>input_sequence_79677
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-------------------ATGGAGGACTTCTACTACTTCCCCAGCTCCTTGGAGACTTCTGAAATTGTCCACAGAGGGT
TCCTCCCCGTCGTGCACTCCTCCCCCCGCAACCGGGGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTTCCGTGACGACGCC
AGCGAGCTCGGCCACCACTACCTCGATGCCTGCTTCCGGTGCGGGCGGACACTCGCTGGAAACAAGGACATCTTCATGTA
CAGGTAAACATCTTTACGCCGTCATGCGCT-GGGTTTGACTGTGATGGTGGCATGTGTAAACGTGATTCTTTGCTGGCGC
AGAGGCGACACCCCGTTCTGCAGCGAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGATCCAA
GAACTCCGCGGCCGCGACGACGACAGAGCAGCAGTCGCAGCGGCAGAGCTCGCACAGAGTGCCCGTCTGGGCTCGGTAG-
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>chr6B_1_TraesCS6B01G289300
TCCTACCATGTGAGGAACCCACGCTGTTGTGAGAAAATTGGCAGTTAGCCATCATCACAAGTGCAAGACTTTTTCTTTAC
CCTGTGGCCGTAGAACAATTGTTCTACAGTATATTTCATGAATTAAATACAAATGTGAGGCATTAGTGATCTATTTGGTG
TTCATGCTAGTTTCTTGGTAGATTTTGGAATGAAGTGCGATGCTCGGCCTTTTGCACCATCTCCACCTTGCCGGGGTGCT
ATTCG---AAATTAAGACTGAGGTGGTTCTTTGAACGTTAAACAGAAAATCAAACCACGATG-CCCG-TACTCAAAATGA
TGGTTTAGCTCCTTATACCATTCACATATGTTTAAGCAGTGGCGGACCAAGAAATAAAATGCAGGGTGTGCACACTTCAA
AAAATCAATGTATATTTTCATTGGCTTGAATGGGCCTTAAAAATCAACTAATTATTAGATGGTAAAAGAACATTTTCCAA
AATTCTGGGTGTGCCATGGCACACATGGCACACCCCCTAGATATGCCACTGTGTTTAAGAAAGGCATACGT---------
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----------------------------------------------------------------------------AGAA
TGTTACCGCGCATGATTTTTTTTTTTTGATGCAAAGTTCACTTATATAATAA---ATTGTACATAATGTATTGTGGTGTT
ACAA----------------------------------------------------------------------------
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--------------------------------------ATGATTTCATGCTTTTATGTTTTTTAGTT-----TAAACACA
CTAAATTATGTGCATGTGCATGGCATGTAATGTAGTGTCTCCGCCACTGGATAGGCGTACGTGCATCTAGGTGTTTGATA
TACGCTACACAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAACTACTCCAACTACGCAGCCGTACAGGATATCAGAATCAC
GGCGGGATCCCGGACGAAACAGAGGGTCCAAAACGAAAAGCACACACTTCCCCTGCCATGCGCCCCTTTATAACCCGCGC
TCCTCTCCCCGGCAGACTCCACAACCTCCTCCT-------TCCTCCCAACCAACCCAGCAACAGGGAAGGAGCTAAACGG
CAACCAACCGAGCCAGGAAATGGAGGACTTCTACTACTTCCCCAGCTCCTTGGAGACTTCTGAAATTGTCCACAGAGGGT
TCCTCCCCGTCGTGCACTCCTCCCCCCGCAACCGGGGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTTCCGTGACGACGCC
AGCGAGCTCGGCCACCACTACCTCGATGCCTGCTTCCGGTGCGGGCGGACACTCGCTGGAAACAAGGACATCTTCATGTA
CAGGTAAACATCTTTACGCCGTCATGCGCT-GGGTTTGACTGTGATGGTGGCATGTGTAAACGTGATTCTTTGCTGGCGC
AGAGGCGACACCCCGTTCTGCAGCGAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGATCCAA
GAACTCCGCGGCCGCGACGACGACAGAGCAGCAGTCGCAGCGGCAGAGCTCGCACAGAGTGCCCGTCTGGGCTCGGTAGA
AGCATCCATCGATCGATCTATCAAATGGCCTAATATGCTCGATGCTACTCTCCATCCATACAAACTTCAGGATTGTGGAT
ATATGCGGACCGACGTGATATGAGCAGCTTGAAGGAGCTGATTATATTCCCTATTGGGATACAGTTCTTGGAGGCAAAAG
AAGATCGTCTCGTCTGGA-ACGCTCATTATATGTGTGATTAACATGCTTTCTTCCTTGTGTGCGATTCCCATGTAGTCCA
AAATTTTGGCATGGAAGAAATAAGATCACCGAGGCTCCAATCCATGGCGATTGTGTCCGGTTTCATGTTGAAATG---TT
TTTTTTTTACTTCACTTACTAG-TCCGTGTCACATGCATGAGGAATTTACAGGGAGTGGCAGTTTTGCAACGAGTAGCTG
TACCACCAG-GTTGACAAAATCCAACCATTATTCACTCTCATGTGTCACCAG---GTCCAGACTGGAATTTATGGT-TTT
TTTTCCCTCAACGAACAGGCCGAAACTCATGGTCGTTGTATACGCACAGGAGGCCGTATC--------------------
----------------------------------------------------------------------------ATCT
AATCGTATTATTCATGTCCACTGTACTAGTGTTGTTATTTATTATATCTTATTTTATTGCG-ATCTTTGCGATGTTGTTA
AGCTAACAGCCTAGCTGGCATAC----ACACATATATGTGGATTTTCTGCGAAAGAATACTGAATACATACATGTCACTT
CACGCGCTCCACGAGTTCAATTGAAAATATATACACTTCGTATCAGGATACAGAGAGTCAGA---AGCACATAATTTCTC
AACAATTGAGCTAAAAAGT------------AAGTACCTTATGATTGGACGGTTCAGAGGCACGACGAAAGAGACCGCAA
GCCAGTGTGATTTGTACGGAGTCA----CACCTTCGGAGTCCGTAACATTGGTGAACTACACTTTACC-----------G
CG----CCATCGGAGTACTTATCAAAGTGGACTTTGGAGTTAACAAACCGGCCAAAGTGCCAAACTTCACTCACAATATA
CTACTACTACTACTACTAAGCTTA
>chr6D_1
TCCTACCATGTGAGGAACCCACACTGCCGTGAGAAAATTGGCAGTTAGCCATCATC------------------------
------------------------------------------------ACAAATGTGAGCCATTAGTGATCTATTTGGTT
GCCATGCTAGTTTCTTGGTAGATTTTGGAATGAAGCACGATGCTCGGCCTTTCGCACCATCTCCACCTTGCCCGGGTGCC
GTTGGAGAAAATTAATATCGAGATGGTTCTTTGAACGTTAAA-AGAA-ATCAAACAACAATGCCCCCATACTCCAAATGA
TGGTTTAGCTACTTGTACTATTCACATA----------------------------------------------------
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---------------------------------------------------TGTTTAAGAAAGGCACACAT---------
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----------------------------------------------------------------------------AGAA
TGTTGGT--GCA-----TTTTTTTTCTTATGCAAAGTTCACTTATACAATAT---ATATTGTATAT---------GTGTT
ACAA----------------------------------------------------------------------------
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--------------------------------------ATGATTTCATGCTTTTATGTTTTTCATCAGTTTATAAACACA
CTAAATTATGTGCATGTGCATGGCATGTAATGTATTGTCTCCGCCATAGGGTAGGCGTACGTGCATCTAGGTGTTTGATA
TACGC-----AA--------AGAAA---------AAAAAAACTACTCCAACTATGCAGCCGTGCAGGATGTCAGGATCAC
GCCGGGATCCCGCACGAAACCGAGGGTCCAAAACGAAAAGCACACACTTCCCCTGCCATGCGCCCCTTTATATCCCGCGC
TCCTCTCCCCGCCAAACTCCACCACCTCCTCCTTCCTCCCAAGTCCCAACGAACTCAGCAACAAGGAGGGAGCTAGACGA
ACACCAACCGAGCCAGGAAATGGAGGACTTCTACTACTTCCCCAGCTCCTTGGAGACCTCTGAAATTGTCCACAGAGGGT
TCCTCCCCGTCGTGCACTCCTCCCCCCGCAACCGGAGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTCCCGCGACGACGCC
GGCGAGCTCGGCCACCACTACCTCGACGCCTGCTTCCGGTGCGGGCGGACAATCGCTGGAAACAAGGACATCTTCATGTA
CAGGTAAACATC-TTACGCCGTCATGCTCT-GGGTTTGACTGTGATGGTGGCATGTGCAAACGTGATTCTTTGCTGGCGC
AGAGGCGACACCCCGTTCTGCAGCGAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGACCCAA
GAAGTCCGCGGCCGCGACGACGACGGAGCAGCAGTCGCAGCGGCAGAGCTCGCACAGAGTGCCCATCTGGGCTCGGTAGA
AGCATCCATCGATCGATCTATCAAATGGCCTACTATGCTCGATGCTACTC--CATCCGTATAAACTTCAGGATTGTGGAT
GTATGCGGACCGACGTGACATGAGCAGCTTGAGGGAGCTGGTTATATTCCCTATTGGAATACAGTTCTTGGAGGCAAAAG
AAGATGGTCTCGTCTGGAA-CGCTCACTATATGTGTGATTAACATGCTTTCTTCCTTGTGTGCGATCCCCATGTACTCCA
AAATTTTGGCATGGAAGAAATAAGATCACCGAGGCAACCATCCATGGCGACTGTGTCCGGTCTGGTGTTGGAATACTA-T
TATTTTTTAATTCACTTACTAG-TCCGTGTCACATGCATGATGAATTTACAGGGAGA--CAGGTTTGCAACGAGTAACTG
TACCACACCAAGTTACAAAATCCAACCATTATTCCCTCTCATGTGTCACCTTCATGTCCAGACTGGATTTCGTGTG-TTT
TTTTCACTCAACGAACATGCCGAAACTCATGGCCGTTGTATACGCACAGGAGGGCCGTATCATCTAGCCGTATTATTCGC
ATTATTCTACACTAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
AACCGTATTATTCATGCCCACTGCAGTGTTATC--ATTTTATTTTAATTTACTTTCTTGTGAATCATTGCAGTGT--TTA
AGCTAGCAGCCTGGCTGGCATATATAT-CACATATATGTCGATTTTCTGCAAAAGAATAC-------ATACATGTCACTT
CACATGTTCCACGAGTTCAATTGAAAAT------ACTTCGTATCAGGATGCTGACGAGTGAGAATAGCACATAATTTCTC
AACAACAATCCAGCACTGTGATTTAGCTGAAAAGTACCCTTTGATTGGACTGGACGGATTAGAAGCAAGACCGGGGCAAA
GCCCGTGTGATTTGTACGGAGGGCACACCACCATCAGAATCCGCAACATTGCACGACTACACTTTGCTCGCACCTAAAAG
CACGAACCATTGGAGTACTTATCAAAGTGGACTTTGGAGTTAACAAACCGGCCAAAGGTCCAAACTT-------------
------------------------
>chr6A_129
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------------------------------------------------ACAAATGTGAGGCATTAGTGATCTATTTGGTG
TTCATGCTAGTTTCTTGGTAGATTTTGGAATGAAGCGCAATGGTCGGCCTTTCGCACCATCTCCATCTTGCCCGGGTGCT
GTTGGCGAAAATTAAGATCGAGATGGTTCTTTGAACGTTAAA-AGAAAATCAAACCACAATG-CCCCATACTCCAAATGA
TGATTTAGCTGCTTAACC--------------------------------------------------------------
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---------------------------------------------------TGATCAAGCAAGGCATCCTCCAGCCAATG
CTCTCCTTTCATTGGACTAGTGACACACAGAATTCTCCTGAACCTGAACCTGATTAGGCTAGACTAGTTCTTTATTTCTC
TTCCCATGTAAGGACCTTTGTATTTGTTTTACTCCTGCTCAATATATAGGCAGATGATCTGCCAGTTCCTCAAAAAAGAA
TGTTAGTGCGCA-----TAATATTTTTTACGCAAAGTTCACTTATACTATAACATATTGTACATAATGTATTGTGGTATT
AGGGCATCTTTAACGGCAACCCGGAAATTTCCCCAACATCCTTCCGTGGATAGGTACCAGACAAAATTCGATCAAACACG
ACCGGATTTCATATAAACACGGCCGGATTTCATATAAACATGACAAATTTCATTTAAACATGACGAATTTCATCTAAACA
TGATGGATTTCATTACATTTACATCAACTAAGCGGAGCTCGTCCGGCTATGTCTAAATGATCGTTGGCGCCCGTTCCCCG
TGCCCCACCGTGAACCAAGAGAACTGAAGCTTCGCATTTTTCATCTCCGCCTCGGCGCTTTCCAGCTCTGACTCTATAAC
CTCTGCCTCCGGAGCCACGGGAAGCGAAGTTGTCCTCCTCCATGTCGACACCAAGCGGCTAATCGGCCGATGATGTTCAG
CCCACCAAGCTTGGCGTAAACGGGAGGGGAGGAGCGGTGCCCTTCCTCGGACCAGAGCAGCGGTGACTCAAGATGGCAAT
GAGGCCCCGAAACCCGCATCCCCGCGGGTTTTTACCCTATTAGGGGACGGGGATGAGCGACTTTCTATCCCCGCGGGGCT
GCTCGTGGGTACATTATAAAACCCGGCATGTTTCGCGGGTTTAAACCCATTTGAGTACTACCCGAACCCGAAACCCGACA
AAACCCGTCAAAATACATTATTTAGCACGTACCGATCCATCTTGACTCAAGTGGCCCAAAGCCACAGTGCCTGAGCAGCC
GAGCCCCACAGTGTCGAGGCCCTGGAGTACAGACCAACCCCTCGCTCGGTCTCTGCAGTGTTGCTCGCTCTTTAGGACTC
TCTCTCTCCCGCACAACACGACACCTAATCCTAAACCTAGGTCCCCCAGCCGTCGCCTGCTGCTGTAATATGCTCCTGTT
TTTCTTCCAAATGTTGTTGACTGCTCGTGGGGATGGGTTCCCGTGGGTTTCTAAAATCCGATGGGTTTAGGGGATGGGCA
AGAATTTAACCCCGCGCACGTTGATGGGGACGGGGACGGGTTTGCGATTTTCTCGTGGGGATGGGTTTGGACAAGCAAAA
CCCGGTGGGTTTCGTCCCCGTTGCCATCTTGAGCGGTGACCTTCCGTGCACTACTCTTCCTAACTGTCGGCGATGTGCGA
GCTTCGTGGTCGTCGTGGCGGGGCACGGACTCGGCGATTTCCTCCTCCTTGTCGTCGGTCTCGGCAAACACCACCTCGCC
CGCCTCATCTTCGCACTGCCAGCGGCCGCCACGTCCGCCACCTGCTGCCGGTATCGCCAGCGGGCTAGGCGGAGCAGTAG
GATTCGAGCAGTGCCTCCTGCTCCGCCATATTCGCGTCTGGCGCGACCGCTCTGCCGGCGGTGAGATGCTCTTGGAGGAG
GTGGTGGTTGTGGGAGGCATCGGCCTGCGCTTCCCGAAACTGCTCCTCCTGCTCCTCCCGCACCATGTCCATGTAATGGA
CACGGGCCTCGCCGATGGTTATGGTGCAATGCACCGGCGACGGGGGCACAGAGGAGGAGGAAGGTGGCTCGGAGGAGGAG
GATAGTGGCGTCGTTTCATCGTCGGAAGTGTCCTCCATTGGTCCGTAAAGCCCCCATATTTGTCTCCGCTTGTGGGAGAA
ATCGCGTTCGGACCGCTCCACGGACCGATACTAGCCCGCCTTGGATGGCTTCCGCTGTCAGGACAGCACGGTCCGGACGC
GTGTGAGAGGTTTGTGTGTCGGTGTTGAAGATGTCCGGATGATTTCATGCTTTTATGTTTTTCAGTT-----TAAATACA
GTAAATTATGTGCATGTGCATGGCAAGTAATGTAGTGTCTCCGCCACAGGATAGGCGTACGTGCATCTATGTGTTTGATA
TACGC-----AAAGAAAGAAAGAAA---------GAAAGAACTACTCCAACTATGCAGCCGTACAGGATGTCAGGATCAC
GCCGGGATCCCGCACGAAACCCAGGGTCCAAAACGAAAAGCACACACTTCCCCTGCCATGCGGCCCTTTATAACCCGCGC
TCCTCTCCCCGCCAAACTCCACCA---CCTCCTTCCTCCTTCCTCCCAACCAACCGAGCAACAAGGAGGGAGCTAGACGG
ACACCAACCGAGCCTGGAAATGGAGGACTTCTACTACTTCCCCAGCTCCCTGGAGACCTCTGAAATTGTCCACAGAGGGT
TCCTCCCCGTCGTGCACTCCTCCCCCCGCAACCGGAGCTCGCCGTCGCCGAGGCCCCGGCGCGGGTCCCGTGACGACGCC
GGCGAGCTCGGGCACCACTACCTCGACGCCTGCTTCCGGTGCGGGCGGACAATCGCTGGAAACAAGGACATCTTCATGTA
CAGGTAAACATC-TTACGCCGTCATGCGCTGGGGTTTGACTGCGATGGTGGCATGTGTAAACGTGATTCTTTGCTGGCGC
AGAGGCGACACCCCGTTCTGCAGCGAGGAGTGCCGGCAGCAGCAGATCGACACCGACGAGGCGGCGGAGAAGAGATCCAA
GAAGTCCGCGGCCGCGACGACGACGGAGCAGCAGTCGCAGCGGCAGAGCCCGCACAGAGTGCCCGTCTGGGCTCGGTAGA
AGCGTCCATGG--------ATCAAATGGCCTACTGTGCTCGACACTCCTC--CGTCCATATAGGCTTCAGGATTGTGGAT
GTATGCGGACCGACGTGATATGAGCAGCTTGAGGGAGCTGGTTATATTCCATATTGGAATACAGTTCTTGGAGGCAAAAG
AAGATCGTCTCGTCTGGAAACGCTCATTATATGTGTGATTAACATGCTTTCTTCCTTGTGTGCGATCCCCATGTAGTCCA
AAATTTTGGCATGGAAGAAATAAGATCACCGAGGCTCCCATCCATGGCGATTGTGTCCGGTCTGATGTTGAAATACTATT
ATTTTTTTAATTCACTTACTAGTTCCGTGTCACATGCATGACGAATTTACAGGGAGA--CAGGTTTGCAACGAGTAACTG
TACCACCAGAGTTGAAGAAATCCAACCATTATTCCCTCTCATGTGTCACCTTCATGTCCAGACTGGATTTCGTGTTTTTT
TTTTCACTCAACGAACATGCCGAAGCTCATGGTCGTTGTATACGCACAGGAGGGCCGTATCATCTAGCCGTATTATTCGC
ATTATTCTACACTG-------------------------------------------------------------TATAT
AACCGTATGATTCATGTCCACTGCAGTGTTAT--TATTTTATTTTAATTTATTTTTTTGCGAATCATTGCAGTGTTGTTA
AGCTAGCAGCCTGGCTGGCATATATATACACATATATGTCGATTTTCTGCAAAAGAATAC-------ATACATGTCACTT
CAGGCGTTCCACGAGTTCAATTGAAAAT------ACATCGTATCAGGATACAGACGAGTGAGAATAGCACATAATTTCTC
AGCAACAATCCATCACTGCGATTTAGCTGAAAAGTACCCTTTGATTGGACTGGACGGGTTAGAAGCAAGACCGGGGCAAA
GCCCGTGTGATTAGTACGGAGGGCACACCACCATCGGAATCCGCAACATTGCACGACTACACTTTGCTCGCACCTAAAAG
CG----CCATCGGAGCACTTATCAAAGTGGACTTTGGAGTTAACAAACCGGCCAAAGGTCCAAACTTCACTCGCAA----
------------------------
>SNPs
----------------------S---SS----------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
-----------------------------------S----------------S-------------------S-------
S--S-------------SS---S-------------------S---------------S-------S------S------
----------S-------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S----------
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-----SS-----SSSSS----------S------------------S---------------------------------
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--------------------------------------------------------------S-----------------
-----------------------------------------------S--------------------------------
-----SSSSS---------------SSSSSSSSS-------------------S---------------S----S-----
-S----------S-------S-----------------------------------------------------------
-----------S--S-------S----------------------------------------S---S-------S----
SS-------------------------------------------------------S----------------------
-----------------------------------S------------------------------S-------------
S-------------------------S------------------------S----------------------------
------------S-------------------------------------------------------------------
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---S--------------------S-------------------------------------------------------
--------------------------------S-----------------SS--------S-------------------
S-------------------------------S-------S----------------S----------------------
------------------------------------------------------------------S-------------
--------------------------------------S----------------------S-S----------S-----
---------S-------------------------------S--------------SSS---S-------------S---
----------------------------------S---------------SS---------------S--SS--S-----
-----S-----------S-----------------------------------S-SSSSS--------------------
------------------------------------------------------------------------------S-
--S--------------------S-S-SS-S-SS-SS------S--SS-------S---------S----SS--------
-----S------S---------S----------------S----------S---------SSSSSSS-------------
------S---------------------SSSSSS--------------------SSSSSSSS------------------
-----SSSSS-SSS-SS---------------------S-S---------S-SS-S--SSSSSSS-S-S-SS-SSSSS--
---S-----------------SSS--------S-----S----S-------SSSS----------S-S------------
---------------------------------------------------------SS-------------S---SSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_99
-------------------------------------------------------------------------------C
CCTGTGGCCGTAGAACAAT-------------------------------------------------------------
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>reverse_3846
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-----CCTCAACGAACAGGCCGAAA-------------------------------------------------------
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