>input_sequence_79649
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-----------------------------------------------------------------------------ATG
GCGCCCAAGGCCGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCCGCGGCGGAGAAGGCCGAGAAGACTCC
CGCCGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGGAAGT------CGGCCGC---CAAGGAGGGCGGCGACA
AGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGC
CGCCAAGCTGGCGCGGTACAACAAGAAGCCAACCATCACGTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCG
GCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCTGTCACCAAGTTCACCTCCTCTTAG---------------
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>chr4D_1_TraesCS4D01G054200
GCATGCATTGATATCTTTAGCCATTTCAGTTTTGGGATGCCGAGCCCTCCGGCCCATCTGGGTGTACATACCCCGTCCCA
GGCCGCCGGGCATTGCCCTCCACTTGCCTAATCTTTCGCACACCATAAGAAACCACAACAGATTTTAACCATTGCCTTGA
TCATTTTCATGGGTATATCCAGCACCATCATTGCATGGAGGGGCATGGCGCTAAGAACTGATTGGACTAGGATCAACCTT
CCGCTCTTAGTCATGTTGACGGCTTTCCATCTTGGTAAGCAAGCTGCTAAGTATTCCACCATTCCGAATAGTTGGGCCGC
CGTTTTGCTTCCGGAGTGTAAGAGGAATGCCCAAATACTTGCATGTGAGTCACACGCTGCATGTCTTCGGTTGTACATCG
AATTGGCAAGGCTGCACTCTTGAGTAGGTTCACCCTGAGACCGGAACCCTCTCCGAATAGATGAAGGAGGGATGCGCACG
TTTGCAGGACTTTTGAG--GGGCTGTCCAGAGTCGCGACCAGGCATGTTCACGGATGTTTAGGGGCTGGATTTCCCAGTC
CGGCTATATA----TGCTCTAATGATTAATAAATCTCTTCTTGCAAAAATAA----------------------------
----------------------------------------------------------TAATTAATAAATCTCATTTTTG
ATTAAAAAAAACTCACT---------------------------------------------------------------
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------------------------------------GTGCTATTGCTCAATACAAATCGGGCGAGCGCCCGGAATTTCTC
CATGAAATTCGCGCCCGCGGGTTCCCTCC-----ATTCTGCCAGAGCGCGCGCGGAAAGCACA----------CCCACAA
TTTAGCCAGGCCA-GCGATCCGCGTCGAAACGCATCCAGCCCGTCCATC-CCAAAAGCGGCGAACGGCTGGTATCGCTTG
ACATCATCGATCCGCGGCA-CCACCCCTCCACCAATCAGCTCTCGCCTCTCC-CATCTATAAAATTCTCCG-CCCC-CTC
CCCGTCTTCCCACATC---------TCATCTGC-----AATTACCCACCATCTCCTCCAT---------ATCCTCCGGCG
AAACCCAGCCCCAG-------------------TCCACCCCACCGT-----------------------CCGCATCCATG
GCGCCCAAGGCCGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCCGCGGCGGAGAAGGCCGAGAAGACTCC
CGCCGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGGAAGT------CGGCCGC---CAAGGAGGGCGGCGACA
AGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGC
CGCCAAGCTGGCGCGGTACAACAAGAAGCCAACCATCACGTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCG
GCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCTGTCACCAAGTTCACCTCCTCTTAGGCTGTTCGTCTTCCT
GTGTCTCGTAGTTAGCTGTTCGGGTGTGTTTGTGGCCGTGTTATCCTGTAAGAATCGCACCGCGATGTTTCTGTATCTCG
AGAAATGGTAATGGTGCCTGCCTCAATGTTCAGTACGTACATGCTAGTCTTATTTTGTTCTGGTCTTGAATTCTTGATCT
CGAGTCAAGGTGCTGATCCTCTCCTTTCTGAG---AATCATGTGCTCTTATCGGCGGTCTTAGACTTTGCTTTTCCAAAT
TCTGTGTGAGATTGTAC--------TGTCTGTTAAATTTGCTGCCCCATGACACGATCTTCCAGTTCTGGAGCCATGTTT
CGTGCATCAAAACGAAAAAATCAATTGGCCGGAAGTTCAGTCGCTCCTAAAAATCAATCGAGTTCATGTCAACCGGTGTC
GTTCCAGTGGGAGCGAAAAGTTGTACCACATGATTCGTTTTGCAATAAT-----------------GCCAACAGCAGTTC
CGAATTTCTGCTCGACGGATCTGATAGTTCGTTC------CAAGTGGTTTATGACTTCTGTTTCATTACTGTTTGTTTGT
TGTCCCAGTCTTCTGTTTCATGGCTGATATGCTTCCTTTCCTAATCGCACTGCACATCCATTTTTGGTACTCGAAATGCG
ACAGTATTCATGCAATTTCAGTTCCCGTTGCAGTCCAGCAGGCATTGCTTTGTAGTTGGACACTGGTAATTCAGAGAGTA
CGCTGTATGCTCTCCAAGATCAGCCGCACAACCGCCTCACCGTCGTGGTAGCAGTAACATCTTACTAGCAGGACGGCAGC
CAAACGTAGCTGGTTGATCGGTGGCAGGAACGCCGTG------------------------------------------C
GGCGAGAGCACGGCGCGCCCTGGAGTCGTCAAGTGTATGGCAAACAGAAACTAGTCTATGAAAACATGC-------AATA
TTCTGCAGTTCAAACTTCCAATGCAATCGATCACATCAATTACTGACAGTAATATCAGATGCGATCTTCAGTGTGTTATG
TTGCCTGGCTTCTGCTGCTGTTCAATTC
>chr4A_480
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-------------------------------------------------------------------------------G
TTCGCAGGACTTTTGA---GGGCTGTCCGGGGTCGCCACGA-GCATGTTCACGGATGTTTAGGGGCTGGATTTCCCAGTC
GGGCTATACA----TGCTCTAATGATTAATAAATCCCTTTTTGTAAAAACAATAGTACTCCCTCTGTCCTAAAATATAAG
AATGATTTTTATACTATGCTAGTGTAAAAAACGTTATTATATTTTAGGACGGAGGGAGTAATTAATAAATCTCATTTTTG
ATTAAAAAA--CTCACT---------------------------------------------------------------
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------------------------------------GTACTATTGCTCAATACAAACCGGGCGAACACCCAAAATTTCTG
TGTAAAATTCGCGCCCGCGGGTCTTCCCTCCAAAATTCTGCCAGAGCGCGCGCGGAAGCACACCTGCCGCCCGCCCACAA
TTTAGCCAGGTCA-GCGATCCGCGTCGAAACGCATCCAGCCCGTCCATC-CCAACAGCGGCGAACGGCTGATATCGATTG
ACGTCATCGATCCGCGGCA-CCACCCCTCCGCCAATCAGCTCTCGCCTCTCC-CATCTATAAAATTCCCCGCCCCC-CTC
CCCGTCTTCCCACATC---------TCATCTGC-----AATCCCC-----------ACAACTCCCACACATCCTCCGGCG
AAACCAAACCCCAG-------------------CCCGCCGCACCGT-----------------------CAGCACCCATG
GCGCCCAAGGCCGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCCGCGGCGGAGAAGGCGGAGAAGACGCC
CGCCGGGAAGAAGCCCAAGGCGGAGAAGCGGCTGCCGGCGGGGAAGT------CCGCCGC---CAAGGAGGGCGGCGACA
AGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGC
CGCCAAGCTGGCGCGGTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCG
GCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCGTAGAGTGCTCCTGCTCCT
GTGTCTCGTAGTTAGCTGTCCGGGTGTGTTTGTGGCCGTGTAATCGTGTAAGAATCGCACCGTGATGTTTCTGGATCTCG
AGAAATAGTAACGGTGCCTGCCTCAATGTTCGGTAC-TACATGTTCGTCTTAATTTCTTCTCGTCTTGTGATCTTGAT--
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>chr4B_480
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-------------------------------------------------------------------------------G
TTTGCAAGACCTTTGAGGGGGGCTGTCCGGGGTCGCGACCAGGCATGTTCACGGATGTTTAGGGGCTGGATTTCCGAGTC
CGTCTATATAAATGTGCTCCAATGATTAATAAATCTCTTCTCGCAAAAATAAC---------------------------
-----------------------------------------------------------AATTAATAAGTCTCGATTCTG
ATCTAAAAAAATTCACTGTACTCCCTCCGTTTCTTTTTAGTCTGCATATAAGATTTGATCAAAGTCAAACTTTGTAAAGT
TTGACCAACTTTATTGAAAAAAATATTAACATCTACAATACTAAACCTATAGGATATGAAAATTAATTTCATAATGCATC
TAACAATATATATTTCATATTATGAATCTTGATATATTTTTTTATAAACTTAGTCAAAGTTAATAAAGTTTGACTTTGAC
CAAGTCTGATATGCAGACTAAAAAGAAACGGAGCGAGTACTATTGTTCAATACAAATCGGGCGAGCACCCAGAAATTCTC
CGTAAAATTCGCGCCCGCAGGTCTTCCTTCCAA---TCTGCCAGAGCGCGCGCGGAAGCACACCTGCCGCCCGCCCACAA
CTTAGCCAGGCCA-GCGATCCGCGTCGAAACGCATCCAGCCCGTCCATC-TCAAAAGCGGCGAACGGCTGGTATCGCTTG
ACGTCATCGATCCGGGGCA-CCACCCCTCCGCCAATCAGCTCTCACCTCTCCCCATCTATAAAAATCTCCG-CCCCTCTC
CTCTTCTCCCCACATC---------TCATCTGC-----AATCCCCTCTCCTCCTTCA------------ATCCTCCAGCG
AAACCCCACCCCGC-------------------CCCACCCCACCGT-----------------------CAGCATCCATG
GCGCCCAAGGCCGAGAAGAAGCCGGCGGCGAAGAAGCCAGTGGAGGAGGAGCCCGCGGCGGAGAAGGCCGAGAAGACCCC
GGCCGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGTCGTCGGCGGCGGC---CAAGGAGGGCGGCAAGG
CG------AAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGC
CGCTAAGCTGGCGAGGTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCG
GCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCTGTCACCAAGTTCACCTCCTCCTGA---------------
--GTCTCGTAGTTAGCTGTTTGGGTGTGTTTGTGGCCGTGTTATCGTGTAAGAATCGCATCGCTATGTTTCTGGATCTCG
AGAAATAGTAACGGTGCCTGCCTCAATGTTCAGT----ACATGCTCGTGTTATTTTGTTCTGGTCTTCAATTCTTCATCT
CTAATCAACGTGCTGGTCATCTCCATCTTTTCTGAAATCATGTGCTCTTATCAGCGTTTGGAGACTCTGTTTATTTTTAA
AAAATTTATGCGCGTGGTTGTACTTTGTCCGTGAAATTTGCTGCAACATGACACGATCTTGCAGTTTTGGAGCCGTATTT
CGTGCATCAAAATGGAAGAACCAATTGGCAGAAAGTTCAGTCGCTCCTAAAA-TCAATCGAGTTACTGAATT--------
-------TGCGACCGGAAAGTTGTTCCACATGATTCATTTTGGCTATAATGTCAAGCCGTGTCGGCGCCAGCAGCAGTTT
CTAATTTCTGCTCGACGGATCTGATAGAAATGGCTCGTTTCAAGTAGTATTTGATCTCTGTTTCATTACTGTTTGTTTGT
ATTGCC--------------------------------------------------------------------------
-------------------------------------------------TTGTAGTTGGACACTGGTAATTCAGAGAGTG
CGCTGTATGCTTTCTGATTTTTTCTCTAGTATTTATCCCCCCAGCTTTCAGAATGGACAGACTCGTCCGGGATCTGAATG
AAATGTTTAGGACTTGCGGCACTGGGTGTTTATCTCAGGTCAAGCGTCGGCAGCAACAGAGAGGTTACCAACGGCAGGAC
GGCGAGACCACGCCGCGCCCTGGAATCAT-AAGTGTATGGCAAACGCAAAATAATCCATGAAACTATGAACTATGAAATC
TTCTGAAGTTCAAACTTCCAATGCAATCAATCACATGAATTACTGACAGTAACAACGTATGCGATCTTCATTGTGTTATG
TTGCCTGGCTTCTGCTGCTGTTTAATTC
>chr1B_755
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TTTCGCCAGGAACGGCGATCCGCGCCGAAACGCATCCCGCCCGTCCACAGAAAACAGCGCCGAACGCATCGCACGGTTCC
ACGTCACCGATCCGGGGCACCCACCCTGCCACCAATCAGCGCGCACCCCCCC-TCTGTATAAACCCAGCAG-CACCGCTC
CTCCTTCCAAACAAATTCCCCACCTTCTTCCAGTTCCAGCGCTCA-----------CCAC---------CCACCAG----
----------CGAA-------------------TCCCCCCAACCCG-----------------------AAGCATCGATG
GCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCGACGACGGAGAAGGCCGAGAAGGCCCC
GGCGGCGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGA------CCGCCTC---CAAGGAGGGCGGCGAGA
AGAGGGGCCGCAAGAAGGGCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTCCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGC
CGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCG
GCGAGCTCGCCAAGCACGCCGTCTCCGAGGGAACCAAGGCCGTCACCAAGTTCACCTCCTCTTAG---------------
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>chr3D_759
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----GCCACGTCA-GCGATCCGCGCCGAAGTGCAG---GCTCGTCCATC-GCAACAGCGGCGAACGGCTGGTATCACTGC
ACGTCACCGATCCGCGGCA-CTACCCCTCCACCAATCAGCGCCCACCTCTTCCATCCTATAAATCACTCCA-TCCC-CTC
CCCGTCTCGCCACAAC---------CCATCCGC-----AATCCCCCACCAGTTCTCCCAC---------CTCCCAC----
----------CGAA-------------------ACCCCGCACCTCCCACCTTCCAAGCGGCGGCGGCAGCAGCGTCCATG
GCGCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCGGCGGCGGAGAAGGCCCC---GGTCCC
GGCCGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGGAAGA------CCGCCGCCGGCAAGGAGGGTGGCGACA
AGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGC
CGCCAAGCTGGCGCGCTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTGCCCG
GCGAGCTCGCCAAGCACGCCGTGTCAGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCT------------
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>chr2B_760
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-----CCACGCCC-GCGATCCGCGCCGAAACGCATCCTGGACGTCCACTTCCGATAGCGCCGAACGCATCTGACCGTTCA
ACATCACCGATCCGGGACACACACCCCTCCACCAATCAGCACTCAGCTCTCCACCTCTATAAGGTCATCAC-GCCCTCTC
CGCTTTCCCCCACATC---------TCCTCCCGCTCCAAATCCCA-----------ACAC---------CTTCCGG----
----------CGGCGAAGCAACCCACCCACCCTTCTCTCCCTCCCG-----------------------AAGCAGCGATG
GCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCCGCGGCGGAGAAGGCCGAGAAGGCCCC
GGCGGCGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCAGCCGGCAAGA------CCGCCTC---CAAGGAGGGCGGCGAGA
AGAAGGGCAAGAAGAAGAGCAAGAAGAGCGTCGAGACCTACAAAATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGGC
CTCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCG
GGGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCTTAGA---TTGCGTCGCCT
GTATCTAGTAG---------------------------------------------------------------------
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>chr2D_760
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-----CCACGCCC-GCGATCCGCGCCGAAACGCATCCCGGACGTCCACGTCCAATAGCGCCGAACGCATCTGACCGTTCA
ACATCACCGATCCGGGACACGCACCCCTCCACCAATCAGCGCTCGCCTCTCCACCTCTATAAGCCCATCAC-CCCCGTTC
TGCTTTCCCCCACATC---------TCCTCCATCTCCAAGTCCCA-----------ACAC---------CTTCCGG----
----------CGGCGAAGCAACCCACCCACTTTTCTCCCCCTCCCG-----------------------AAGCAGCGATG
GCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCAGAGGAGGAGCCCGCGGCGGAGAAGGCCGAGAAGGCCCC
GGCGGCGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGA------CCGCCTC---CAAGGAAGGCGGCGAGA
AGAAGGGCAAGAAGAAGAGCAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGGC
CGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCG
GGGAACTCGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCTTAGA---CTGCGTCGCCT
GTATCTAGTAG---------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----------------------------S-S-------------------------------------------------
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--------------------------------------S---------------------------S---S---------
-S-S------------------SSS-S-S----------------------------SSSSSS-----------------
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-----------------------------------------SS-----------SS---S--------------------
-------S--------------------------------------------------------------S---------
-----------------------------------------------------------------------------S--
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------------------------------S-------------------------------------------------
------------------------------------------------------------------------S-SS----
---------------------------------------------S---------------------------S------
------S----S------------------------S--------S----------------------------------
-S-S----S------S--S-----S-SS-SSS--------------------S---S-SSS-----S--S--S-SSSS-S
SSSS-S-SS-SSS--SS------------S--S-----------SS--------------S-----S-------S-S---
------------S-S--S--S--------S-S--------------------S-----------SS--SSSSSSSSSSSS
SSSSSSS--S--S--S--------S-----------S-----SSSSS-S---------------------S--------S
-S-------------------------SSSSSS------------S--S-S---SS------------------------
SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S
-----------S--SS-SS-SSS-SSS-SS-SSSSSS-S--SSSS-SSS--S-SSS---SSS-SS-SSSS-SS-S-S-SS
S--SSS-SSSSSS---SSSSSSS-SSS-SSSSS-SSS-------------------------------------------
-------S----S-----------S--S-S---------------SS---S--S--S------SS---S----------S
-----S----------------------S-------S---------------S-S-SS------------S---------
----------------------S-----
>forward_110
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----------CATTGCCCTCCACTTGCCTA--------------------------------------------------
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>reverse_2007
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------GGTAATGGTGCCTGCCTCAA------------------------------------------------------
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