAGCACACACTTCCCCTGCCATGCGCCCCTTTATATCCCGCGCTCCTCTCCCCGCCAAACTCCACCACC--
--TCCTCCTTCCTCCCAAGTCCCAACGAACTCAGCAACAAGGAGGGAGCTAGACGAACACCAACCGAGCCAGGAAATGGA
GGACTTCTACTACTTCCCCAGCTCCTTGGAGACCTCTGAAATTGTCCACAGAGGGTTCCTCCCCGTCGTGCACTCCTCCC
CCCGCAACCGGAGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTCCCGCGACGACGCCGGCGAGCTCGGCCACCACTACCTC
GACGCCTGCTTCCGGTGCGGGCGGACAATCGCTGGAAACAAGGACATCTTCATGTACAGGTAAACATC-TTACGCCGTCA
TGCTCT-GGGTTTGACTGTGATGGTGGCATGTGCAAACGTGATTCTTTGCTGGCGCAGAGGCGACACCCCGTTCTGCAGC
GAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGACCCAAGAAGTCCGCGGCCGCGACGACGAC
GGAGCAGCAGTCGCAGCGGCAGAGCTCGCACAGAGTGCCCATCTGGGCTCGGTAGAAGCATCCATCGATCGATCTATCAA
ATGGCCTACTATGCTCGATGCTACTC--CATCCGTATAAACTTCAGGATTGTGGATGTATGCGGACCGACGTGACATGAG
CAGCTTGAGGGAGCTGGTTATATTCCCTATTGGAATACAGTTCTTGGAGGCAAAAGAAGATGGTCTCGTCTGGAA-CGCT
CACTATATGTGTGATTAACATGCTTTCTTCCTTGTGTGCGATCCCCATGTACTCCAAAATTTTGGCATGGAAGAAATAAG
ATCACCGAGGCAACCATCCATGGCGACTGTGTCCGGTCTGGTGTTGGAATACTA-TTATTTTTTAATTCACTTACTAG-T
CCGTGTCACATGCATGATGAATTTACAGGGAGA--CAGGTTTGCAACGAGTAACTGTACCACACCAAGTTACAAAATCCA
ACCATTATTCCCTCTCATGTGTCACCTTCATGTCCAGACTGGATTTCGTGTG-TTTTTTTCACTCAACGAACATGCCGAA
ACTCATGGCCGTTGTATACGCACAGGAGGGCCGTATCATCTAGCCGTATTATTCGCATTATTCTACACTAACATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACCGTATTATTCATGCCCACTGC
AGTGTTATCATTTTATTTTAATTTACTTTCTTGTGAATCATTGCAGTGT--TTAAGCTAGCAGCCTGGCTGGCATATATA
T-CACATATATGTCGATTTTCTGCAAAAGAATACATACATGTCACTTCACATGTTCCACGAGTTCAATTGAAAATACTTC
GTATCAGGATGCTGACGAGTGAGAATAGCACATAATTTCTCAACAACAATCCAGCACTGTGATTTAGCTGAAAAGTACCC
TTTGATTGGACTGGACGGATTAGAAGCAAGACCGGGGCAAAGCCCGTGTGATTTGTACGGAGGGCACACCACCATCAGAA
TCCGCAACATTGCACGACTACACTTT
>chr6A_1
ATGGGACTATTAGCAGATTCAACATATTTCACTCAATTCCTCGGTAACATGGATACCACATTGTACCACACCATGCTAAA
GGCTTGGGTCCTGTTAAAAGTAATTTTGCTTGGCTCCTCATCCCTAAGAGGGGTATAGGGGTTGATAGCCAAGGTGTCCA
AAATGTGGTTTATGCCCATATGCAAGCAAGTTCATGATTAGGAGGCTCACCTACCCTTTAGTTGCCTTAACTCGATGCAC
ATCTT---------------------------------------------------------------------------
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------------------------GGGAATATGGAGGAACGGGTTCGGGTCTTGAACTCCTACCATGTGAGGAACCCACA
ATGTTGTGGAAACATTGGCAGTTAGCCGTCATC-----------------------------------------------
-------------------------ACAAATGTGAGGCATTAGTGATCTATTTGGTGTTCATGCTAGTTTCTTGGTAGAT
TTTGGAATGAAGCGCAATGGTCGGCCTTTCGCACCATCTCCATCTTGCCCGGGTGCTGTTGGCGAAAATTAAGATCGAGA
TGGTTCTTTGAACGTTAAA-AGAAAATCAAACCACAATG-CCCCATACTCCAAATGATGATTTAGCTGCTTAACCTGATC
AAGCAAGGCATCCTCCAGCCAATGCTCTCCTTTCATTGGACTAGTGACACACAGAATTCTCCTGAACCTGAACCTGATTA
GGCTAGACTAGTTCTTTATTTCTCTTCCCATGTAAGGACCTTTGTATTTGTTTTACTCCTGCTCAATATATAGGCAGATG
ATCTGCCAGTTCCTCAAAAA----------------------------AGAATGTTAGTGCGCA-----TAATATTTTTT
ACGCAAAGTTCACTTATACTATAACATATTGTACATAATGTATTGTGGTATTAGGGCATCTTTAACGGCAACCCGGAAAT
TTCCCCAACATCCTTCCGTGGATAGGTACCAGACAAAATTCGATCAAACACGACCGGATTTCATATAAACACGGCCGGAT
TTCATATAAACATGACAAATTTCATTTAAACATGACGAATTTCATCTAAACATGATGGATTTCATTACATTTACATCAAC
TAAGCGGAGCTCGTCCGGCTATGTCTAAATGATCGTTGGCGCCCGTTCCCCGTGCCCCACCGTGAACCAAGAGAACTGAA
GCTTCGCATTTTTCATCTCCGCCTCGGCGCTTTCCAGCTCTGACTCTATAACCTCTGCCTCCGGAGCCACGGGAAGCGAA
GTTGTCCTCCTCCATGTCGACACCAAGCGGCTAATCGGCCGATGATGTTCAGCCCACCAAGCTTGGCGTAAACGGGAGGG
GAGGAGCGGTGCCCTTCCTCGGACCAGAGCAGCGGTGACTCAAGATGGCAATGAGGCCCCGAAACCCGCATCCCCGCGGG
TTTTTACCCTATTAGGGGACGGGGATGAGCGACTTTCTATCCCCGCGGGGCTGCTCGTGGGTACATTATAAAACCCGGCA
TGTTTCGCGGGTTTAAACCCATTTGAGTACTACCCGAACCCGAAACCCGACAAAACCCGTCAAAATACATTATTTAGCAC
GTACCGATCCATCTTGACTCAAGTGGCCCAAAGCCACAGTGCCTGAGCAGCCGAGCCCCACAGTGTCGAGGCCCTGGAGT
ACAGACCAACCCCTCGCTCGGTCTCTGCAGTGTTGCTCGCTCTTTAGGACTCTCTCTCTCCCGCACAACACGACACCTAA
TCCTAAACCTAGGTCCCCCAGCCGTCGCCTGCTGCTGTAATATGCTCCTGTTTTTCTTCCAAATGTTGTTGACTGCTCGT
GGGGATGGGTTCCCGTGGGTTTCTAAAATCCGATGGGTTTAGGGGATGGGCAAGAATTTAACCCCGCGCACGTTGATGGG
GACGGGGACGGGTTTGCGATTTTCTCGTGGGGATGGGTTTGGACAAGCAAAACCCGGTGGGTTTCGTCCCCGTTGCCATC
TTGAGCGGTGACCTTCCGTGCACTACTCTTCCTAACTGTCGGCGATGTGCGAGCTTCGTGGTCGTCGTGGCGGGGCACGG
ACTCGGCGATTTCCTCCTCCTTGTCGTCGGTCTCGGCAAACACCACCTCGCCCGCCTCATCTTCGCACTGCCAGCGGCCG
CCACGTCCGCCACCTGCTGCCGGTATCGCCAGCGGGCTAGGCGGAGCAGTAGGATTCGAGCAGTGCCTCCTGCTCCGCCA
TATTCGCGTCTGGCGCGACCGCTCTGCCGGCGGTGAGATGCTCTTGGAGGAGGTGGTGGTTGTGGGAGGCATCGGCCTGC
GCTTCCCGAAACTGCTCCTCCTGCTCCTCCCGCACCATGTCCATGTAATGGACACGGGCCTCGCCGATGGTTATGGTGCA
ATGCACCGGCGACGGGGGCACAGAGGAGGAGGAAGGTGGCTCGGAGGAGGAGGATAGTGGCGTCGTTTCATCGTCGGAAG
TGTCCTCCATTGGTCCGTAAAGCCCCCATATTTGTCTCCGCTTGTGGGAGAAATCGCGTTCGGACCGCTCCACGGACCGA
TACTAGCCCGCCTTGGATGGCTTCCGCTGTCAGGACAGCACGGTCCGGACGCGTGTGAGAGGTTTGTGTGTCGGTGTTGA
AGATGTCCGGATGATTTCATGCTTTTATGTTTTTCAGTT-----TAAATACAGTAAATTATGTGCATGTGCATGGCAAGT
AATGTAGTGTCTCCGCCACAGGATAGGCGTACGTGCATCTATGTGTTTGATATACGC-------------AAAGAAAGAA
AGAAA-GAAAGAACTACTCCAACTATGCAGCCGTACAGGATGTCAGGATCACGCCGGGATCCCGCACGAAACCCAGGGTC
CAAAACGAAAAGCACACACTTCCCCTGCCATGCGGCCCTTTATAACCCGCGCTCCTCTCCCCGCCAAACTCCACCACCTC
CTTCCTCCTTCC-------TCCCAACCAACCGAGCAACAAGGAGGGAGCTAGACGGACACCAACCGAGCCTGGAAATGGA
GGACTTCTACTACTTCCCCAGCTCCCTGGAGACCTCTGAAATTGTCCACAGAGGGTTCCTCCCCGTCGTGCACTCCTCCC
CCCGCAACCGGAGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTCCCGTGACGACGCCGGCGAGCTCGGGCACCACTACCTC
GACGCCTGCTTCCGGTGCGGGCGGACAATCGCTGGAAACAAGGACATCTTCATGTACAGGTAAACATC-TTACGCCGTCA
TGCGCTGGGGTTTGACTGCGATGGTGGCATGTGTAAACGTGATTCTTTGCTGGCGCAGAGGCGACACCCCGTTCTGCAGC
GAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGATCCAAGAAGTCCGCGGCCGCGACGACGAC
GGAGCAGCAGTCGCAGCGGCAGAGCCCGCACAGAGTGCCCGTCTGGGCTCGGTAGAAGCGTCCATGG--------ATCAA
ATGGCCTACTGTGCTCGACACTCCTC--CGTCCATATAGGCTTCAGGATTGTGGATGTATGCGGACCGACGTGATATGAG
CAGCTTGAGGGAGCTGGTTATATTCCATATTGGAATACAGTTCTTGGAGGCAAAAGAAGATCGTCTCGTCTGGAAACGCT
CATTATATGTGTGATTAACATGCTTTCTTCCTTGTGTGCGATCCCCATGTAGTCCAAAATTTTGGCATGGAAGAAATAAG
ATCACCGAGGCTCCCATCCATGGCGATTGTGTCCGGTCTGATGTTGAAATACTATTATTTTTTTAATTCACTTACTAGTT
CCGTGTCACATGCATGACGAATTTACAGGGAGA--CAGGTTTGCAACGAGTAACTGTACCACCAGAGTTGAAGAAATCCA
ACCATTATTCCCTCTCATGTGTCACCTTCATGTCCAGACTGGATTTCGTGTTTTTTTTTTCACTCAACGAACATGCCGAA
GCTCATGGTCGTTGTATACGCACAGGAGGGCCGTATCATCTAGCCGTATTATTCGCATTATTCTACACTG----------
---------------------------------------------------TATATAACCGTATGATTCATGTCCACTGC
AGTGTTATTATTTTATTTTAATTTATTTTTTTGCGAATCATTGCAGTGTTGTTAAGCTAGCAGCCTGGCTGGCATATATA
TACACATATATGTCGATTTTCTGCAAAAGAATACATACATGTCACTTCAGGCGTTCCACGAGTTCAATTGAAAATACATC
GTATCAGGATACAGACGAGTGAGAATAGCACATAATTTCTCAGCAACAATCCATCACTGCGATTTAGCTGAAAAGTACCC
TTTGATTGGACTGGACGGGTTAGAAGCAAGACCGGGGCAAAGCCCGTGTGATTAGTACGGAGGGCACACCACCATCGGAA
TCCGCAACATTGCACGACTACACTTT
>chr6B_129
AGGGAG--------------------------------------------------------------------------
-----------------------------------------------------TATATGTGTTGATAGCCTAGGTTTTCA
AACTGTGGTCTATGCCCATATGCAAGCAAGTTCATGAGTACGAGGCTCATCTATCCTTTTGTTGTCATAACTCGATGCAC
ATGTTTCCTCAAAAAAAAAAATCTCGAATACATACAAGCATGCGTATCATTCATTAAAGAAGGAGGAAAGACTCCCCAAG
TCATAATTACAAGAGTTATTTACATGCCGGATTCTCCGACACCACCCACACACACTCAAGTCAGACTACACCCTGCGTCT
CCTCCTCCCACCATACTACCTGTGGGGAATATGGAGGAACGGGTCCGGGTCTTGAACTCCTACCATGTGAGGAACCCACG
CTGTTGTGAGAAAATTGGCAGTTAGCCATCATCACAAGTGCAAGACTTTTTCTTTACCCTGTGGCCGTAGAACAATTGTT
CTACAGTATATTTCATGAATTAAATACAAATGTGAGGCATTAGTGATCTATTTGGTGTTCATGCTAGTTTCTTGGTAGAT
TTTGGAATGAAGTGCGATGCTCGGCCTTTTGCACCATCTCCACCTTGCCGGGGTGCTATTCG---AAATTAAGACTGAGG
TGGTTCTTTGAACGTTAAACAGAAAATCAAACCACGATG-CCCG-TACTCAAAATGATGGTTTAGCTCCTTATACCATTC
ACATATGTTTAAGCAGTGGCGGACCAAGAAATAAAATGCAGGGTGTGCACACTTCAAAAAATCAATGTATATTTTCATTG
GCTTGAATGGGCCTTAAAAATCAACTAATTATTAGATGGTAAAAGAACATTTTCCAAAATTCTGGGTGTGCCATGGCACA
CATGGCACACCCCCTAGATATGCCACTGTGTTTAAGAAAGGCATACGTAGAATGTTACCGCGCATGATTTTTTTTTTTTG
ATGCAAAGTTCACTTATATAATAA---ATTGTACATAATGTATTGTGGTGTTACAA------------------------
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----------ATGATTTCATGCTTTTATGTTTTTTAGTT-----TAAACACACTAAATTATGTGCATGTGCATGGCATGT
AATGTAGTGTCTCCGCCACTGGATAGGCGTACGTGCATCTAGGTGTTTGATATACGCTACACAAAGAAAGAAAGAAAGAA
AGAAAGAAAAGAACTACTCCAACTACGCAGCCGTACAGGATATCAGAATCACGGCGGGATCCCGGACGAAACAGAGGGTC
CAAAACGAAAAGCACACACTTCCCCTGCCATGCGCCCCTTTATAACCCGCGCTCCTCTCCCCGGCAGACTCCACAACC--
--TCCTCCTTCC-------TCCCAACCAACCCAGCAACAGGGAAGGAGCTAAACGGCAACCAACCGAGCCAGGAAATGGA
GGACTTCTACTACTTCCCCAGCTCCTTGGAGACTTCTGAAATTGTCCACAGAGGGTTCCTCCCCGTCGTGCACTCCTCCC
CCCGCAACCGGGGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTTCCGTGACGACGCCAGCGAGCTCGGCCACCACTACCTC
GATGCCTGCTTCCGGTGCGGGCGGACACTCGCTGGAAACAAGGACATCTTCATGTACAGGTAAACATCTTTACGCCGTCA
TGCGCT-GGGTTTGACTGTGATGGTGGCATGTGTAAACGTGATTCTTTGCTGGCGCAGAGGCGACACCCCGTTCTGCAGC
GAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGATCCAAGAACTCCGCGGCCGCGACGACGAC
AGAGCAGCAGTCGCAGCGGCAGAGCTCGCACAGAGTGCCCGTCTGGGCTCGGTAGAAGCATCCATCGATCGATCTATCAA
ATGGCCTAATATGCTCGATGCTACTCTCCATCCATACAAACTTCAGGATTGTGGATATATGCGGACCGACGTGATATGAG
CAGCTTGAAGGAGCTGATTATATTCCCTATTGGGATACAGTTCTTGGAGGCAAAAGAAGATCGTCTCGTCTGGA-ACGCT
CATTATATGTGTGATTAACATGCTTTCTTCCTTGTGTGCGATTCCCATGTAGTCCAAAATTTTGGCATGGAAGAAATAAG
ATCACCGAGGCTCCAATCCATGGCGATTGTGTCCGGTTTCATGTTGAAATG---TTTTTTTTTTACTTCACTTACTAG-T
CCGTGTCACATGCATGAGGAATTTACAGGGAGTGGCAGTTTTGCAACGAGTAGCTGTACCACCAG-GTTGACAAAATCCA
ACCATTATTCACTCTCATGTGTCACCAG---GTCCAGACTGGAATTTATGGT-TTTTTTTCCCTCAACGAACAGGCCGAA
ACTCATGGTCGTTGTATACGCACAGGAGG-CCGTATCATCTAATCGTATTATTC--------------------------
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>SNPs
------S--------S---------------------------------S----S------------S--S-S-------
-----------S-S-S--------------------------SS-------------SS-----------S---------
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----S---------------------------------------------------------------------------
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-----------------------------------S---------S----------------------------------
---SS---------------------------------------------------------------------------
------------------------------------S-------------------SSS---------------------
-------------S------------------------------------------S-----S---------S-------
--------------------------------S------S---------------------------S---S--------
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-------------------------------------------S--S---------S--------------------S--
-----------------------S-----SS-SS---S------------------------------------------
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------------------------------------SSSSSSSS------------------------------------
------S-----------S---S---------------------------------------------------------
----------S-----------------------S---------------------------------------------
--------------------------------------------S-----------------------------------
------------SSSSSSS-------S---S------------------------S------------------------
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----------------------------------------------S---------------------------------
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---S-----------------------------S----------------------------------------------
---------------------------------------------------S----------------------------
----------------------------------------S---------------------------------------
---------------------------------S----------------------------------------S-----
-------------------------------------------------------------S------------------
--S------------------------------------------------S----------------------------
-----------SS-------------S-------------S-----S----------S----------------------
-----------------S--------------------------------------------SSS-SS-S----------
---------------------------------------------------S----------------------------
--------S------------------------------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------S-------
--------S----------------S---S---S----------------------------------------------
-------------------------------------------------SSS-------------------------S--
----------S-S-----------------------------S----------S-----S--------------------
------------------S----------------------------------S----------------------S---
--------------------------
>forward_3085
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-------------------------TGCCATGCGCCCCTTTATAT-----------------------------------
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>reverse_4579
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------------------ATTAGAAGCAAGACCGGGGC------------------------------------------
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