>input_sequence_79670
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-----------------------------------ATGGAATCCTCCCAAATCACCGGGGATGGCGGCGAAGAGTGCAAC
AGCAATGAATCCGGGTGGACAATATACCTGACCTCCCCCACAAGCAGCTATGAAGCAAAAGAGAATGGCAGTGAAGGGAG
CAATGTTGAAGATGGCAGTGGCTACATCACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCGGATGATGATGGAGATT
ATGATTCCCTGGCGTCTGATGCTTCCACAGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAGGATCGTCAG
ACAAATCATGGTTCCAGCAATGAACATGTCAAGGATGAACAAGCTGAGACACTTACCAAGTTCTCGACAGGCAGCAACAA
AAAGGCGGGCAAGGTGAAGAAAGGGGACGAGAAAAGCAGCAAAAGAGGCCACAGTAGAAGACGTAGCTCATCAAGAACAA
GCTTCTTTTGGTAA------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G258600
TATCAAGCACTTTCTGATGTTCCAATCAACCTGTAACATTTCACCATATCCACCACGGATGCTCTCACCGTATCTCCCTC
CGGCCTGCAACAGCAGAGTTCTTGCTTGCCCAGATGGCAACGATGACAGTATCAGCACATGAGAAATCCAGTGGCTCTGG
GCCTAATTGCTCATCCACCGTCTACATGTAGCACGTAC---GTACTAATACCAAAGCAAACAAAAGACATGTTCTCCTGG
TCCTGCAGACTGTTGTTGAAGTGGAGATACGCCGTGAGCAAGCTAGGCATTTGGCATGCATGGATGACAGGCAGACACAG
CAGCGACAGGGGGCCTTTTGAGCTATGCCAGCCTCATGCTTAACCTTCTAATCTAATGCTAATAAATCATGGGCTAACCA
AACCCAGGCAGCCAGGCAGGTGCATCTAATCTCCCC--AGGC----CTATCTGCCAGGCCCCCACCATGAGGGCGAGGCG
CTACGGCCACATGGACTACAGATGGAAATACCTGTAACACTGCGTTGCAAGCGAAATGGTT--------TGCTCCTCCCT
CC---------TTGGCTTTGGTGACAAGAGAAGAGAGGGTACGCAAATGGTTGGGGAAAGTTATGGGTGACAGTTGGAGC
TTGCGAGGATAGGCCACCCTTTCCCATTTAAACACACTGCCATCCTTTCTGCGGTTCCTTCACACACCTCCACCCCCAAA
CACACCATAGCCATACACACGGCCCAGCCCTGAAGAATTCTTGCCCCCCCTCAA--------------------------
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-----------------------CTCCTTCTGAATTCTTGATCCTTTGAAGAGGGCTGATTGCTGGAGGATCTGGTGCTC
TTCTCGGGTTATGGGTGCTCAAGAGGCATAGGCAAGAACAGTGCCATCTTCAGTGCTGCATTGTTGAGGATATTCAGATT
TCGGGAGAAGCATAAGAGTAGGTGCTCGCAGAATTCTCCCTCGACCTTGTTCTGCCTTGTTTCCATTCTTGGCCATTCTT
GTCTCTCTTTTGGTCTTCCACTCCGATCGCCTGTCATGGAATCCTCCCAAATCACCGGGGATGGCGGCGAAGAGTGCAAC
AGCAATGAATCCGGGTGGACAATATACCTGACCTCCCCCACAAGCAGCTATGAAGCAAAAGAGAATGGCAGTGAAGGGAG
CAATGTTGAAGATGGCAGTGGCTACATCACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCGGATGATGATGGAGATT
ATGATTCCCTGGCGTCTGATGCTTCCACAGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAGGATCGTCAG
ACAAATCATGGTTCCAGCAATGAACATGTCAAGGATGAACAAGCTGAGACACTTACCAAGTTCTCGACAGGCAGCAACAA
AAAGGCGGGCAAGGTGAAGAAAGGGGACGAGAAAAGCAGCAAAAGAGGCCACAGTAGAAGACGTAGCTCATCAAGAACAA
GCTTCTTTTGGTAACTGATGTAAAAACCTTGCTCATCTATTTCTTTCTTATTATCAAGCTAGAATCAATGTCAGAGGCAT
GAGGAATTGAAGGCCTTGTGATGGTCCCTGCTATTGCCTTCTGCTGTTTTGTCCATTTGTTAGCCACCTCATAGGTTAGT
TCTTCCTGTGCAAATCTGTCACCCTTTCATTATTATTCATTACCCTATTCGTAATATCGACATTCAAGCACTGCATGCTC
TCCTATGTTTCTATAGACATTAATGATCACTTTGTCCAGATACACCTCCCCAATGAGGTG-TTGAGGCCACCAACCCAAA
AAGATAATTCGGTTCAATGGCCTTCTGCTTTCCCAAAAAAATTATAGGTCAGAATATCTGCATGTGTTAAAATTTAC-TC
AGAAAAGGCGTATATAGAAATCTGCTTTATCGTGTGTCTGTCAATAATCTTTTCACGTTTGGTGAGCAATCTAATAT---
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------------------------------------------A---GTATTGTCTATCAGTTAAGTTATATGAACAGCCG
TAGAGCAAAAATTAATAGGATTTACACAAATCTCCTTAACACATCTTTCTTACCCTTGAGTAAAGCAAATCCTATCATAT
ATAGTAGATCAATCTTACTACAACTGATGCAGCATTTGCACATGAAACCTAGGAATATCCGGCCCTTCCAT--AAGAAGC
ATTAGACAATGTACAGTACATTTATAAACAATAAGATGTAGAAGATTTAAACAAGACGAACCAACAATGTACTGTACAAG
CAAGTGTAGTTTACAGAACAGCTTAAGTAGACATGACAAGTAATACAAGGTACAAGAGCCTCCAGCTATCACCTGATATG
TGCAGTTCCTACTCTTTGCGTCTACAGTAGTTCCCTCCCAACAGTACTAGCAGCAGTAGCATATGGAGCACCTGCTGCTG
GGCAAATGATGCGAAAGAAGGTATTACGTCCCAACAGCAATCTGACTCCTGAGATGAAAGAATG-AAAAACTTATTAAGG
GGAATGGTAATCAGTTAGTAAAAGATA
>chr5A_84
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---CCTGCAACGGCAGAGTTCTGGCTTACCAAGAAGGCAACGACGAGAGTGGCAGCACATGAGAAGTCCAGTGGCTCTGG
GCCTGGTTGCTCGTCCACCGTCTACATGTAGCACGTAC---GTACCAATACCAAAGCAAACAAAAGACATGTTCTCCTGG
TCCTGCAGACTGTTGTTGAAGTGGAGATACGCCGTGAGCAAGCTAGGCATTTGGCAGGCATGGATGACAGGCAGACACAG
CGGCGACAGGA-GCCTTTTGAGCTATGCCAGCCTCATGCTTAACCTTCTAATCTAATGCTAATAAATCATGGGCTAGCT-
AACCCAGGCAGGCAGGCAGGTGCATCTAATCTCCCC--AGGCCGGCCTCTCTGCCAGGCCCCCACCATGAGGGCGAGGCG
CTACGGCCACATGGACTACAGATGGAAATACCTGTAACACTGCGTTGCAAGCAAAATGCCTCCTCCTCCTGCTCCTCCTC
CTCCCTTGGCTTTGGCTTTGGTGACAAGAGAGGAGAGGGTACGCAAATGGTTGGGGAAAGTTATGGGTGACAGTTGGAGC
TCGCGAGGATAGGCCACCCTTTCCCATTTAAACACACTGCCATCCTCTCTGCGGTTCCTTCACACACCTCCACCCCCAGA
CACACCATAGCCATACACATGGTCCGGCCCTGAAGAATTCTTGCCCCCCTCTCATGCAATCCAGCCC-------------
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-----------------------CTCCCTCTGAATTCTCTGTCCTCTGAAGAAGGCTGAGTGCAGGAGGATCCGGTGCTC
TTCTCGGGTTATGGGTGCTCAAGAAGCATAGACAAGAACAACTCCATCTTCAGTGCTGCATTGTTGAGGAGATTCAGATT
TCGGAAGAAGCATAAGAGTTGGTGTTCGCAGAATTCTCCATCGACCTCGTTCTGCCTCTCTTCT----TTGGCCTTTCTT
TTCTCTCTTTTGGTCTCCCGCTCCCGTGGCCTGTCATGGAATCCTCCCAGATCACCGGGGATGGCGGCGAAGAGTGCAAC
AGCAATGAATCTGGGTGGACGATATACCTGACCTCCCCCACGAGCAGCTATGAAGCAAAAGAGAATGGCAGTGAAGGGAG
CAATGTTGAAGATGGCAGTGGCTACATCACTGAGAGGAGGAAAGGGAAGGAAGAGAACAACGCGGATGATGATGGAGATT
ATGATTCCCTGGCGTCTGATGCTTCCACAGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAAGATCGTCAG
ACAAATGACGGTTGCAGCAATGAACATGGCAAGGATGAACAGGCTGAGACGCTTACCAAGTTCTCGACCGGCAGCAACAA
AAAGGCGGGCAAGGTGAAGAAAGGGGACGACAAAAGCAGCAAAAGAGGCCACAATAGAAGACGTAGCTCATCAAGAACAA
GCTTCTTTTGGTAAAGGATGTAAAAACCTTGCTCGTCTATTTCTTTCTTAT---CAAGCTAGAATCGATGTCAGAGGCAT
GAGGAATTGAAGGCCTTGTCATGGTCCCTGCTATTGCCTTCTATTGTTTTGTCCATTTGTTAGCCACCTCATAGGTTAGT
TCTTCCTATGCAAATCTGTCACCCTTGAATTATTATTCATTGCCCTATTCTTAATATTGACATTCAAGCACTACATGCTC
TCCTATGTTTCTATAGACATTAATGATCACTTTGTCCAGATACACCTCCCCAATGAGGTGTTTGAGGCCACCAACCCAAA
AAGATAATTCGGTTCAATGGCCTTCTGCTTTCCCAATATTTTTATAGGTCAGAATATCTGCATGTGTTAAAATTTAC-TC
AGAAAAAGCGTATATAGAAATCTGCTTTATCATGTGTCTGTCAATAATCTTTTCACGTTTGGTGAGCAATCTAATATAGT
ACTCCCTCTGTCGCATAATATAAGAGTGTTTTTGACACTAGTGTAGTGTCAAAATTGCTCTTAT----------------
--------------------------ATTATGGGACGGAGGGA---GTATTGTCTATCAGTTAAGTTATATGAACTGCTA
CAGAGCAAAAATTAATAGGATTTACACAAATCTCCTTAACACATCTTTCTTACCCTTGAGTAAAGCAAATCCTATGATAT
ATAGTAGATCAATCTTACTACAACTGATGCGGCATTTGCACATGAAACCTAGGAATATCCGGCCCTTCCATATAAGAAGC
ATTAGACAATGTACAGTACATTTATAAACAATAAGATGTAGAAGATTTCAACAAGACGAACCAACAATGTACTGTACAAA
CAAGTGTAGTTTACAGAACAGCTTAAGTAGACATGACAAGTAATACAAGGTACAAGAGCCTCCAGCTATCACCTGATATG
TGCAATTCCTACTCTTTGCGTCTACAGTAGTTCCCTCCCAACAGTACTAGCAGCAGTAGCATATGGAGCACCTTCTGCTG
GGCAAATGATGCAAAAGAAGGTATTACCTCCCAACAGCAATCTCACTCCTGAGATAAAAGAATG-AAAAACTTATTAAGG
GGAATGGTAATCAGTTAGTAAAAGATA
>chr5B_105
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------------------------CTTACCAAGATGGCAACGATGAGAGTGGCAGCACATGACAAATCCAGTGGCTCTGG
GCCTAATTGCTCGTCCACCGTCTACATGTAGCACGTACTACGTACTAATACCAAAGCAAACAAAAGACATGTTCTCCTGG
TCCTGCAGACTGTTGTTGAAGTGGAGATACGCCGTGAGCAAGCTAGGCATTTGGCAGGCATGGATGACAGGCAGACACAG
CGGCGACAGGAGGCCTTTTGAGCTATGCCAGCCTCACGCTTAACCTTGTAATCTAATGCTAATAAATCATGGGCTAACCA
AACC----CAGGCAGGCAGGTGCATCTAATCTCCCCCCAGGC----CTCCCTGCCAGGCCCCCACCATGAGGGCGAGGCG
CTACGGCCACATGGACTACAGATGGAAATACCTGTAACACTGCGTTGCAAGCAAAATGGTT--------TGCTCCTCCCT
CC---------TTGGCTTTGGTGACAAGAGAAGAGAGGGTACGCAAATGGTTGGGGAAAGTTATGGGTGACAGTTGGAGC
TTGCGAGGATAGGCCACCCTTTCCCATTTAAACACACTGTCATCCTTT----------------------CACCCCCAAA
CACACCATAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTCCCTCTGAATTCTTG----------------------------------------
----CGGGTTATGGGTGCTCAATAGGCGTAGGCAAGAACAGTGCCATCTTCAGTGCTGCATTGTTGAGGATATTCAGATT
TCGGGAGAAGCATAAGAGTAGGTGCTCGCAGAATTCTCCCTCGACCTTGTTCTGCCTTGTTTCCGTTCTTGGCCATTCTT
GTCTCTCTTTTGGTCTTCCACTCCGAACGCCTGTCATGGAATCCTCCATGATCACCGGGGATGGCGGCGAAGAGTGCAAC
AGTAATGAATCCGGGTGGACGATATACCTGACCTCCCCCACGAGCAGCTATGAAGCAAAAGACAATGGCAGTGAAGGGAG
CAATGTTGAAGATGGCAGTGGCTACATCACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCGGATGACGATGGAGATT
ACGATTCCCTGGCGTCTGATGCTTCCACAGGGCCATCTCAAGTGAAGGTGCTTGAAGGCAAAGAAGAGAAAGATCGTCAG
ACAAATGACGGTTGCAGCAATGAACATGGCAAGGATGAAGAAGCTGAGACACTTACCAAGTTCCCGACAGGCAGCAACAA
AAAGGCAGGCAAGGTGAAGAAAGGGGACGAAAAAAGCAGCAAAAGAGGCCACAATAGAAGACGTAGCTCATCAAGAACAA
GCTTCTTTTGGTAACTGATGTAAAAACCTTGCTCATCTATTCCTTTCTTAT---CAAGCTAGAATCCATGTCAGAGGCAC
GAGGAATTGAAGGCCTTGTCATGGTCCCTGCTATTGCCTTCTATTGTTTTGTCCATTTGTTAGCCACCCCATAGGTTAGT
TCTTCCTATGCAAATCTGTCACCATTTCATTATTATTCATTGCCCTATTCTTAATATCGACATTCAAGCACTGCATGCCC
TCCTATGTTTCTATAGACATTAATGATCACTTTGTCCAGATACACCTCCCCAATGAGGTG-TTGAGGCCACCAACCCAAA
AAGATAATTCGGTTAAATGGCCTTCTGCTTTCCCCGAAAATTTATAGGTCAGAATATCTGCATGTGTTAAAAATTTATTC
AGAAAAGGCGTATATAGAAATCTGCTTTATCGTGTGTCTGTCAATAAGCTTTTCACGTTTGGTGAGCAATCTAATATA--
-CTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAGATACGGATGTATCTAACACTAAAACGTAACTAGATACATC
CGTATTTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTAGTATTGTCTACCAGTTCAGTTATATGAACTGCCA
TAGAGCAAAAAATAATAGGATTTACACAATTCTCCTTAACACATTTTTCTTACCCTTGAGTAAAGCAAATCCTATCATAT
ATAGTAGATCAATCTTACTACAACTGATGCGGCATTTGCACATGAAACCTAGGAATATCCGGCCCTTCCATATAAGAAGC
ATTAGACAATGTACAGTAGATTTATAAACAATAAGATGCAGAATATTTCAAGAAGACGAATCAACGATTTACTGTACAAA
CAAGTGTTGTTTACAGGACAGCATAAGTA-----GACAAGTAGTACAAGGTACAAGAGCCTCCA-CTATCACCTGATATG
TGCAATTCCTACTCTTTGCGTCTACAGTAGTTCCCTAAAAGCAGCAGTAGCATCAG------ATGGAGCACCTTCTGCTG
GGCAAATGATGCAAAAGAAGGAATTACCTCCCAACAACAACCTCATTCCTGAGATAAAAGAATGAAAAAACATAGTAAGG
GGAATGGTAATCAGTTA----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------S----------S----S--S---------------S---SS----------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-S--------S---------------------------------------------------------------------
-----------S------------------------------------S-------------------------------
----------------------------------------------------S---------------------------
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-------------------S--S--S-----------------------SSSS---------------------------
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---------------------------S------------S----S------S------S---S--------S-------
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----------------------------------------------------------------S---------------
-------------------------------------------------S------------------------------
--------------------S--------------------S--------------------------------------
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----------------------------------------------------------------------S---------
------S-S----S--------------S---------------------------------------------------
------------------------------S----------------------S--------------------------
---------------------------------------------------SSS------------S-------------
-------------------S----------------------SS------------------------------------
-------S---------------------------------S--------S-----------------------------
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----------------------------------------S---------------------------------------
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---------------------------------------------------------------------------S---S
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------------------------------S-------------------------------------------------
------------------------------------------------S------------------------------S
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----S--------------------------------------------------------------------S------
------------S--------------S---------------S-----------S------------------------
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>forward_173
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-------------------------------------------------------------------------GCTCTGG
GCCTAATTGCTCA-------------------------------------------------------------------
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>reverse_1860
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-------------------GATGGTCCCTGCTATTGCCT-----------------------------------------
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