>input_sequence_79661
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATGGAATCCTCCATGATCACCGGGGATGG
CGGCGAAGAGTGCAACAGTAATGAATCCGGGTGGACGATATACCTGACCTCCCCCACGAGCAGCTATGAAGCAAAAGACA
ATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATCACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCG
GATGACGATGGAGATTACGATTCCCTGGCGTCTGATGCTTCCACAGGGCCATCTCAAGTGAAGGTGCTTGAAGGCAAAGA
AGAGAAAGATCGTCAGACAAATGACGGTTGCAGCAATGAACATGGCAAGGATGAAGAAGCTGAGACACTTACCAAGTTCC
CGACAGGCAGCAACAAAAAGGCAGGCAAGGTGAAGAAAGGGGACGAAAAAAGCAGCAAAAGAGGCCACAATAGAAGACGT
AGCTCATCAAGAACAAGCTTCTTTTGGTAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr5B_1_TraesCS5B01G248900
AGACATGTTCTCCTGGTCCTGCAGACTGTTGTTGAAGTGGAGATACGCCGTGAGCAAGCTAGGCATTTGGCAGGCATGGA
TGACAGGCAGACACAGCGGCGACAGGAGGCCTTTTGAGCTATGCCAGCCTCACGCTTAACCTTGTAATCTAATGCTAATA
AATCATGGGCTAACCAAACCCAGG----CAGGCAGGTGCATCTAATCTCCCCCCAGGC----CTCCCTGCCAGGCCCCCA
CCATGAGGGCGAGGCGCTACGGCCACATGGACTACAGATGGAAATACCTGTAACACTGCGTTGCAAGCAAAATGGTTTGC
TCCTCCCTCC-----------------TTGGCTTTGGTGACAAGAGAAGAGAGGGTACGCAAATGGTTGGGGAAAGTTAT
GGGTGACAGTTGGAGCTTGCGAGGATAGGCCACCCTTTCCCATTTAAACACACTGTCATCCTTT----------------
------CACCCCCAAACACACCATAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTCTGAATTCTTG------------------------
--------------------CGGGTTATGGGTGCTCAATAGGCGTAGGCAAGAACAGTGCCATCTTCAGTGCTGCATTGT
TGAGGATATTCAGATTTCGGGAGAAGCATAAGAGTAGGTGCTCGCAGAATTCTCCCTCGACCTTGTTCTGCCTTGTTTCC
GTTCTTGGCCATTCTTGTCTCTCTTTTGGTCTTCCACTCCGAACGCCTGTCATGGAATCCTCCATGATCACCGGGGATGG
CGGCGAAGAGTGCAACAGTAATGAATCCGGGTGGACGATATACCTGACCTCCCCCACGAGCAGCTATGAAGCAAAAGACA
ATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATCACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCG
GATGACGATGGAGATTACGATTCCCTGGCGTCTGATGCTTCCACAGGGCCATCTCAAGTGAAGGTGCTTGAAGGCAAAGA
AGAGAAAGATCGTCAGACAAATGACGGTTGCAGCAATGAACATGGCAAGGATGAAGAAGCTGAGACACTTACCAAGTTCC
CGACAGGCAGCAACAAAAAGGCAGGCAAGGTGAAGAAAGGGGACGAAAAAAGCAGCAAAAGAGGCCACAATAGAAGACGT
AGCTCATCAAGAACAAGCTTCTTTTGGTAACTGATGTAAAAACCTTGCTCATCTATTCCTTTC---TTATCAAGCTAGAA
TCCATGTCAGAGGCACGAGGAATTGAAGGCCTTGTCATGGTCCCTGCTATTGCCTTCTATTGTTTTGTCCATTTGTTAGC
CACCCCATAGGTTAGTTCTTCCTATGCAAATCTGTCACCATTTCATTATTATTCATTGCCCTATTCTTAATATCGACATT
CAAGCACTGCATGCCCTCCTATGTTTCTATAGACATTAATGATCACTTTGTCCAGATACACCTCCCCAATGAGGTG-TTG
AGGCCACCAACCCAAAAAGATAATTCGGTTAAATGGCCTTCTGCTTTCCCCGAAAATTTATAGGTCAGAATATCTGCATG
TGTTAAAAATTTATTCAGAAAAGGCGTATATAGAAATCTGCTTTATCGTGTGTCTGTCAATAAGCTTTTCACGTTTGGTG
AGCAATCTAATAT-------------------------------------------------------------------
----------------ACTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAGATACGGATGTATCTAACACTAAAA
CGTAACTAGATACATCCGTATTTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTAGTATTGTCTACCAGTTCA
GTTATATGAACTGCCATAGAGCAAAAAATAATAGGATTTACACAATTCTCCTTAACACATTTTTCTTACCCTTGAGTAAA
GCAAATCCTATCATATATAGTAGATCAATCTTACTACAACTGATGCGGCATTTGCACATGAAACCTAGGAATATCCGGCC
CTTCCATATAAGAAGCATTAGACAATGTACAGTAGATTTATAAACAATAAGATGCAGAATATTTCAAGAAGACGAATCAA
CGATTTACTGTACAAACAAGTGTTGTTTACAGGACAGCATAAGTA-----GACAAGTAGTACAAGGTACAAGAGCCTCCA
-CTATCACCTGATATGTGCAATTCCTACTCTTTGCGTCTACAGTAGTTCCCTAAAAGC------AGCAGTAGCATCAGAT
GGAGCACCT
>chr5D_1
AGACATGTTCTCCTGGTCCTGCAGACTGTTGTTGAAGTGGAGATACGCCGTGAGCAAGCTAGGCATTTGGCATGCATGGA
TGACAGGCAGACACAGCAGCGACAGGGGGCCTTTTGAGCTATGCCAGCCTCATGCTTAACCTTCTAATCTAATGCTAATA
AATCATGGGCTAACCAAACCCAGGCAGCCAGGCAGGTGCATCTAATCTCCCC--AGGC----CTATCTGCCAGGCCCCCA
CCATGAGGGCGAGGCGCTACGGCCACATGGACTACAGATGGAAATACCTGTAACACTGCGTTGCAAGCGAAATGGTTTGC
TCCTCCCTCC-----------------TTGGCTTTGGTGACAAGAGAAGAGAGGGTACGCAAATGGTTGGGGAAAGTTAT
GGGTGACAGTTGGAGCTTGCGAGGATAGGCCACCCTTTCCCATTTAAACACACTGCCATCCTTTCTGCGGTTCCTTCACA
CACCTCCACCCCCAAACACACCATAGCCATACACACGGCCCAGCCCTGAAGAATTCTTGCCCCCCCTCAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CTCCTTCTGAATTCTTGATCCTTTGAAGAGGGCTGATTGCT
GGAGGATCTGGTGCTCTTCTCGGGTTATGGGTGCTCAAGAGGCATAGGCAAGAACAGTGCCATCTTCAGTGCTGCATTGT
TGAGGATATTCAGATTTCGGGAGAAGCATAAGAGTAGGTGCTCGCAGAATTCTCCCTCGACCTTGTTCTGCCTTGTTTCC
ATTCTTGGCCATTCTTGTCTCTCTTTTGGTCTTCCACTCCGATCGCCTGTCATGGAATCCTCCCAAATCACCGGGGATGG
CGGCGAAGAGTGCAACAGCAATGAATCCGGGTGGACAATATACCTGACCTCCCCCACAAGCAGCTATGAAGCAAAAGAGA
ATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATCACCGAGAGGAGGAAAGGGAAAGAAGAGAACAACGCG
GATGATGATGGAGATTATGATTCCCTGGCGTCTGATGCTTCCACAGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGA
AGAGAAGGATCGTCAGACAAATCATGGTTCCAGCAATGAACATGTCAAGGATGAACAAGCTGAGACACTTACCAAGTTCT
CGACAGGCAGCAACAAAAAGGCGGGCAAGGTGAAGAAAGGGGACGAGAAAAGCAGCAAAAGAGGCCACAGTAGAAGACGT
AGCTCATCAAGAACAAGCTTCTTTTGGTAACTGATGTAAAAACCTTGCTCATCTATTTCTTTCTTATTATCAAGCTAGAA
TCAATGTCAGAGGCATGAGGAATTGAAGGCCTTGTGATGGTCCCTGCTATTGCCTTCTGCTGTTTTGTCCATTTGTTAGC
CACCTCATAGGTTAGTTCTTCCTGTGCAAATCTGTCACCCTTTCATTATTATTCATTACCCTATTCGTAATATCGACATT
CAAGCACTGCATGCTCTCCTATGTTTCTATAGACATTAATGATCACTTTGTCCAGATACACCTCCCCAATGAGGTG-TTG
AGGCCACCAACCCAAAAAGATAATTCGGTTCAATGGCCTTCTGCTTTCCCAAAAAAATTATAGGTCAGAATATCTGCATG
TGTTAAAATTTAC-TCAGAAAAGGCGTATATAGAAATCTGCTTTATCGTGTGTCTGTCAATAATCTTTTCACGTTTGGTG
AGCAATCTAATAT-------------------------------------------------------------------
----------------A---------------------------------------------------------------
--------------------------------------------------------------GTATTGTCTATCAGTTAA
GTTATATGAACAGCCGTAGAGCAAAAATTAATAGGATTTACACAAATCTCCTTAACACATCTTTCTTACCCTTGAGTAAA
GCAAATCCTATCATATATAGTAGATCAATCTTACTACAACTGATGCAGCATTTGCACATGAAACCTAGGAATATCCGGCC
CTTCCAT--AAGAAGCATTAGACAATGTACAGTACATTTATAAACAATAAGATGTAGAAGATTTAAACAAGACGAACCAA
CAATGTACTGTACAAGCAAGTGTAGTTTACAGAACAGCTTAAGTAGACATGACAAGTAATACAAGGTACAAGAGCCTCCA
GCTATCACCTGATATGTGCAGTTCCTACTCTTTGCGTCTACAGTAGTTCCCTCCCAACAGTACTAGCAGCAGTAGCATAT
GGAGCACCT
>chr5A_1
AGACATGTTCTCCTGGTCCTGCAGACTGTTGTTGAAGTGGAGATACGCCGTGAGCAAGCTAGGCATTTGGCAGGCATGGA
TGACAGGCAGACACAGCGGCGACAGGA-GCCTTTTGAGCTATGCCAGCCTCATGCTTAACCTTCTAATCTAATGCTAATA
AATCATGGGCTAGCT-AACCCAGGCAGGCAGGCAGGTGCATCTAATCTCCCC--AGGCCGGCCTCTCTGCCAGGCCCCCA
CCATGAGGGCGAGGCGCTACGGCCACATGGACTACAGATGGAAATACCTGTAACACTGCGTTGCAAGCAAAATGCCTCCT
CCTCCTGCTCCTCCTCCTCCCTTGGCTTTGGCTTTGGTGACAAGAGAGGAGAGGGTACGCAAATGGTTGGGGAAAGTTAT
GGGTGACAGTTGGAGCTCGCGAGGATAGGCCACCCTTTCCCATTTAAACACACTGCCATCCTCTCTGCGGTTCCTTCACA
CACCTCCACCCCCAGACACACCATAGCCATACACATGGTCCGGCCCTGAAGAATTCTTGCCCCCCTCTCATGCAATCCAG
CCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CTCCCTCTGAATTCTCTGTCCTCTGAAGAAGGCTGAGTGCA
GGAGGATCCGGTGCTCTTCTCGGGTTATGGGTGCTCAAGAAGCATAGACAAGAACAACTCCATCTTCAGTGCTGCATTGT
TGAGGAGATTCAGATTTCGGAAGAAGCATAAGAGTTGGTGTTCGCAGAATTCTCCATCGACCTCGTTCTGCCTCTCTTCT
----TTGGCCTTTCTTTTCTCTCTTTTGGTCTCCCGCTCCCGTGGCCTGTCATGGAATCCTCCCAGATCACCGGGGATGG
CGGCGAAGAGTGCAACAGCAATGAATCTGGGTGGACGATATACCTGACCTCCCCCACGAGCAGCTATGAAGCAAAAGAGA
ATGGCAGTGAAGGGAGCAATGTTGAAGATGGCAGTGGCTACATCACTGAGAGGAGGAAAGGGAAGGAAGAGAACAACGCG
GATGATGATGGAGATTATGATTCCCTGGCGTCTGATGCTTCCACAGGGACATCTCAAGTGAAGGTGCTTGAAGGCAAAGA
AGAGAAAGATCGTCAGACAAATGACGGTTGCAGCAATGAACATGGCAAGGATGAACAGGCTGAGACGCTTACCAAGTTCT
CGACCGGCAGCAACAAAAAGGCGGGCAAGGTGAAGAAAGGGGACGACAAAAGCAGCAAAAGAGGCCACAATAGAAGACGT
AGCTCATCAAGAACAAGCTTCTTTTGGTAAAGGATGTAAAAACCTTGCTCGTCTATTTCTTTCTTAT---CAAGCTAGAA
TCGATGTCAGAGGCATGAGGAATTGAAGGCCTTGTCATGGTCCCTGCTATTGCCTTCTATTGTTTTGTCCATTTGTTAGC
CACCTCATAGGTTAGTTCTTCCTATGCAAATCTGTCACCCTTGAATTATTATTCATTGCCCTATTCTTAATATTGACATT
CAAGCACTACATGCTCTCCTATGTTTCTATAGACATTAATGATCACTTTGTCCAGATACACCTCCCCAATGAGGTGTTTG
AGGCCACCAACCCAAAAAGATAATTCGGTTCAATGGCCTTCTGCTTTCCCAATATTTTTATAGGTCAGAATATCTGCATG
TGTTAAAATTTAC-TCAGAAAAAGCGTATATAGAAATCTGCTTTATCATGTGTCTGTCAATAATCTTTTCACGTTTGGTG
AGCAATCTAATATAGTACTCCCTCTGTCGCATAATATAAGAGTGTTTTTGACACTAGTGTAGTGTCAAAATTGCTCTTAT
ATTATGGGACGGAGGGA---------------------------------------------------------------
--------------------------------------------------------------GTATTGTCTATCAGTTAA
GTTATATGAACTGCTACAGAGCAAAAATTAATAGGATTTACACAAATCTCCTTAACACATCTTTCTTACCCTTGAGTAAA
GCAAATCCTATGATATATAGTAGATCAATCTTACTACAACTGATGCGGCATTTGCACATGAAACCTAGGAATATCCGGCC
CTTCCATATAAGAAGCATTAGACAATGTACAGTACATTTATAAACAATAAGATGTAGAAGATTTCAACAAGACGAACCAA
CAATGTACTGTACAAACAAGTGTAGTTTACAGAACAGCTTAAGTAGACATGACAAGTAATACAAGGTACAAGAGCCTCCA
GCTATCACCTGATATGTGCAATTCCTACTCTTTGCGTCTACAGTAGTTCCCTCCCAACAGTACTAGCAGCAGTAGCATAT
GGAGCACCT
>SNPs
--------------------------------------------------------------------------------
----------------------------------------------------S----------S----------------
----------------------------------------------------SS-----------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
--------------------------------------S----S------------------------------------
--------------------------------------------------------------------------------
S-----------------------------------------S--------------------SS---------------
------------------S-----------------------------------------------------------S-
--------------------------------------------------------------------------------
-----S-----------S------------------------------S-------------------------------
-------------------------------------------------------S-----------------------S
----------------------S-----------------------S---------------------------------
---------------------------------------------------------S----------------------
--S------------S----------------------------------------------------------------
----S----------------------------------S----------------------------------------
--------------S-----------------------------------------------------------------
------------------------------S-------------------SS----------------------------
--------S--SSS-------------------------------------------------S----------------
--------------------------------------------------------------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-----S-
---------------------------S-----------------S--------------S-------------------
--------------------------------------------------------------------------------
----------------------------------S-------------------S----S-------S--------S---
-S--S------------------S--------S-----S-------------------S---------------------
----------------------------------------------------SSS-S------------S--S-S--S--
---------
>forward_919
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GCGGGTTATGGGTGCTCAAT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>reverse_2205
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTTGGGACGGAGGGAGTAGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
